Wall clock time and date at job start Mon Mar 30 2020 02:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00107 * 2 1 4 4 H 1.48495 * 109.46641 * 269.99853 * 3 2 1 5 5 H 1.48497 * 109.47249 * 29.99515 * 3 2 1 6 6 H 1.48497 * 109.47194 * 149.99883 * 3 2 1 7 7 C 1.37880 * 119.99976 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00324 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99747 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.46724 * 179.97438 * 9 7 2 11 11 C 1.47437 * 111.00223 * 69.15656 * 10 9 7 12 12 C 1.54320 * 107.23257 * 123.25511 * 11 10 9 13 13 H 1.09005 * 110.70961 * 263.90379 * 12 11 10 14 14 O 1.42902 * 110.70671 * 140.84165 * 12 11 10 15 15 C 1.55138 * 103.02210 * 22.28526 * 12 11 10 16 16 H 1.09001 * 110.98913 * 82.43214 * 15 12 11 17 17 C 1.52999 * 110.99653 * 206.25748 * 15 12 11 18 18 O 1.42898 * 109.47151 * 178.72119 * 17 15 12 19 19 C 1.47846 * 110.99547 * 190.00058 * 10 9 7 20 20 H 0.97003 * 119.99792 * 359.97438 * 1 2 3 21 21 H 1.08997 * 109.46821 * 60.00198 * 9 7 2 22 22 H 1.08999 * 109.47180 * 299.99714 * 9 7 2 23 23 H 1.08998 * 109.89349 * 242.66131 * 11 10 9 24 24 H 1.08998 * 109.88725 * 3.69037 * 11 10 9 25 25 H 0.96709 * 113.99803 * 61.45517 * 14 12 11 26 26 H 1.09006 * 109.46252 * 298.71975 * 17 15 12 27 27 H 1.08997 * 109.47142 * 58.71291 * 17 15 12 28 28 H 0.96701 * 113.99538 * 180.02562 * 18 17 15 29 29 H 1.08995 * 110.38030 * 332.46412 * 19 10 9 30 30 H 1.09000 * 110.37255 * 94.81067 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2056 -3.6157 0.0005 11 6 2.9212 -3.6991 1.2869 12 6 2.6796 -5.1140 1.8536 13 1 1.8525 -5.1088 2.5635 14 8 3.8662 -5.6221 2.4668 15 6 2.3138 -5.9384 0.5913 16 1 3.2105 -6.2578 0.0602 17 6 1.4381 -7.1390 0.9554 18 8 1.0965 -7.8570 -0.2319 19 6 1.5166 -4.9017 -0.2392 20 1 -0.4850 0.8401 0.0004 21 1 0.6247 -2.5571 -0.8897 22 1 0.6240 -2.5567 0.8903 23 1 3.9879 -3.5401 1.1289 24 1 2.5329 -2.9496 1.9764 25 1 4.1779 -5.0962 3.2161 26 1 1.9850 -7.7954 1.6324 27 1 0.5282 -6.7902 1.4437 28 1 0.5406 -8.6327 -0.0762 29 1 0.4848 -4.8500 0.1081 30 1 1.5492 -5.1580 -1.2981 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306377242.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:44 Heat of formation + Delta-G solvation = -127.907539 kcal Electronic energy + Delta-G solvation = -13274.529985 eV Core-core repulsion = 10875.344957 eV Total energy + Delta-G solvation = -2399.185029 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 201.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.48873 -37.57138 -36.98302 -34.93143 -32.66820 -29.61784 -28.68674 -25.85361 -24.17236 -21.87517 -21.39141 -18.57633 -18.43948 -17.99326 -17.00559 -16.61937 -16.16197 -15.48070 -14.93777 -14.63414 -14.20781 -14.18747 -13.79769 -13.34802 -13.03082 -12.79037 -12.60285 -12.36132 -12.18190 -11.87193 -11.50214 -11.31808 -11.09701 -10.87386 -10.64784 -9.06635 -8.23501 -6.34638 1.39930 1.41981 1.53005 2.38569 3.01385 3.08332 3.11870 3.47498 3.62450 3.95329 4.04539 4.25336 4.35208 4.47177 4.54954 4.66587 4.81625 4.93568 4.97018 5.06965 5.19038 5.21913 5.62477 5.99383 6.25155 6.50064 6.80596 6.81391 6.93453 7.35616 8.87500 Molecular weight = 201.12amu Principal moments of inertia in cm(-1) A = 0.052128 B = 0.008246 C = 0.007442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.005793 B = 3394.726217 C = 3761.435730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.002 3.998 3 Si 0.972 3.028 4 H -0.274 1.274 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.528 4.528 8 H 0.060 0.940 9 C 0.205 3.795 10 N -0.542 5.542 11 C 0.025 3.975 12 C 0.103 3.897 13 H 0.076 0.924 14 O -0.565 6.565 15 C -0.084 4.084 16 H 0.084 0.916 17 C 0.096 3.904 18 O -0.589 6.589 19 C 0.054 3.946 20 H 0.266 0.734 21 H 0.000 1.000 22 H -0.029 1.029 23 H 0.072 0.928 24 H 0.048 0.952 25 H 0.398 0.602 26 H 0.067 0.933 27 H 0.054 0.946 28 H 0.399 0.601 29 H 0.036 0.964 30 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.258 -11.890 5.730 13.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.196 4.196 3 Si 0.796 3.204 4 H -0.199 1.199 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.566 4.566 8 H 0.078 0.922 9 C 0.078 3.922 10 N -0.268 5.268 11 C -0.104 4.104 12 C 0.043 3.957 13 H 0.094 0.906 14 O -0.373 6.373 15 C -0.104 4.104 16 H 0.102 0.898 17 C 0.018 3.982 18 O -0.397 6.397 19 C -0.074 4.074 20 H 0.075 0.925 21 H 0.019 0.981 22 H -0.012 1.012 23 H 0.091 0.909 24 H 0.067 0.933 25 H 0.248 0.752 26 H 0.086 0.914 27 H 0.072 0.928 28 H 0.249 0.751 29 H 0.055 0.945 30 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.756 -11.663 4.610 13.091 hybrid contribution -0.831 0.980 1.080 1.679 sum 2.926 -10.682 5.690 12.452 Atomic orbital electron populations 1.70083 1.07720 1.28048 1.51505 1.25939 0.95798 1.03263 0.94596 0.85343 0.78532 0.78024 0.78479 1.19948 1.20434 1.18814 1.21448 0.93567 0.91131 1.50480 0.92193 1.19568 0.90003 0.89014 0.93596 1.63506 1.28358 1.03226 1.31690 1.23378 0.99874 0.96621 0.90495 1.22860 0.87853 0.91432 0.93586 0.90611 1.86425 1.43489 1.55706 1.51664 1.22198 0.98986 0.94165 0.95012 0.89790 1.22014 0.97293 0.92099 0.86842 1.86458 1.74225 1.45960 1.33089 1.22950 0.95667 0.88292 1.00445 0.92540 0.98145 1.01172 0.90927 0.93323 0.75191 0.91444 0.92771 0.75116 0.94530 0.91056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.56 13.29 21.45 0.28 -56.27 16 2 C 0.00 0.13 5.46 84.66 0.46 0.59 16 3 Si 0.97 44.61 29.54 68.60 2.03 46.63 16 4 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 5 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 6 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 7 C -0.53 -30.70 8.63 25.60 0.22 -30.48 16 8 H 0.06 3.44 7.76 -2.91 -0.02 3.42 16 9 C 0.20 11.28 4.30 85.56 0.37 11.64 16 10 N -0.54 -24.97 5.15 -890.09 -4.59 -29.56 16 11 C 0.02 0.97 6.14 86.65 0.53 1.50 16 12 C 0.10 3.12 3.78 31.78 0.12 3.24 16 13 H 0.08 2.10 8.04 -2.38 -0.02 2.08 16 14 O -0.57 -14.74 13.40 -148.98 -2.00 -16.74 16 15 C -0.08 -2.67 3.05 -9.41 -0.03 -2.70 16 16 H 0.08 2.85 8.14 -2.39 -0.02 2.83 16 17 C 0.10 2.33 6.49 71.98 0.47 2.80 16 18 O -0.59 -14.27 13.51 -148.98 -2.01 -16.29 16 19 C 0.05 2.11 6.02 86.78 0.52 2.63 16 20 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 21 H 0.00 0.03 8.08 -2.39 -0.02 0.01 16 22 H -0.03 -1.71 7.99 -2.39 -0.02 -1.72 16 23 H 0.07 2.80 8.06 -2.39 -0.02 2.78 16 24 H 0.05 2.04 7.30 -2.39 -0.02 2.02 16 25 H 0.40 6.89 9.11 -74.05 -0.67 6.21 16 26 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 27 H 0.05 1.22 8.10 -2.39 -0.02 1.20 16 28 H 0.40 5.25 9.12 -74.06 -0.68 4.58 16 29 H 0.04 1.44 7.67 -2.39 -0.02 1.42 16 30 H 0.07 2.83 8.14 -2.39 -0.02 2.81 16 Total: -1.00 -69.96 254.03 -3.83 -73.80 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -0.21 Total: 9.20 kcal Atomic # 6 Polarization: -13.44 SS G_CDS: 2.66 Total: -10.78 kcal Atomic # 7 Polarization: -81.53 SS G_CDS: -4.30 Total: -85.83 kcal Atomic # 8 Polarization: -29.01 SS G_CDS: -4.01 Total: -33.02 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.63 kcal Total: -69.96 -3.83 -73.80 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306377242.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.111 kcal (2) G-P(sol) polarization free energy of solvation -69.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds