Wall clock time and date at job start Mon Mar 30 2020 02:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86804 * 119.99739 * 2 1 4 4 H 1.48497 * 109.47093 * 270.00236 * 3 2 1 5 5 H 1.48504 * 109.47189 * 30.00139 * 3 2 1 6 6 H 1.48500 * 109.47392 * 149.99714 * 3 2 1 7 7 C 1.38811 * 120.00562 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99492 * 359.97438 * 7 2 1 9 9 N 1.36936 * 120.00367 * 180.02562 * 7 2 1 10 10 C 1.46499 * 120.00002 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46840 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.38674 * 305.19227 * 11 10 9 13 13 C 1.52583 * 109.38645 * 185.49487 * 11 10 9 14 14 C 1.52584 * 110.72551 * 169.17494 * 13 11 10 15 15 C 1.53099 * 109.95776 * 70.67137 * 14 13 11 16 16 S 1.81744 * 108.84129 * 296.97920 * 15 14 13 17 17 C 1.53093 * 109.39246 * 64.99953 * 11 10 9 18 18 H 0.96993 * 120.00222 * 0.02562 * 1 2 3 19 19 H 0.97000 * 119.99578 * 359.97438 * 9 7 2 20 20 H 1.09002 * 109.47391 * 59.99677 * 10 9 7 21 21 H 1.09001 * 109.46813 * 299.99734 * 10 9 7 22 22 H 1.09005 * 109.22880 * 289.49227 * 13 11 10 23 23 H 1.08996 * 109.22836 * 48.85448 * 13 11 10 24 24 H 1.08998 * 109.39011 * 310.52360 * 14 13 11 25 25 H 1.08995 * 109.31206 * 190.77100 * 14 13 11 26 26 H 1.09003 * 109.57466 * 177.16723 * 15 14 13 27 27 H 1.09004 * 109.57488 * 56.78334 * 15 14 13 28 28 H 1.09000 * 109.57658 * 302.97724 * 17 11 10 29 29 H 1.08998 * 109.57726 * 63.36168 * 17 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4404 0.7001 7 6 2.0104 -1.2021 0.0005 8 1 1.4704 -2.1374 0.0014 9 7 3.3797 -1.2020 0.0011 10 6 4.1123 -2.4707 0.0011 11 6 5.6165 -2.1910 0.0024 12 1 5.8645 -1.5419 -0.8374 13 6 6.3765 -3.5069 -0.1355 14 6 7.8562 -3.2502 -0.4052 15 6 8.5275 -2.6921 0.8525 16 16 7.7736 -1.0889 1.2580 17 6 6.0037 -1.4987 1.3117 18 1 -0.4850 0.8400 -0.0004 19 1 3.8647 -0.3619 0.0007 20 1 3.8493 -3.0422 -0.8891 21 1 3.8486 -3.0424 0.8909 22 1 6.2738 -4.0791 0.7866 23 1 5.9552 -4.0799 -0.9614 24 1 7.9564 -2.5312 -1.2182 25 1 8.3386 -4.1858 -0.6881 26 1 9.5936 -2.5584 0.6687 27 1 8.3820 -3.3843 1.6819 28 1 5.4207 -0.5850 1.4280 29 1 5.8089 -2.1675 2.1500 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306614679.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:56 Heat of formation + Delta-G solvation = -26.089739 kcal Electronic energy + Delta-G solvation = -11202.387691 eV Core-core repulsion = 9250.370684 eV Total energy + Delta-G solvation = -1952.017007 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 201.088 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.91135 -36.17481 -33.84682 -32.03268 -28.39048 -27.38811 -24.48895 -22.46185 -21.44548 -19.69494 -17.65968 -16.69771 -16.34545 -15.91562 -15.36636 -15.00417 -14.61846 -14.31640 -14.10256 -13.85833 -13.18026 -13.05629 -12.83595 -12.32370 -12.28618 -12.09995 -11.87765 -11.74972 -11.22225 -11.03375 -10.58613 -9.32809 -8.70794 -8.05821 -5.39187 0.82335 1.35472 1.37731 1.44786 1.59924 2.44980 3.25774 3.49198 3.67892 3.90810 3.95315 4.01970 4.23719 4.35202 4.55626 4.62698 4.79419 4.82149 4.86529 4.98321 5.09305 5.17784 5.23571 5.41497 5.72834 6.18474 7.04682 7.80916 7.99229 9.15812 Molecular weight = 201.09amu Principal moments of inertia in cm(-1) A = 0.052976 B = 0.009162 C = 0.008157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.416995 B = 3055.446550 C = 3431.826657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.983 5.983 2 C -0.060 4.060 3 Si 0.951 3.049 4 H -0.277 1.277 5 H -0.293 1.293 6 H -0.256 1.256 7 C -0.236 4.236 8 H 0.059 0.941 9 N -0.759 5.759 10 C 0.161 3.839 11 C -0.088 4.088 12 H 0.075 0.925 13 C -0.118 4.118 14 C -0.115 4.115 15 C -0.068 4.068 16 S -0.318 6.318 17 C -0.062 4.062 18 H 0.259 0.741 19 H 0.364 0.636 20 H 0.032 0.968 21 H 0.027 0.973 22 H 0.072 0.928 23 H 0.081 0.919 24 H 0.069 0.931 25 H 0.101 0.899 26 H 0.120 0.880 27 H 0.093 0.907 28 H 0.082 0.918 29 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.339 -6.526 0.654 20.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.633 5.633 2 C -0.252 4.252 3 Si 0.778 3.222 4 H -0.203 1.203 5 H -0.220 1.220 6 H -0.181 1.181 7 C -0.367 4.367 8 H 0.077 0.923 9 N -0.405 5.405 10 C 0.034 3.966 11 C -0.108 4.108 12 H 0.093 0.907 13 C -0.156 4.156 14 C -0.154 4.154 15 C -0.216 4.216 16 S -0.091 6.091 17 C -0.210 4.210 18 H 0.068 0.932 19 H 0.198 0.802 20 H 0.050 0.950 21 H 0.045 0.955 22 H 0.090 0.910 23 H 0.100 0.900 24 H 0.088 0.912 25 H 0.120 0.880 26 H 0.138 0.862 27 H 0.111 0.889 28 H 0.101 0.899 29 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 19.677 -5.640 0.859 20.487 hybrid contribution -0.911 0.139 -0.080 0.925 sum 18.766 -5.500 0.779 19.571 Atomic orbital electron populations 1.69871 1.07057 1.26731 1.59658 1.25464 0.96069 1.01079 1.02588 0.85470 0.78536 0.79929 0.78216 1.20294 1.21984 1.18097 1.19060 0.82723 0.93557 1.41370 0.92345 1.42774 1.02531 1.04209 1.90970 1.20868 0.89827 0.87345 0.98599 1.21477 0.94371 0.98510 0.96477 0.90705 1.21504 0.95218 0.95349 1.03491 1.21694 0.94397 1.02750 0.96534 1.23558 1.02822 0.93805 1.01431 1.86959 1.06857 1.21661 1.93621 1.23410 0.92666 1.04019 1.00906 0.93245 0.80212 0.95035 0.95504 0.90955 0.89991 0.91196 0.88035 0.86220 0.88853 0.89937 0.89405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.70 13.97 21.65 0.30 -63.40 15 2 C -0.06 -3.61 5.50 84.86 0.47 -3.15 15 3 Si 0.95 46.46 27.74 68.60 1.90 48.36 15 4 H -0.28 -13.18 7.11 99.48 0.71 -12.47 15 5 H -0.29 -14.41 7.11 99.48 0.71 -13.71 15 6 H -0.26 -11.47 6.52 99.48 0.65 -10.82 15 7 C -0.24 -13.68 10.47 84.03 0.88 -12.80 15 8 H 0.06 3.68 8.06 -2.91 -0.02 3.66 15 9 N -0.76 -35.87 5.10 -343.45 -1.75 -37.63 15 10 C 0.16 6.00 5.63 86.38 0.49 6.49 15 11 C -0.09 -2.52 2.07 -10.90 -0.02 -2.54 15 12 H 0.07 2.27 8.05 -2.39 -0.02 2.25 15 13 C -0.12 -2.44 4.92 30.32 0.15 -2.29 15 14 C -0.12 -1.89 5.75 30.49 0.18 -1.72 15 15 C -0.07 -1.18 6.45 72.02 0.46 -0.72 15 16 S -0.32 -8.33 22.33 -56.49 -1.26 -9.59 15 17 C -0.06 -1.82 5.63 72.01 0.41 -1.41 15 18 H 0.26 15.94 8.31 -92.71 -0.77 15.17 15 19 H 0.36 16.67 4.71 -92.71 -0.44 16.23 15 20 H 0.03 1.19 8.08 -2.39 -0.02 1.17 15 21 H 0.03 1.01 8.14 -2.39 -0.02 1.00 15 22 H 0.07 1.40 8.08 -2.38 -0.02 1.39 15 23 H 0.08 1.60 8.04 -2.39 -0.02 1.58 15 24 H 0.07 1.27 8.05 -2.39 -0.02 1.26 15 25 H 0.10 1.16 8.14 -2.39 -0.02 1.14 15 26 H 0.12 1.65 8.14 -2.39 -0.02 1.63 15 27 H 0.09 1.44 8.14 -2.39 -0.02 1.42 15 28 H 0.08 2.85 7.12 -2.39 -0.02 2.84 15 29 H 0.09 2.44 8.14 -2.39 -0.02 2.42 15 Total: -1.00 -67.05 245.52 2.82 -64.23 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: 0.62 Total: 16.16 kcal Atomic # 6 Polarization: -21.14 SS G_CDS: 3.01 Total: -18.13 kcal Atomic # 7 Polarization: -99.58 SS G_CDS: -1.45 Total: -101.03 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 1.90 Total: 48.36 kcal Atomic # 16 Polarization: -8.33 SS G_CDS: -1.26 Total: -9.59 kcal Total: -67.05 2.82 -64.23 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306614679.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.143 kcal (2) G-P(sol) polarization free energy of solvation -67.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds