Wall clock time and date at job start Mon Mar 30 2020 02:52:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42902 * 114.00234 * 2 1 4 4 H 1.08999 * 110.88534 * 32.42167 * 3 2 1 5 5 C 1.55548 * 111.00234 * 156.33373 * 3 2 1 6 6 C 1.54318 * 102.75724 * 153.61268 * 5 3 2 7 7 H 1.09002 * 109.88116 * 97.25665 * 6 5 3 8 8 C 1.53001 * 109.88012 * 218.26376 * 6 5 3 9 9 O 1.42901 * 109.47317 * 184.68710 * 8 6 5 10 10 N 1.47013 * 107.40530 * 337.75947 * 6 5 3 11 11 C 1.36944 * 125.64974 * 178.98263 * 10 6 5 12 12 H 1.07997 * 119.99785 * 341.05521 * 11 10 6 13 13 C 1.38814 * 119.99972 * 161.05370 * 11 10 6 14 14 N 1.31620 * 120.00031 * 157.90148 * 13 11 10 15 15 Si 1.86800 * 120.00094 * 337.89770 * 13 11 10 16 16 H 1.48496 * 109.46942 * 84.54745 * 15 13 11 17 17 H 1.48495 * 109.47272 * 204.54936 * 15 13 11 18 18 H 1.48499 * 109.47005 * 324.54705 * 15 13 11 19 19 C 1.47428 * 108.70495 * 359.02030 * 10 6 5 20 20 H 1.09005 * 109.47166 * 299.99995 * 1 2 3 21 21 H 1.08999 * 109.47095 * 60.00562 * 1 2 3 22 22 H 1.09004 * 109.46802 * 180.02562 * 1 2 3 23 23 H 1.08996 * 110.77702 * 35.32289 * 5 3 2 24 24 H 1.08996 * 110.82883 * 271.92862 * 5 3 2 25 25 H 1.08999 * 109.47058 * 304.68783 * 8 6 5 26 26 H 1.08993 * 109.47145 * 64.68770 * 8 6 5 27 27 H 0.96692 * 114.00478 * 179.97438 * 9 8 6 28 28 H 0.96999 * 119.99727 * 179.97438 * 14 13 11 29 29 H 1.09002 * 110.37020 * 142.96891 * 19 10 6 30 30 H 1.09004 * 110.36665 * 265.18117 * 19 10 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3830 2.0101 0.5460 5 6 3.4520 1.2737 0.5829 6 6 4.1209 2.4874 -0.0960 7 1 4.0940 3.3477 0.5728 8 6 5.5702 2.1509 -0.4524 9 8 6.2132 3.3129 -0.9801 10 7 3.3605 2.7813 -1.3194 11 6 3.6217 3.8003 -2.1962 12 1 4.2252 4.6398 -1.8840 13 6 3.1107 3.7543 -3.4860 14 7 2.9726 4.8646 -4.1792 15 14 2.6192 2.1165 -4.2381 16 1 1.2357 1.7753 -3.8202 17 1 2.6794 2.2137 -5.7186 18 1 3.5519 1.0586 -3.7732 19 6 2.2695 1.7977 -1.4457 20 1 -0.3634 0.5139 0.8900 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 3.9601 0.3495 0.3078 24 1 3.4352 1.3982 1.6656 25 1 6.0968 1.8191 0.4424 26 1 5.5858 1.3566 -1.1987 27 1 7.1373 3.1728 -1.2279 28 1 2.6159 4.8324 -5.0807 29 1 1.3758 2.2723 -1.8510 30 1 2.5787 0.9677 -2.0811 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306566651.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:32 Heat of formation + Delta-G solvation = -90.677422 kcal Electronic energy + Delta-G solvation = -13808.608245 eV Core-core repulsion = 11411.037635 eV Total energy + Delta-G solvation = -2397.570610 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 201.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.30706 -38.15737 -36.74284 -34.43042 -31.69447 -30.62345 -27.53786 -26.40136 -25.25909 -22.51609 -21.07264 -18.93391 -18.05176 -17.91574 -17.52152 -16.25494 -15.90142 -15.80677 -15.22267 -14.82909 -14.54809 -14.24090 -13.95639 -13.11188 -13.01537 -12.79556 -12.43819 -12.31121 -12.21530 -12.06635 -11.67993 -11.40258 -10.86944 -10.69741 -10.49953 -9.06692 -8.12738 -5.38499 1.24973 1.33579 1.42006 2.40957 2.57878 3.15542 3.33764 3.55390 3.67775 3.97350 4.05090 4.30182 4.50129 4.51295 4.53233 4.55832 4.64568 4.75267 4.83931 4.86726 4.88454 4.97208 5.36350 5.74282 6.18760 6.22109 6.79270 7.11180 7.58429 8.10405 9.08040 Molecular weight = 201.12amu Principal moments of inertia in cm(-1) A = 0.025786 B = 0.017616 C = 0.011784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.587541 B = 1589.093556 C = 2375.453145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.393 6.393 3 C 0.084 3.916 4 H 0.088 0.912 5 C -0.103 4.103 6 C 0.146 3.854 7 H 0.049 0.951 8 C 0.072 3.928 9 O -0.581 6.581 10 N -0.614 5.614 11 C -0.193 4.193 12 H 0.066 0.934 13 C -0.043 4.043 14 N -0.961 5.961 15 Si 0.939 3.061 16 H -0.277 1.277 17 H -0.308 1.308 18 H -0.278 1.278 19 C 0.085 3.915 20 H 0.061 0.939 21 H 0.030 0.970 22 H 0.107 0.893 23 H 0.086 0.914 24 H 0.115 0.885 25 H 0.076 0.924 26 H 0.026 0.974 27 H 0.382 0.618 28 H 0.259 0.741 29 H 0.037 0.963 30 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.644 -10.978 11.297 15.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.311 6.311 3 C 0.025 3.975 4 H 0.106 0.894 5 C -0.141 4.141 6 C 0.040 3.960 7 H 0.067 0.933 8 C -0.007 4.007 9 O -0.387 6.387 10 N -0.340 5.340 11 C -0.322 4.322 12 H 0.083 0.917 13 C -0.236 4.236 14 N -0.610 5.610 15 Si 0.769 3.231 16 H -0.204 1.204 17 H -0.237 1.237 18 H -0.204 1.204 19 C -0.040 4.040 20 H 0.080 0.920 21 H 0.049 0.951 22 H 0.126 0.874 23 H 0.105 0.895 24 H 0.134 0.866 25 H 0.094 0.906 26 H 0.044 0.956 27 H 0.229 0.771 28 H 0.068 0.932 29 H 0.055 0.945 30 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -1.158 -10.773 11.237 15.610 hybrid contribution 0.190 -0.387 -1.313 1.382 sum -0.967 -11.160 9.925 14.966 Atomic orbital electron populations 1.23019 0.79625 1.04154 1.00588 1.87828 1.21452 1.26953 1.94839 1.23282 0.95714 0.84602 0.93855 0.89371 1.22647 0.92741 0.97396 1.01313 1.21409 0.90282 0.96459 0.87849 0.93282 1.22739 0.94147 0.86986 0.96867 1.86672 1.29795 1.36398 1.85827 1.44853 1.30732 1.32871 1.25536 1.18530 1.27067 0.95597 0.90969 0.91659 1.25541 1.01818 0.99086 0.97190 1.69951 1.51416 1.27228 1.12388 0.86061 0.78367 0.82446 0.76202 1.20374 1.23701 1.20444 1.22447 0.91455 0.92046 0.98095 0.92044 0.95109 0.87420 0.89493 0.86626 0.90648 0.95572 0.77060 0.93205 0.94459 0.96206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.52 10.89 113.37 1.23 1.75 16 2 O -0.39 -12.08 10.52 -148.98 -1.57 -13.65 16 3 C 0.08 2.82 3.50 32.12 0.11 2.93 16 4 H 0.09 2.70 7.90 -2.39 -0.02 2.68 16 5 C -0.10 -3.03 6.24 31.92 0.20 -2.83 16 6 C 0.15 5.60 3.45 45.34 0.16 5.76 16 7 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 8 C 0.07 2.51 6.47 71.98 0.47 2.98 16 9 O -0.58 -23.07 12.21 -148.98 -1.82 -24.89 16 10 N -0.61 -30.30 2.93 -668.27 -1.96 -32.26 16 11 C -0.19 -11.51 9.40 84.03 0.79 -10.72 16 12 H 0.07 4.31 7.68 -2.91 -0.02 4.29 16 13 C -0.04 -2.68 5.43 84.86 0.46 -2.22 16 14 N -0.96 -63.18 13.97 21.65 0.30 -62.88 16 15 Si 0.94 49.83 24.27 68.60 1.66 51.50 16 16 H -0.28 -13.97 6.50 99.48 0.65 -13.33 16 17 H -0.31 -16.43 7.11 99.48 0.71 -15.73 16 18 H -0.28 -14.52 6.65 99.48 0.66 -13.86 16 19 C 0.08 3.79 4.43 86.85 0.39 4.18 16 20 H 0.06 1.19 8.11 -2.38 -0.02 1.17 16 21 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 22 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 23 H 0.09 2.42 7.85 -2.39 -0.02 2.40 16 24 H 0.12 2.51 8.14 -2.39 -0.02 2.49 16 25 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 26 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.38 10.95 9.12 -74.06 -0.68 10.28 16 28 H 0.26 16.21 8.31 -92.71 -0.77 15.44 16 29 H 0.04 1.79 6.67 -2.39 -0.02 1.78 16 30 H 0.02 0.96 5.55 -2.39 -0.01 0.95 16 Total: -1.00 -75.06 244.04 0.77 -74.29 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: 0.34 Total: 6.05 kcal Atomic # 6 Polarization: -1.97 SS G_CDS: 3.80 Total: 1.83 kcal Atomic # 7 Polarization: -93.48 SS G_CDS: -1.66 Total: -95.14 kcal Atomic # 8 Polarization: -35.15 SS G_CDS: -3.39 Total: -38.53 kcal Atomic # 14 Polarization: 49.83 SS G_CDS: 1.66 Total: 51.50 kcal Total: -75.06 0.77 -74.29 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306566651.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.387 kcal (2) G-P(sol) polarization free energy of solvation -75.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds