Wall clock time and date at job start Mon Mar 30 2020 02:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86804 * 119.99739 * 2 1 4 4 H 1.48497 * 109.47093 * 270.00236 * 3 2 1 5 5 H 1.48504 * 109.47189 * 30.00139 * 3 2 1 6 6 H 1.48500 * 109.47392 * 149.99714 * 3 2 1 7 7 C 1.38811 * 120.00562 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99492 * 359.97438 * 7 2 1 9 9 N 1.36936 * 120.00367 * 180.02562 * 7 2 1 10 10 C 1.46499 * 120.00002 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46840 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.38674 * 305.19227 * 11 10 9 13 13 C 1.52583 * 109.38645 * 185.49487 * 11 10 9 14 14 C 1.52584 * 110.72551 * 169.17494 * 13 11 10 15 15 C 1.53099 * 109.95776 * 70.67137 * 14 13 11 16 16 S 1.81744 * 108.84129 * 296.97920 * 15 14 13 17 17 C 1.53093 * 109.39246 * 64.99953 * 11 10 9 18 18 H 0.96993 * 120.00222 * 0.02562 * 1 2 3 19 19 H 0.97000 * 119.99578 * 359.97438 * 9 7 2 20 20 H 1.09002 * 109.47391 * 59.99677 * 10 9 7 21 21 H 1.09001 * 109.46813 * 299.99734 * 10 9 7 22 22 H 1.09005 * 109.22880 * 289.49227 * 13 11 10 23 23 H 1.08996 * 109.22836 * 48.85448 * 13 11 10 24 24 H 1.08998 * 109.39011 * 310.52360 * 14 13 11 25 25 H 1.08995 * 109.31206 * 190.77100 * 14 13 11 26 26 H 1.09003 * 109.57466 * 177.16723 * 15 14 13 27 27 H 1.09004 * 109.57488 * 56.78334 * 15 14 13 28 28 H 1.09000 * 109.57658 * 302.97724 * 17 11 10 29 29 H 1.08998 * 109.57726 * 63.36168 * 17 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4404 0.7001 7 6 2.0104 -1.2021 0.0005 8 1 1.4704 -2.1374 0.0014 9 7 3.3797 -1.2020 0.0011 10 6 4.1123 -2.4707 0.0011 11 6 5.6165 -2.1910 0.0024 12 1 5.8645 -1.5419 -0.8374 13 6 6.3765 -3.5069 -0.1355 14 6 7.8562 -3.2502 -0.4052 15 6 8.5275 -2.6921 0.8525 16 16 7.7736 -1.0889 1.2580 17 6 6.0037 -1.4987 1.3117 18 1 -0.4850 0.8400 -0.0004 19 1 3.8647 -0.3619 0.0007 20 1 3.8493 -3.0422 -0.8891 21 1 3.8486 -3.0424 0.8909 22 1 6.2738 -4.0791 0.7866 23 1 5.9552 -4.0799 -0.9614 24 1 7.9564 -2.5312 -1.2182 25 1 8.3386 -4.1858 -0.6881 26 1 9.5936 -2.5584 0.6687 27 1 8.3820 -3.3843 1.6819 28 1 5.4207 -0.5850 1.4280 29 1 5.8089 -2.1675 2.1500 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306614679.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:56 Heat of formation + Delta-G solvation = -6.479213 kcal Electronic energy + Delta-G solvation = -11201.537315 eV Core-core repulsion = 9250.370684 eV Total energy + Delta-G solvation = -1951.166630 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 201.088 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -37.66362 -34.52010 -32.12208 -30.34701 -27.28921 -25.80294 -22.82023 -21.14733 -20.18410 -17.69310 -16.48463 -15.23178 -14.90960 -14.39497 -13.89613 -13.59880 -13.30871 -13.02669 -12.73170 -12.28163 -11.78071 -11.35969 -11.31106 -11.22065 -10.90496 -10.62269 -10.22867 -10.06988 -9.58421 -9.52575 -8.90714 -7.61656 -7.24523 -5.77558 -3.13384 1.86586 2.62822 3.37729 3.41117 3.45919 4.58856 4.64734 4.69857 4.89669 5.00862 5.22981 5.36409 5.46866 5.53393 5.61227 5.66259 5.78141 5.97296 5.99208 6.01590 6.22003 6.25935 6.61212 6.72855 7.98144 8.41410 9.20091 9.92541 10.12116 11.40855 Molecular weight = 201.09amu Principal moments of inertia in cm(-1) A = 0.052976 B = 0.009162 C = 0.008157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.416995 B = 3055.446550 C = 3431.826657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.005 3.995 3 Si 0.883 3.117 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.246 4.246 8 H 0.090 0.910 9 N -0.756 5.756 10 C 0.165 3.835 11 C -0.100 4.100 12 H 0.082 0.918 13 C -0.121 4.121 14 C -0.120 4.120 15 C -0.079 4.079 16 S -0.287 6.287 17 C -0.065 4.065 18 H 0.260 0.740 19 H 0.361 0.639 20 H 0.031 0.969 21 H 0.028 0.972 22 H 0.063 0.937 23 H 0.074 0.926 24 H 0.075 0.925 25 H 0.071 0.929 26 H 0.099 0.901 27 H 0.080 0.920 28 H 0.109 0.891 29 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.608 -6.039 0.785 17.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.190 4.190 3 Si 0.713 3.287 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.375 4.375 8 H 0.108 0.892 9 N -0.402 5.402 10 C 0.036 3.964 11 C -0.120 4.120 12 H 0.100 0.900 13 C -0.159 4.159 14 C -0.159 4.159 15 C -0.228 4.228 16 S -0.060 6.060 17 C -0.213 4.213 18 H 0.070 0.930 19 H 0.194 0.806 20 H 0.049 0.951 21 H 0.046 0.954 22 H 0.082 0.918 23 H 0.093 0.907 24 H 0.094 0.906 25 H 0.089 0.911 26 H 0.117 0.883 27 H 0.099 0.901 28 H 0.127 0.873 29 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 16.893 -5.122 0.990 17.681 hybrid contribution -0.083 0.122 -0.120 0.190 sum 16.810 -5.001 0.870 17.560 Atomic orbital electron populations 1.69699 1.05107 1.25860 1.57528 1.24666 0.95226 0.97190 1.01957 0.86571 0.79185 0.85002 0.77893 1.20974 1.21640 1.20368 1.19057 0.80611 0.94758 1.43121 0.89210 1.42748 1.04083 1.02186 1.91187 1.20677 0.87445 0.89398 0.98862 1.21589 0.97014 0.96619 0.96787 0.89952 1.21514 0.94299 0.97432 1.02664 1.21720 0.95775 1.01444 0.96990 1.23410 1.02190 0.96343 1.00832 1.86846 1.07785 1.18050 1.93291 1.23571 0.91759 1.05199 1.00739 0.93026 0.80615 0.95070 0.95447 0.91792 0.90735 0.90647 0.91094 0.88296 0.90125 0.87278 0.89854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.57 13.97 55.49 0.78 -28.80 15 2 C 0.01 0.16 5.50 -17.43 -0.10 0.06 15 3 Si 0.88 22.40 27.74 -169.99 -4.71 17.69 15 4 H -0.28 -7.14 7.11 56.52 0.40 -6.73 15 5 H -0.29 -7.43 7.11 56.52 0.40 -7.03 15 6 H -0.28 -6.64 6.52 56.52 0.37 -6.27 15 7 C -0.25 -7.01 10.47 -15.06 -0.16 -7.17 15 8 H 0.09 2.73 8.06 -52.48 -0.42 2.31 15 9 N -0.76 -18.00 5.10 -59.91 -0.31 -18.31 15 10 C 0.17 3.14 5.63 -4.04 -0.02 3.11 15 11 C -0.10 -1.51 2.07 -90.79 -0.19 -1.70 15 12 H 0.08 1.32 8.05 -51.93 -0.42 0.90 15 13 C -0.12 -1.44 4.92 -27.16 -0.13 -1.58 15 14 C -0.12 -1.24 5.75 -26.89 -0.15 -1.39 15 15 C -0.08 -0.84 6.45 37.21 0.24 -0.60 15 16 S -0.29 -4.07 22.33 -107.50 -2.40 -6.47 15 17 C -0.06 -1.00 5.63 37.21 0.21 -0.79 15 18 H 0.26 7.82 8.31 -40.82 -0.34 7.48 15 19 H 0.36 8.44 4.71 -40.82 -0.19 8.24 15 20 H 0.03 0.60 8.08 -51.93 -0.42 0.18 15 21 H 0.03 0.53 8.14 -51.93 -0.42 0.11 15 22 H 0.06 0.73 8.08 -51.93 -0.42 0.31 15 23 H 0.07 0.85 8.04 -51.93 -0.42 0.43 15 24 H 0.07 0.82 8.05 -51.93 -0.42 0.41 15 25 H 0.07 0.59 8.14 -51.93 -0.42 0.17 15 26 H 0.10 0.90 8.14 -51.93 -0.42 0.48 15 27 H 0.08 0.80 8.14 -51.93 -0.42 0.37 15 28 H 0.11 1.92 7.12 -51.93 -0.37 1.55 15 29 H 0.08 1.22 8.14 -51.93 -0.42 0.80 15 LS Contribution 245.52 15.07 3.70 3.70 Total: -1.00 -30.91 245.52 -7.61 -38.51 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -4.36 Total: 3.71 kcal Atomic # 6 Polarization: -9.74 SS G_CDS: -0.30 Total: -10.05 kcal Atomic # 7 Polarization: -47.57 SS G_CDS: 0.47 Total: -47.10 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -4.71 Total: 17.69 kcal Atomic # 16 Polarization: -4.07 SS G_CDS: -2.40 Total: -6.47 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -30.91 -7.61 -38.51 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306614679.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.035 kcal (2) G-P(sol) polarization free energy of solvation -30.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds