Wall clock time and date at job start Mon Mar 30 2020 02:30:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86806 * 120.00060 * 2 1 4 4 H 1.48496 * 109.46674 * 83.69315 * 3 2 1 5 5 H 1.48495 * 109.47119 * 203.69249 * 3 2 1 6 6 H 1.48498 * 109.46932 * 323.69337 * 3 2 1 7 7 C 1.37879 * 120.00148 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99770 * 14.50060 * 7 2 1 9 9 C 1.50700 * 120.00239 * 194.50535 * 7 2 1 10 10 C 1.52998 * 109.54020 * 273.37224 * 9 7 2 11 11 O 1.42908 * 109.46923 * 294.86265 * 10 9 7 12 12 N 1.46300 * 113.99900 * 184.99778 * 11 10 9 13 13 C 1.53169 * 109.54679 * 153.19078 * 9 7 2 14 14 C 1.53286 * 109.06404 * 297.03164 * 13 9 7 15 15 O 1.42910 * 109.45791 * 302.44076 * 14 13 9 16 16 C 1.42904 * 114.09224 * 61.15906 * 15 14 13 17 17 C 1.53089 * 109.41627 * 298.83836 * 16 15 14 18 18 H 0.97004 * 120.00056 * 359.97438 * 1 2 3 19 19 H 1.08997 * 109.47627 * 54.86520 * 10 9 7 20 20 H 1.09006 * 109.47024 * 174.87059 * 10 9 7 21 21 H 1.00903 * 110.99695 * 184.95400 * 12 11 10 22 22 H 1.00900 * 111.00568 * 308.90901 * 12 11 10 23 23 H 1.09006 * 109.51935 * 57.01817 * 13 9 7 24 24 H 1.09004 * 109.52375 * 177.20548 * 13 9 7 25 25 H 1.08995 * 109.45638 * 182.45166 * 14 13 9 26 26 H 1.08994 * 109.46855 * 62.44169 * 14 13 9 27 27 H 1.09004 * 109.47326 * 178.85636 * 16 15 14 28 28 H 1.08998 * 109.49016 * 58.83553 * 16 15 14 29 29 H 1.08992 * 109.52607 * 297.70475 * 17 16 15 30 30 H 1.09005 * 109.57061 * 177.54593 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3634 2.1233 1.3916 5 1 3.6069 1.4054 -0.5626 6 1 1.5195 2.6106 -0.8290 7 6 2.0045 -1.1941 -0.0005 8 1 1.4903 -2.1143 -0.2351 9 6 3.4755 -1.2150 0.3263 10 6 4.2860 -0.9571 -0.9454 11 8 4.0905 -2.0361 -1.8618 12 7 4.9125 -1.9479 -3.0689 13 6 3.8522 -2.5819 0.9058 14 6 3.0930 -2.7950 2.2203 15 8 3.4029 -1.7341 3.1263 16 6 3.0298 -0.4374 2.6557 17 6 3.7860 -0.1289 1.3609 18 1 -0.4850 0.8401 0.0004 19 1 3.9549 -0.0258 -1.4048 20 1 5.3438 -0.8819 -0.6931 21 1 4.6815 -2.6849 -3.7183 22 1 4.8215 -1.0417 -3.5030 23 1 3.5836 -3.3648 0.1965 24 1 4.9251 -2.6138 1.0959 25 1 3.3893 -3.7470 2.6605 26 1 2.0210 -2.8033 2.0234 27 1 3.2805 0.3088 3.4097 28 1 1.9570 -0.4146 2.4645 29 1 4.8574 -0.1113 1.5601 30 1 3.4710 0.8412 0.9763 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261295970.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:26 Heat of formation + Delta-G solvation = -50.020979 kcal Electronic energy + Delta-G solvation = -14196.574754 eV Core-core repulsion = 11800.767139 eV Total energy + Delta-G solvation = -2395.807614 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 201.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.67692 -37.78056 -35.81406 -33.78865 -32.07970 -30.62068 -28.05708 -26.72318 -24.71304 -23.37001 -20.76298 -18.20799 -17.88288 -17.42885 -17.19597 -16.69739 -16.11592 -16.00478 -15.44736 -14.96461 -14.49730 -14.14778 -13.63983 -13.29220 -13.13613 -12.75583 -12.42776 -12.09544 -11.66153 -11.63132 -11.37311 -10.96912 -10.80507 -10.40649 -10.09056 -9.76600 -8.30888 -6.26767 1.24414 1.30427 1.42579 2.00842 2.27051 3.02921 3.06438 3.91953 4.09815 4.17925 4.26303 4.43461 4.52447 4.56317 4.62345 4.66760 4.74628 4.90951 5.08147 5.12827 5.20373 5.38642 5.41105 5.71958 6.04275 6.26382 6.35071 6.42285 6.73680 7.33329 8.86401 Molecular weight = 201.12amu Principal moments of inertia in cm(-1) A = 0.024738 B = 0.021190 C = 0.014649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.596195 B = 1321.058019 C = 1910.889702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.021 3.979 3 Si 0.940 3.060 4 H -0.269 1.269 5 H -0.235 1.235 6 H -0.316 1.316 7 C -0.490 4.490 8 H 0.030 0.970 9 C 0.039 3.961 10 C 0.073 3.927 11 O -0.248 6.248 12 N -0.680 5.680 13 C -0.118 4.118 14 C 0.069 3.931 15 O -0.393 6.393 16 C 0.070 3.930 17 C -0.150 4.150 18 H 0.264 0.736 19 H 0.035 0.965 20 H 0.047 0.953 21 H 0.370 0.630 22 H 0.343 0.657 23 H 0.060 0.940 24 H 0.066 0.934 25 H 0.108 0.892 26 H 0.033 0.967 27 H 0.103 0.897 28 H 0.038 0.962 29 H 0.085 0.915 30 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.671 -0.072 0.037 9.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.176 4.176 3 Si 0.772 3.228 4 H -0.196 1.196 5 H -0.161 1.161 6 H -0.246 1.246 7 C -0.528 4.528 8 H 0.048 0.952 9 C 0.037 3.963 10 C -0.005 4.005 11 O -0.262 6.262 12 N -0.247 5.247 13 C -0.156 4.156 14 C -0.007 4.007 15 O -0.312 6.312 16 C -0.006 4.006 17 C -0.187 4.187 18 H 0.073 0.927 19 H 0.053 0.947 20 H 0.065 0.935 21 H 0.184 0.816 22 H 0.153 0.847 23 H 0.079 0.921 24 H 0.085 0.915 25 H 0.126 0.874 26 H 0.051 0.949 27 H 0.121 0.879 28 H 0.056 0.944 29 H 0.104 0.896 30 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 10.090 -0.323 0.726 10.121 hybrid contribution -1.286 1.195 -1.262 2.162 sum 8.804 0.872 -0.536 8.863 Atomic orbital electron populations 1.70083 1.08232 1.27767 1.51926 1.25766 0.95104 1.02282 0.94459 0.86140 0.79164 0.79442 0.78011 1.19637 1.16091 1.24621 1.20819 0.92395 0.93414 1.46205 0.95155 1.18627 0.93955 0.93783 0.89982 1.22977 0.97800 0.88817 0.90868 1.90735 1.63282 1.45917 1.26257 1.64452 1.46437 1.09816 1.03965 1.21924 0.99303 0.97546 0.96804 1.22564 0.98394 0.89966 0.89764 1.87731 1.83656 1.15485 1.44290 1.22455 0.98174 0.84931 0.95069 1.22513 1.01251 0.97801 0.97110 0.92731 0.94701 0.93522 0.81576 0.84724 0.92148 0.91499 0.87420 0.94881 0.87881 0.94407 0.89625 0.93772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.10 13.96 21.45 0.30 -56.80 16 2 C 0.02 1.18 4.45 84.66 0.38 1.56 16 3 Si 0.94 43.08 22.83 68.60 1.57 44.65 16 4 H -0.27 -11.59 7.03 99.48 0.70 -10.89 16 5 H -0.24 -9.66 4.72 99.48 0.47 -9.19 16 6 H -0.32 -14.96 7.11 99.48 0.71 -14.25 16 7 C -0.49 -26.61 6.56 25.60 0.17 -26.44 16 8 H 0.03 1.89 8.06 -2.91 -0.02 1.86 16 9 C 0.04 1.72 0.34 -52.81 -0.02 1.70 16 10 C 0.07 3.02 4.88 71.98 0.35 3.37 16 11 O -0.25 -10.29 10.92 -50.16 -0.55 -10.83 16 12 N -0.68 -20.81 10.83 37.02 0.40 -20.41 16 13 C -0.12 -4.73 4.68 30.75 0.14 -4.58 16 14 C 0.07 2.72 6.62 72.08 0.48 3.20 16 15 O -0.39 -15.75 10.77 -148.98 -1.60 -17.35 16 16 C 0.07 2.88 6.24 72.01 0.45 3.33 16 17 C -0.15 -6.09 4.09 30.68 0.13 -5.97 16 18 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 19 H 0.03 1.49 5.19 -2.39 -0.01 1.47 16 20 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 21 H 0.37 9.31 9.25 -89.69 -0.83 8.48 16 22 H 0.34 9.20 9.11 -89.69 -0.82 8.38 16 23 H 0.06 2.52 7.68 -2.38 -0.02 2.50 16 24 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 25 H 0.11 3.44 8.14 -2.39 -0.02 3.42 16 26 H 0.03 1.49 7.38 -2.39 -0.02 1.47 16 27 H 0.10 3.56 8.14 -2.39 -0.02 3.54 16 28 H 0.04 1.80 6.58 -2.39 -0.02 1.78 16 29 H 0.09 2.99 8.14 -2.39 -0.02 2.97 16 30 H 0.04 1.86 1.37 -2.38 0.00 1.86 16 Total: -1.00 -64.17 229.65 1.46 -62.72 By element: Atomic # 1 Polarization: 22.60 SS G_CDS: -0.73 Total: 21.87 kcal Atomic # 6 Polarization: -25.91 SS G_CDS: 2.07 Total: -23.83 kcal Atomic # 7 Polarization: -77.91 SS G_CDS: 0.70 Total: -77.21 kcal Atomic # 8 Polarization: -26.04 SS G_CDS: -2.15 Total: -28.19 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 1.57 Total: 44.65 kcal Total: -64.17 1.46 -62.72 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261295970.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.695 kcal (2) G-P(sol) polarization free energy of solvation -64.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds