Wall clock time and date at job start Mon Mar 30 2020 02:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00034 * 2 1 4 4 H 1.48503 * 109.47358 * 90.00212 * 3 2 1 5 5 H 1.48499 * 109.47555 * 210.00333 * 3 2 1 6 6 H 1.48501 * 109.47274 * 330.00493 * 3 2 1 7 7 C 1.37878 * 119.99967 * 180.28049 * 2 1 3 8 8 H 1.08002 * 120.00104 * 359.71997 * 7 2 1 9 9 C 1.50701 * 120.00014 * 179.71901 * 7 2 1 10 10 N 1.46900 * 109.47260 * 175.07431 * 9 7 2 11 11 C 1.47896 * 111.00145 * 175.77433 * 10 9 7 12 12 C 1.53994 * 107.05969 * 214.15750 * 11 10 9 13 13 H 1.08997 * 110.30594 * 242.30642 * 12 11 10 14 14 O 1.42899 * 110.30418 * 120.24519 * 12 11 10 15 15 C 1.54589 * 105.13973 * 1.23017 * 12 11 10 16 16 H 1.09004 * 110.71939 * 263.42108 * 15 12 11 17 17 C 1.53002 * 110.72375 * 140.31354 * 15 12 11 18 18 O 1.42908 * 109.46701 * 174.99699 * 17 15 12 19 19 C 1.48536 * 110.99555 * 58.37968 * 10 9 7 20 20 H 0.97000 * 119.99782 * 359.97438 * 1 2 3 21 21 H 1.08994 * 109.47109 * 295.07934 * 9 7 2 22 22 H 1.09003 * 109.47067 * 55.07552 * 9 7 2 23 23 H 1.09003 * 109.91890 * 333.51848 * 11 10 9 24 24 H 1.09005 * 109.91710 * 94.60810 * 11 10 9 25 25 H 0.96697 * 114.00474 * 61.45195 * 14 12 11 26 26 H 1.08993 * 109.47097 * 294.99540 * 17 15 12 27 27 H 1.08998 * 109.47101 * 54.99980 * 17 15 12 28 28 H 0.96701 * 113.99419 * 179.97438 * 18 17 15 29 29 H 1.08994 * 110.66914 * 278.15755 * 19 10 9 30 30 H 1.08999 * 110.66601 * 41.29051 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5467 1.4402 -0.7001 6 1 1.4466 2.6527 -0.6999 7 6 2.0045 -1.1941 -0.0058 8 1 1.4645 -2.1294 -0.0059 9 6 3.5115 -1.1940 -0.0122 10 7 4.0017 -2.5742 0.1012 11 6 5.4762 -2.6232 -0.0030 12 6 5.8349 -3.9377 -0.7206 13 1 6.4268 -4.5769 -0.0656 14 8 6.5520 -3.6648 -1.9262 15 6 4.4782 -4.6063 -1.0404 16 1 4.2220 -5.3424 -0.2783 17 6 4.5066 -5.2527 -2.4269 18 8 3.2849 -5.9605 -2.6475 19 6 3.4889 -3.4142 -1.0113 20 1 -0.4850 0.8401 0.0004 21 1 3.8709 -0.7562 -0.9434 22 1 3.8784 -0.6077 0.8303 23 1 5.8359 -1.7733 -0.5830 24 1 5.9196 -2.6074 0.9926 25 1 7.3923 -3.2065 -1.7889 26 1 4.6205 -4.4790 -3.1861 27 1 5.3447 -5.9470 -2.4870 28 1 3.2329 -6.3961 -3.5093 29 1 2.4772 -3.7590 -0.7982 30 1 3.5195 -2.8660 -1.9529 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306377249.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:46 Heat of formation + Delta-G solvation = -92.393612 kcal Electronic energy + Delta-G solvation = -13427.458212 eV Core-core repulsion = 11029.813182 eV Total energy + Delta-G solvation = -2397.645029 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 201.115 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.17498 -36.34609 -35.58434 -32.74682 -31.20545 -28.68596 -26.68011 -24.63774 -22.02233 -20.16416 -19.81609 -17.66455 -16.94163 -16.50006 -15.36445 -14.64918 -14.57170 -13.96782 -13.75624 -13.20046 -12.99432 -12.66664 -12.23687 -11.68379 -11.49671 -11.01025 -10.75191 -10.56260 -10.45916 -10.35406 -10.00014 -9.74767 -9.54867 -9.20139 -8.56703 -7.51290 -6.04101 -4.02044 3.28785 3.35928 3.38100 4.22474 4.33068 4.42673 4.92083 4.97807 5.03602 5.29259 5.38438 5.54377 5.61688 5.81155 5.97572 6.04409 6.14208 6.25519 6.59159 6.68109 6.86901 7.00192 7.46424 7.66881 7.82738 7.88381 7.92692 8.63512 9.03641 9.56861 11.08889 Molecular weight = 201.12amu Principal moments of inertia in cm(-1) A = 0.041763 B = 0.009834 C = 0.008533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.289148 B = 2846.516626 C = 3280.758225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.069 3.931 3 Si 0.877 3.123 4 H -0.275 1.275 5 H -0.269 1.269 6 H -0.286 1.286 7 C -0.513 4.513 8 H 0.081 0.919 9 C 0.155 3.845 10 N -0.506 5.506 11 C 0.000 4.000 12 C 0.100 3.900 13 H 0.063 0.937 14 O -0.566 6.566 15 C -0.090 4.090 16 H 0.095 0.905 17 C 0.098 3.902 18 O -0.573 6.573 19 C 0.067 3.933 20 H 0.264 0.736 21 H -0.011 1.011 22 H 0.026 0.974 23 H 0.046 0.954 24 H 0.075 0.925 25 H 0.375 0.625 26 H 0.052 0.948 27 H 0.041 0.959 28 H 0.374 0.626 29 H 0.088 0.912 30 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.823 -7.620 -3.926 15.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.133 4.133 3 Si 0.704 3.296 4 H -0.201 1.201 5 H -0.194 1.194 6 H -0.212 1.212 7 C -0.551 4.551 8 H 0.099 0.901 9 C 0.028 3.972 10 N -0.231 5.231 11 C -0.130 4.130 12 C 0.041 3.959 13 H 0.081 0.919 14 O -0.371 6.371 15 C -0.109 4.109 16 H 0.113 0.887 17 C 0.020 3.980 18 O -0.378 6.378 19 C -0.061 4.061 20 H 0.074 0.926 21 H 0.006 0.994 22 H 0.044 0.956 23 H 0.065 0.935 24 H 0.093 0.907 25 H 0.222 0.778 26 H 0.070 0.930 27 H 0.060 0.940 28 H 0.220 0.780 29 H 0.106 0.894 30 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 11.836 -7.736 -3.068 14.469 hybrid contribution 1.311 1.501 -0.972 2.218 sum 13.147 -6.235 -4.040 15.101 Atomic orbital electron populations 1.69898 1.06111 1.26838 1.50907 1.24910 0.94762 0.98864 0.94752 0.86838 0.80235 0.83979 0.78551 1.20111 1.19414 1.21162 1.21054 0.88589 0.94944 1.50539 0.90053 1.20333 0.97288 0.84815 0.94734 1.64782 1.02439 1.13277 1.42577 1.23654 0.92978 0.96363 0.99962 1.22681 0.92498 0.95353 0.85370 0.91858 1.86504 1.37492 1.80979 1.32124 1.22229 0.93726 0.97984 0.96925 0.88688 1.21867 0.85156 0.94323 0.96695 1.86525 1.39557 1.71457 1.40257 1.23006 0.98654 0.91323 0.93094 0.92644 0.99382 0.95604 0.93534 0.90689 0.77783 0.92995 0.94036 0.77993 0.89363 0.93939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.04 13.96 55.43 0.77 -27.27 16 2 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 3 Si 0.88 21.93 27.38 -169.99 -4.65 17.28 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.27 -6.52 6.68 56.52 0.38 -6.14 16 6 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 7 C -0.51 -15.06 9.24 -34.44 -0.32 -15.37 16 8 H 0.08 2.59 6.96 -52.49 -0.37 2.22 16 9 C 0.16 3.92 3.66 -4.98 -0.02 3.90 16 10 N -0.51 -11.13 5.34 -231.89 -1.24 -12.37 16 11 C 0.00 -0.01 6.51 -2.76 -0.02 -0.03 16 12 C 0.10 1.45 4.23 -25.38 -0.11 1.34 16 13 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 14 O -0.57 -7.46 11.82 -35.23 -0.42 -7.87 16 15 C -0.09 -1.49 3.30 -88.76 -0.29 -1.78 16 16 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 17 C 0.10 1.44 5.63 37.16 0.21 1.65 16 18 O -0.57 -8.50 13.60 -35.23 -0.48 -8.98 16 19 C 0.07 1.41 5.10 -1.89 -0.01 1.40 16 20 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 21 H -0.01 -0.29 7.37 -51.93 -0.38 -0.68 16 22 H 0.03 0.65 7.30 -51.93 -0.38 0.27 16 23 H 0.05 0.80 7.49 -51.93 -0.39 0.41 16 24 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 25 H 0.38 3.28 9.11 45.56 0.41 3.69 16 26 H 0.05 0.80 7.61 -51.93 -0.40 0.41 16 27 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.37 3.58 9.12 45.56 0.42 4.00 16 29 H 0.09 2.04 7.28 -51.93 -0.38 1.66 16 30 H 0.04 0.94 7.81 -51.93 -0.41 0.54 16 LS Contribution 247.05 15.07 3.72 3.72 Total: -1.00 -33.71 247.05 -5.66 -39.37 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -2.71 Total: 3.08 kcal Atomic # 6 Polarization: -6.30 SS G_CDS: -0.65 Total: -6.95 kcal Atomic # 7 Polarization: -39.18 SS G_CDS: -0.47 Total: -39.64 kcal Atomic # 8 Polarization: -15.96 SS G_CDS: -0.90 Total: -16.85 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.65 Total: 17.28 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -33.71 -5.66 -39.37 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306377249.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.026 kcal (2) G-P(sol) polarization free energy of solvation -33.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds