Wall clock time and date at job start Mon Mar 30 2020 02:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42902 * 114.00234 * 2 1 4 4 H 1.08999 * 110.88534 * 32.42167 * 3 2 1 5 5 C 1.55548 * 111.00234 * 156.33373 * 3 2 1 6 6 C 1.54318 * 102.75724 * 153.61268 * 5 3 2 7 7 H 1.09002 * 109.88116 * 97.25665 * 6 5 3 8 8 C 1.53001 * 109.88012 * 218.26376 * 6 5 3 9 9 O 1.42901 * 109.47317 * 184.68710 * 8 6 5 10 10 N 1.47013 * 107.40530 * 337.75947 * 6 5 3 11 11 C 1.36944 * 125.64974 * 178.98263 * 10 6 5 12 12 H 1.07997 * 119.99785 * 341.05521 * 11 10 6 13 13 C 1.38814 * 119.99972 * 161.05370 * 11 10 6 14 14 N 1.31620 * 120.00031 * 157.90148 * 13 11 10 15 15 Si 1.86800 * 120.00094 * 337.89770 * 13 11 10 16 16 H 1.48496 * 109.46942 * 84.54745 * 15 13 11 17 17 H 1.48495 * 109.47272 * 204.54936 * 15 13 11 18 18 H 1.48499 * 109.47005 * 324.54705 * 15 13 11 19 19 C 1.47428 * 108.70495 * 359.02030 * 10 6 5 20 20 H 1.09005 * 109.47166 * 299.99995 * 1 2 3 21 21 H 1.08999 * 109.47095 * 60.00562 * 1 2 3 22 22 H 1.09004 * 109.46802 * 180.02562 * 1 2 3 23 23 H 1.08996 * 110.77702 * 35.32289 * 5 3 2 24 24 H 1.08996 * 110.82883 * 271.92862 * 5 3 2 25 25 H 1.08999 * 109.47058 * 304.68783 * 8 6 5 26 26 H 1.08993 * 109.47145 * 64.68770 * 8 6 5 27 27 H 0.96692 * 114.00478 * 179.97438 * 9 8 6 28 28 H 0.96999 * 119.99727 * 179.97438 * 14 13 11 29 29 H 1.09002 * 110.37020 * 142.96891 * 19 10 6 30 30 H 1.09004 * 110.36665 * 265.18117 * 19 10 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3830 2.0101 0.5460 5 6 3.4520 1.2737 0.5829 6 6 4.1209 2.4874 -0.0960 7 1 4.0940 3.3477 0.5728 8 6 5.5702 2.1509 -0.4524 9 8 6.2132 3.3129 -0.9801 10 7 3.3605 2.7813 -1.3194 11 6 3.6217 3.8003 -2.1962 12 1 4.2252 4.6398 -1.8840 13 6 3.1107 3.7543 -3.4860 14 7 2.9726 4.8646 -4.1792 15 14 2.6192 2.1165 -4.2381 16 1 1.2357 1.7753 -3.8202 17 1 2.6794 2.2137 -5.7186 18 1 3.5519 1.0586 -3.7732 19 6 2.2695 1.7977 -1.4457 20 1 -0.3634 0.5139 0.8900 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 3.9601 0.3495 0.3078 24 1 3.4352 1.3982 1.6656 25 1 6.0968 1.8191 0.4424 26 1 5.5858 1.3566 -1.1987 27 1 7.1373 3.1728 -1.2279 28 1 2.6159 4.8324 -5.0807 29 1 1.3758 2.2723 -1.8510 30 1 2.5787 0.9677 -2.0811 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306566651.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:33 Heat of formation + Delta-G solvation = -62.017993 kcal Electronic energy + Delta-G solvation = -13807.365478 eV Core-core repulsion = 11411.037635 eV Total energy + Delta-G solvation = -2396.327844 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 201.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.77753 -36.73118 -35.15172 -32.33688 -29.81236 -29.07071 -26.27714 -24.76040 -23.37072 -20.98176 -19.37815 -16.92095 -16.54130 -16.45562 -15.74340 -14.70575 -14.49416 -14.22153 -13.49749 -13.20294 -12.78049 -12.49153 -12.22269 -11.45803 -11.37249 -11.17862 -10.86332 -10.81808 -10.43540 -10.31808 -9.96552 -9.43873 -9.18381 -9.11536 -8.56594 -6.99509 -5.81453 -3.11639 3.40351 3.54201 3.57298 3.92152 4.64813 4.92806 5.00413 5.09817 5.29096 5.44162 5.49383 5.58862 5.64892 5.78227 5.81949 5.90392 6.07099 6.11668 6.17508 6.29936 6.51572 6.60732 6.88041 7.47680 7.81596 8.36444 8.46502 9.00749 9.81747 10.24857 11.35146 Molecular weight = 201.12amu Principal moments of inertia in cm(-1) A = 0.025786 B = 0.017616 C = 0.011784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.587541 B = 1589.093556 C = 2375.453145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.384 6.384 3 C 0.073 3.927 4 H 0.074 0.926 5 C -0.118 4.118 6 C 0.159 3.841 7 H 0.054 0.946 8 C 0.071 3.929 9 O -0.547 6.547 10 N -0.595 5.595 11 C -0.213 4.213 12 H 0.102 0.898 13 C 0.016 3.984 14 N -0.913 5.913 15 Si 0.877 3.123 16 H -0.289 1.289 17 H -0.304 1.304 18 H -0.279 1.279 19 C 0.091 3.909 20 H 0.039 0.961 21 H 0.042 0.958 22 H 0.081 0.919 23 H 0.077 0.923 24 H 0.074 0.926 25 H 0.028 0.972 26 H 0.038 0.962 27 H 0.360 0.640 28 H 0.260 0.740 29 H 0.059 0.941 30 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.436 -8.771 9.296 12.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.302 6.302 3 C 0.014 3.986 4 H 0.092 0.908 5 C -0.156 4.156 6 C 0.052 3.948 7 H 0.071 0.929 8 C -0.009 4.009 9 O -0.350 6.350 10 N -0.321 5.321 11 C -0.340 4.340 12 H 0.120 0.880 13 C -0.181 4.181 14 N -0.558 5.558 15 Si 0.708 3.292 16 H -0.216 1.216 17 H -0.232 1.232 18 H -0.206 1.206 19 C -0.034 4.034 20 H 0.058 0.942 21 H 0.061 0.939 22 H 0.100 0.900 23 H 0.096 0.904 24 H 0.093 0.907 25 H 0.046 0.954 26 H 0.056 0.944 27 H 0.205 0.795 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -0.962 -8.520 9.193 12.571 hybrid contribution 0.106 -1.103 -0.795 1.364 sum -0.856 -9.623 8.398 12.801 Atomic orbital electron populations 1.22740 0.81521 1.02165 1.00096 1.87836 1.19369 1.28007 1.95013 1.23473 0.94138 0.83669 0.97327 0.90804 1.22653 0.94527 0.98985 0.99441 1.21087 0.89159 0.94727 0.89796 0.92864 1.22750 0.94756 0.88007 0.95352 1.86733 1.27770 1.35098 1.85361 1.44791 1.28860 1.33319 1.25131 1.18738 1.29369 0.95483 0.90381 0.88044 1.25003 1.00225 0.96428 0.96437 1.69829 1.48668 1.25333 1.11993 0.87077 0.78140 0.86388 0.77606 1.21637 1.23177 1.20564 1.22394 0.93108 0.93221 0.94704 0.94198 0.93942 0.90042 0.90447 0.90702 0.95398 0.94388 0.79524 0.92974 0.92275 0.94836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.89 101.05 1.10 1.52 16 2 O -0.38 -6.60 10.52 -35.23 -0.37 -6.97 16 3 C 0.07 1.32 3.50 -24.37 -0.09 1.24 16 4 H 0.07 1.26 7.90 -51.93 -0.41 0.85 16 5 C -0.12 -1.97 6.24 -24.69 -0.15 -2.13 16 6 C 0.16 3.24 3.45 -66.96 -0.23 3.01 16 7 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 8 C 0.07 1.33 6.47 37.16 0.24 1.58 16 9 O -0.55 -11.09 12.21 -35.23 -0.43 -11.52 16 10 N -0.59 -14.84 2.93 -162.58 -0.48 -15.31 16 11 C -0.21 -6.22 9.40 -15.05 -0.14 -6.36 16 12 H 0.10 3.22 7.68 -52.49 -0.40 2.82 16 13 C 0.02 0.48 5.43 -17.43 -0.09 0.39 16 14 N -0.91 -29.07 13.97 55.49 0.78 -28.29 16 15 Si 0.88 23.57 24.27 -169.99 -4.13 19.45 16 16 H -0.29 -7.49 6.50 56.52 0.37 -7.13 16 17 H -0.30 -8.24 7.11 56.52 0.40 -7.83 16 18 H -0.28 -7.50 6.65 56.52 0.38 -7.12 16 19 C 0.09 2.09 4.43 -2.53 -0.01 2.08 16 20 H 0.04 0.46 8.11 -51.93 -0.42 0.04 16 21 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 22 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 23 H 0.08 1.26 7.85 -51.93 -0.41 0.85 16 24 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 25 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.36 5.36 9.12 45.56 0.42 5.78 16 28 H 0.26 7.89 8.31 -40.82 -0.34 7.55 16 29 H 0.06 1.43 6.67 -51.93 -0.35 1.09 16 30 H 0.03 0.83 5.55 -51.93 -0.29 0.54 16 LS Contribution 244.04 15.07 3.68 3.68 Total: -1.00 -34.06 244.04 -3.92 -37.98 By element: Atomic # 1 Polarization: 3.26 SS G_CDS: -3.59 Total: -0.33 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: 0.62 Total: 1.33 kcal Atomic # 7 Polarization: -43.91 SS G_CDS: 0.30 Total: -43.61 kcal Atomic # 8 Polarization: -17.69 SS G_CDS: -0.80 Total: -18.49 kcal Atomic # 14 Polarization: 23.57 SS G_CDS: -4.13 Total: 19.45 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -34.06 -3.92 -37.98 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306566651.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.039 kcal (2) G-P(sol) polarization free energy of solvation -34.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds