Wall clock time and date at job start Mon Mar 30 2020 02:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00107 * 2 1 4 4 H 1.48495 * 109.46641 * 269.99853 * 3 2 1 5 5 H 1.48497 * 109.47249 * 29.99515 * 3 2 1 6 6 H 1.48497 * 109.47194 * 149.99883 * 3 2 1 7 7 C 1.37880 * 119.99976 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00324 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99747 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.46724 * 179.97438 * 9 7 2 11 11 C 1.47437 * 111.00223 * 69.15656 * 10 9 7 12 12 C 1.54320 * 107.23257 * 123.25511 * 11 10 9 13 13 H 1.09005 * 110.70961 * 263.90379 * 12 11 10 14 14 O 1.42902 * 110.70671 * 140.84165 * 12 11 10 15 15 C 1.55138 * 103.02210 * 22.28526 * 12 11 10 16 16 H 1.09001 * 110.98913 * 82.43214 * 15 12 11 17 17 C 1.52999 * 110.99653 * 206.25748 * 15 12 11 18 18 O 1.42898 * 109.47151 * 178.72119 * 17 15 12 19 19 C 1.47846 * 110.99547 * 190.00058 * 10 9 7 20 20 H 0.97003 * 119.99792 * 359.97438 * 1 2 3 21 21 H 1.08997 * 109.46821 * 60.00198 * 9 7 2 22 22 H 1.08999 * 109.47180 * 299.99714 * 9 7 2 23 23 H 1.08998 * 109.89349 * 242.66131 * 11 10 9 24 24 H 1.08998 * 109.88725 * 3.69037 * 11 10 9 25 25 H 0.96709 * 113.99803 * 61.45517 * 14 12 11 26 26 H 1.09006 * 109.46252 * 298.71975 * 17 15 12 27 27 H 1.08997 * 109.47142 * 58.71291 * 17 15 12 28 28 H 0.96701 * 113.99538 * 180.02562 * 18 17 15 29 29 H 1.08995 * 110.38030 * 332.46412 * 19 10 9 30 30 H 1.09000 * 110.37255 * 94.81067 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2056 -3.6157 0.0005 11 6 2.9212 -3.6991 1.2869 12 6 2.6796 -5.1140 1.8536 13 1 1.8525 -5.1088 2.5635 14 8 3.8662 -5.6221 2.4668 15 6 2.3138 -5.9384 0.5913 16 1 3.2105 -6.2578 0.0602 17 6 1.4381 -7.1390 0.9554 18 8 1.0965 -7.8570 -0.2319 19 6 1.5166 -4.9017 -0.2392 20 1 -0.4850 0.8401 0.0004 21 1 0.6247 -2.5571 -0.8897 22 1 0.6240 -2.5567 0.8903 23 1 3.9879 -3.5401 1.1289 24 1 2.5329 -2.9496 1.9764 25 1 4.1779 -5.0962 3.2161 26 1 1.9850 -7.7954 1.6324 27 1 0.5282 -6.7902 1.4437 28 1 0.5406 -8.6327 -0.0762 29 1 0.4848 -4.8500 0.1081 30 1 1.5492 -5.1580 -1.2981 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306377242.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:45 Heat of formation + Delta-G solvation = -98.563197 kcal Electronic energy + Delta-G solvation = -13273.257519 eV Core-core repulsion = 10875.344957 eV Total energy + Delta-G solvation = -2397.912563 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 201.115 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.04189 -36.49895 -35.55479 -32.90792 -31.06768 -28.02929 -26.85386 -24.30658 -22.40654 -20.18973 -20.01593 -17.44274 -16.90765 -16.20004 -15.44319 -15.12077 -14.39620 -14.16147 -13.47595 -13.04899 -12.74840 -12.46718 -12.09215 -11.70598 -11.35175 -11.06385 -10.98313 -10.61644 -10.55067 -10.12380 -10.03765 -9.80736 -9.66752 -9.20004 -8.45014 -7.25580 -6.03965 -4.05631 3.31759 3.37523 3.41286 4.10183 4.39457 4.46628 4.87054 5.05485 5.13609 5.31015 5.34649 5.46374 5.58743 5.73758 5.90369 6.03854 6.29549 6.49646 6.56303 6.59598 7.16812 7.27767 7.65468 7.78535 7.80454 8.03302 8.17087 8.50800 9.02727 9.58953 11.06846 Molecular weight = 201.12amu Principal moments of inertia in cm(-1) A = 0.052128 B = 0.008246 C = 0.007442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.005793 B = 3394.726217 C = 3761.435730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.054 3.946 3 Si 0.899 3.101 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.508 4.508 8 H 0.063 0.937 9 C 0.187 3.813 10 N -0.525 5.525 11 C 0.026 3.974 12 C 0.085 3.915 13 H 0.059 0.941 14 O -0.564 6.564 15 C -0.089 4.089 16 H 0.095 0.905 17 C 0.088 3.912 18 O -0.569 6.569 19 C 0.055 3.945 20 H 0.261 0.739 21 H 0.031 0.969 22 H -0.008 1.008 23 H 0.073 0.927 24 H 0.065 0.935 25 H 0.377 0.623 26 H 0.047 0.953 27 H 0.044 0.956 28 H 0.375 0.625 29 H 0.040 0.960 30 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.401 -11.387 4.837 12.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.147 4.147 3 Si 0.727 3.273 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.547 4.547 8 H 0.081 0.919 9 C 0.062 3.938 10 N -0.251 5.251 11 C -0.102 4.102 12 C 0.025 3.975 13 H 0.077 0.923 14 O -0.369 6.369 15 C -0.108 4.108 16 H 0.113 0.887 17 C 0.010 3.990 18 O -0.374 6.374 19 C -0.073 4.073 20 H 0.071 0.929 21 H 0.049 0.951 22 H 0.010 0.990 23 H 0.091 0.909 24 H 0.083 0.917 25 H 0.224 0.776 26 H 0.065 0.935 27 H 0.062 0.938 28 H 0.221 0.779 29 H 0.058 0.942 30 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.891 -11.126 3.698 12.075 hybrid contribution -0.570 0.877 1.377 1.729 sum 2.321 -10.248 5.075 11.669 Atomic orbital electron populations 1.69963 1.06073 1.26801 1.51056 1.25006 0.94884 0.99367 0.95422 0.86476 0.79653 0.82964 0.78199 1.20563 1.21321 1.19864 1.21172 0.93577 0.89909 1.49996 0.91880 1.19940 0.90059 0.87650 0.96165 1.63652 1.29009 1.02882 1.29545 1.23368 1.00635 0.94274 0.91973 1.23152 0.86692 0.94210 0.93420 0.92264 1.86458 1.44240 1.55532 1.50709 1.22255 0.99275 0.93701 0.95572 0.88714 1.22132 0.97245 0.92987 0.86609 1.86519 1.73412 1.44614 1.32871 1.22949 0.95493 0.88754 1.00101 0.92908 0.95087 0.99001 0.90883 0.91708 0.77553 0.93470 0.93780 0.77870 0.94212 0.90350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.88 13.29 55.43 0.74 -26.14 16 2 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 3 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.51 -14.51 8.63 -34.44 -0.30 -14.81 16 8 H 0.06 1.79 7.76 -52.49 -0.41 1.39 16 9 C 0.19 4.98 4.30 -4.97 -0.02 4.96 16 10 N -0.53 -11.88 5.15 -232.69 -1.20 -13.08 16 11 C 0.03 0.52 6.14 -2.84 -0.02 0.50 16 12 C 0.09 1.37 3.78 -24.91 -0.09 1.27 16 13 H 0.06 0.90 8.04 -51.93 -0.42 0.48 16 14 O -0.56 -8.17 13.40 -35.23 -0.47 -8.64 16 15 C -0.09 -1.47 3.05 -88.48 -0.27 -1.74 16 16 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 17 C 0.09 1.19 6.49 37.16 0.24 1.44 16 18 O -0.57 -7.55 13.51 -35.23 -0.48 -8.02 16 19 C 0.06 1.07 6.02 -2.29 -0.01 1.05 16 20 H 0.26 7.36 8.31 -40.82 -0.34 7.03 16 21 H 0.03 0.89 8.08 -51.93 -0.42 0.47 16 22 H -0.01 -0.22 7.99 -51.93 -0.41 -0.63 16 23 H 0.07 1.42 8.06 -51.93 -0.42 1.00 16 24 H 0.06 1.35 7.30 -51.93 -0.38 0.97 16 25 H 0.38 3.84 9.11 45.56 0.42 4.25 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.04 0.56 8.10 -51.93 -0.42 0.14 16 28 H 0.38 2.97 9.12 45.56 0.42 3.39 16 29 H 0.04 0.77 7.67 -51.93 -0.40 0.38 16 30 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 LS Contribution 254.03 15.07 3.83 3.83 Total: -1.00 -32.63 254.03 -6.02 -38.65 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -2.85 Total: 2.50 kcal Atomic # 6 Polarization: -5.29 SS G_CDS: -0.57 Total: -5.86 kcal Atomic # 7 Polarization: -38.76 SS G_CDS: -0.46 Total: -39.22 kcal Atomic # 8 Polarization: -15.71 SS G_CDS: -0.95 Total: -16.66 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -32.63 -6.02 -38.65 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306377242.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.909 kcal (2) G-P(sol) polarization free energy of solvation -32.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds