Wall clock time and date at job start Mon Mar 30 2020 02:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00034 * 2 1 4 4 H 1.48503 * 109.47358 * 90.00212 * 3 2 1 5 5 H 1.48499 * 109.47555 * 210.00333 * 3 2 1 6 6 H 1.48501 * 109.47274 * 330.00493 * 3 2 1 7 7 C 1.37878 * 119.99967 * 180.28049 * 2 1 3 8 8 H 1.08002 * 120.00104 * 359.71997 * 7 2 1 9 9 C 1.50701 * 120.00014 * 179.71901 * 7 2 1 10 10 N 1.46900 * 109.47260 * 175.07431 * 9 7 2 11 11 C 1.47896 * 111.00145 * 175.77433 * 10 9 7 12 12 C 1.53994 * 107.05969 * 214.15750 * 11 10 9 13 13 H 1.08997 * 110.30594 * 242.30642 * 12 11 10 14 14 O 1.42899 * 110.30418 * 120.24519 * 12 11 10 15 15 C 1.54589 * 105.13973 * 1.23017 * 12 11 10 16 16 H 1.09004 * 110.71939 * 263.42108 * 15 12 11 17 17 C 1.53002 * 110.72375 * 140.31354 * 15 12 11 18 18 O 1.42908 * 109.46701 * 174.99699 * 17 15 12 19 19 C 1.48536 * 110.99555 * 58.37968 * 10 9 7 20 20 H 0.97000 * 119.99782 * 359.97438 * 1 2 3 21 21 H 1.08994 * 109.47109 * 295.07934 * 9 7 2 22 22 H 1.09003 * 109.47067 * 55.07552 * 9 7 2 23 23 H 1.09003 * 109.91890 * 333.51848 * 11 10 9 24 24 H 1.09005 * 109.91710 * 94.60810 * 11 10 9 25 25 H 0.96697 * 114.00474 * 61.45195 * 14 12 11 26 26 H 1.08993 * 109.47097 * 294.99540 * 17 15 12 27 27 H 1.08998 * 109.47101 * 54.99980 * 17 15 12 28 28 H 0.96701 * 113.99419 * 179.97438 * 18 17 15 29 29 H 1.08994 * 110.66914 * 278.15755 * 19 10 9 30 30 H 1.08999 * 110.66601 * 41.29051 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5467 1.4402 -0.7001 6 1 1.4466 2.6527 -0.6999 7 6 2.0045 -1.1941 -0.0058 8 1 1.4645 -2.1294 -0.0059 9 6 3.5115 -1.1940 -0.0122 10 7 4.0017 -2.5742 0.1012 11 6 5.4762 -2.6232 -0.0030 12 6 5.8349 -3.9377 -0.7206 13 1 6.4268 -4.5769 -0.0656 14 8 6.5520 -3.6648 -1.9262 15 6 4.4782 -4.6063 -1.0404 16 1 4.2220 -5.3424 -0.2783 17 6 4.5066 -5.2527 -2.4269 18 8 3.2849 -5.9605 -2.6475 19 6 3.4889 -3.4142 -1.0113 20 1 -0.4850 0.8401 0.0004 21 1 3.8709 -0.7562 -0.9434 22 1 3.8784 -0.6077 0.8303 23 1 5.8359 -1.7733 -0.5830 24 1 5.9196 -2.6074 0.9926 25 1 7.3923 -3.2065 -1.7889 26 1 4.6205 -4.4790 -3.1861 27 1 5.3447 -5.9470 -2.4870 28 1 3.2329 -6.3961 -3.5093 29 1 2.4772 -3.7590 -0.7982 30 1 3.5195 -2.8660 -1.9529 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306377249.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:46 Heat of formation + Delta-G solvation = -123.952599 kcal Electronic energy + Delta-G solvation = -13428.826712 eV Core-core repulsion = 11029.813182 eV Total energy + Delta-G solvation = -2399.013530 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 201.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.54000 -37.53303 -36.92085 -34.82155 -32.81368 -30.28673 -28.40090 -26.16698 -23.69561 -21.88992 -21.14439 -19.18750 -18.41910 -17.95523 -16.93183 -16.37058 -15.91994 -15.59084 -15.15736 -14.74521 -14.46505 -14.38054 -13.97943 -13.26126 -13.04672 -12.74383 -12.59336 -12.11618 -11.95856 -11.75200 -11.70659 -11.41901 -11.02269 -10.82773 -10.74591 -9.24177 -8.32538 -6.37815 1.31333 1.33685 1.44609 2.31048 2.97752 3.06580 3.23028 3.52433 3.64466 3.80744 4.21613 4.25712 4.43106 4.55290 4.65297 4.66495 4.77632 4.79113 4.89434 5.01265 5.15793 5.24551 5.43657 5.91151 6.09507 6.52980 6.67939 6.88437 6.95987 7.25905 8.84173 Molecular weight = 201.12amu Principal moments of inertia in cm(-1) A = 0.041763 B = 0.009834 C = 0.008533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.289148 B = 2846.516626 C = 3280.758225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.007 3.993 3 Si 0.954 3.046 4 H -0.261 1.261 5 H -0.253 1.253 6 H -0.279 1.279 7 C -0.527 4.527 8 H 0.034 0.966 9 C 0.166 3.834 10 N -0.526 5.526 11 C -0.005 4.005 12 C 0.117 3.883 13 H 0.102 0.898 14 O -0.573 6.573 15 C -0.089 4.089 16 H 0.096 0.904 17 C 0.104 3.896 18 O -0.596 6.596 19 C 0.070 3.930 20 H 0.268 0.732 21 H -0.015 1.015 22 H 0.034 0.966 23 H 0.048 0.952 24 H 0.097 0.903 25 H 0.397 0.603 26 H 0.042 0.958 27 H 0.071 0.929 28 H 0.396 0.604 29 H 0.047 0.953 30 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.830 -7.382 -3.958 17.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.191 4.191 3 Si 0.776 3.224 4 H -0.185 1.185 5 H -0.177 1.177 6 H -0.204 1.204 7 C -0.565 4.565 8 H 0.053 0.947 9 C 0.038 3.962 10 N -0.251 5.251 11 C -0.133 4.133 12 C 0.057 3.943 13 H 0.119 0.881 14 O -0.382 6.382 15 C -0.108 4.108 16 H 0.115 0.885 17 C 0.026 3.974 18 O -0.405 6.405 19 C -0.058 4.058 20 H 0.077 0.923 21 H 0.003 0.997 22 H 0.052 0.948 23 H 0.067 0.933 24 H 0.116 0.884 25 H 0.248 0.752 26 H 0.060 0.940 27 H 0.089 0.911 28 H 0.245 0.755 29 H 0.066 0.934 30 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 14.877 -7.522 -3.115 16.959 hybrid contribution 0.314 1.332 -0.986 1.687 sum 15.191 -6.189 -4.100 16.908 Atomic orbital electron populations 1.70059 1.08204 1.28295 1.52118 1.25933 0.95724 1.03412 0.94018 0.85622 0.79146 0.78133 0.79464 1.18549 1.17693 1.20441 1.21289 0.91112 0.93458 1.50664 0.94739 1.20083 0.94355 0.87138 0.94578 1.64645 1.06075 1.11265 1.43082 1.23850 0.89321 0.98229 1.01885 1.22505 0.91870 0.93955 0.85960 0.88055 1.86466 1.38851 1.81359 1.31478 1.22236 0.93874 0.96221 0.98473 0.88537 1.21799 0.85948 0.94600 0.95040 1.86481 1.40038 1.71738 1.42222 1.22832 0.98218 0.93108 0.91682 0.92264 0.99741 0.94809 0.93336 0.88439 0.75195 0.93975 0.91122 0.75466 0.93445 0.96084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.94 13.96 21.45 0.30 -60.64 16 2 C 0.01 0.40 5.47 84.65 0.46 0.86 16 3 Si 0.95 45.15 27.38 68.60 1.88 47.03 16 4 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 5 H -0.25 -11.24 6.68 99.48 0.66 -10.57 16 6 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 7 C -0.53 -32.12 9.24 25.60 0.24 -31.88 16 8 H 0.03 2.35 6.96 -2.91 -0.02 2.33 16 9 C 0.17 8.39 3.66 85.56 0.31 8.71 16 10 N -0.53 -23.09 5.34 -887.57 -4.74 -27.83 16 11 C 0.00 -0.14 6.51 86.45 0.56 0.42 16 12 C 0.12 2.96 4.23 31.47 0.13 3.09 16 13 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 14 O -0.57 -12.88 11.82 -148.98 -1.76 -14.64 16 15 C -0.09 -2.84 3.30 -9.59 -0.03 -2.87 16 16 H 0.10 3.04 8.14 -2.38 -0.02 3.02 16 17 C 0.10 2.88 5.63 71.98 0.41 3.29 16 18 O -0.60 -17.25 13.60 -148.98 -2.03 -19.27 16 19 C 0.07 3.02 5.10 86.65 0.44 3.46 16 20 H 0.27 15.98 8.31 -92.71 -0.77 15.21 16 21 H -0.02 -0.76 7.37 -2.39 -0.02 -0.78 16 22 H 0.03 1.65 7.30 -2.39 -0.02 1.63 16 23 H 0.05 1.52 7.49 -2.39 -0.02 1.50 16 24 H 0.10 2.64 8.14 -2.38 -0.02 2.62 16 25 H 0.40 5.14 9.11 -74.06 -0.67 4.46 16 26 H 0.04 1.25 7.61 -2.39 -0.02 1.23 16 27 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.40 7.10 9.12 -74.06 -0.68 6.43 16 29 H 0.05 2.37 7.28 -2.39 -0.02 2.35 16 30 H 0.02 0.97 7.81 -2.39 -0.02 0.95 16 Total: -1.00 -75.45 247.05 -4.08 -79.53 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -0.25 Total: 10.75 kcal Atomic # 6 Polarization: -17.45 SS G_CDS: 2.52 Total: -14.93 kcal Atomic # 7 Polarization: -84.02 SS G_CDS: -4.44 Total: -88.47 kcal Atomic # 8 Polarization: -30.13 SS G_CDS: -3.79 Total: -33.91 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 1.88 Total: 47.03 kcal Total: -75.45 -4.08 -79.53 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306377249.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.425 kcal (2) G-P(sol) polarization free energy of solvation -75.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds