Wall clock time and date at job start Mon Mar 30 2020 02:52:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42898 * 114.00334 * 2 1 4 4 H 1.08997 * 110.88323 * 32.42364 * 3 2 1 5 5 C 1.55150 * 111.00630 * 156.34933 * 3 2 1 6 6 C 1.54333 * 103.01986 * 153.38120 * 5 3 2 7 7 H 1.09000 * 109.99017 * 218.66341 * 6 5 3 8 8 C 1.53006 * 109.77739 * 97.49764 * 6 5 3 9 9 O 1.42898 * 109.46839 * 175.80621 * 8 6 5 10 10 N 1.47014 * 107.26595 * 338.14113 * 6 5 3 11 11 C 1.36942 * 125.64836 * 178.84927 * 10 6 5 12 12 H 1.07998 * 120.00162 * 29.88819 * 11 10 6 13 13 C 1.38810 * 120.00272 * 209.88899 * 11 10 6 14 14 N 1.31615 * 120.00564 * 196.30420 * 13 11 10 15 15 Si 1.86808 * 119.99737 * 16.29996 * 13 11 10 16 16 H 1.48498 * 109.47231 * 273.35487 * 15 13 11 17 17 H 1.48499 * 109.46997 * 33.35880 * 15 13 11 18 18 H 1.48500 * 109.46920 * 153.35557 * 15 13 11 19 19 C 1.47428 * 108.70556 * 358.58561 * 10 6 5 20 20 H 1.09000 * 109.46968 * 60.00100 * 1 2 3 21 21 H 1.09007 * 109.47574 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.47381 * 300.00246 * 1 2 3 23 23 H 1.09001 * 110.71991 * 271.93641 * 5 3 2 24 24 H 1.09002 * 110.72343 * 35.03572 * 5 3 2 25 25 H 1.09000 * 109.46914 * 295.80331 * 8 6 5 26 26 H 1.09002 * 109.47243 * 55.80669 * 8 6 5 27 27 H 0.96706 * 113.99884 * 180.02562 * 9 8 6 28 28 H 0.96997 * 120.00484 * 180.02562 * 14 13 11 29 29 H 1.08991 * 110.36732 * 143.19626 * 19 10 6 30 30 H 1.09001 * 110.36382 * 265.51822 * 19 10 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3830 2.0100 0.5460 5 6 3.4485 1.2738 0.5810 6 6 4.1250 2.4827 -0.0992 7 1 5.1550 2.2368 -0.3573 8 6 4.0950 3.6895 0.8410 9 8 4.8078 4.7752 0.2452 10 7 3.3611 2.7805 -1.3195 11 6 3.6237 3.7987 -2.1969 12 1 4.6367 4.1482 -2.3310 13 6 2.5878 4.3815 -2.9139 14 7 2.8527 5.1186 -3.9716 15 14 0.8176 4.1196 -2.3775 16 1 0.2967 2.8682 -2.9839 17 1 0.7594 4.0142 -0.8975 18 1 -0.0102 5.2684 -2.8249 19 6 2.2695 1.7977 -1.4457 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5139 0.8899 23 1 3.4298 1.3982 1.6638 24 1 3.9539 0.3470 0.3094 25 1 3.0613 3.9868 1.0176 26 1 4.5636 3.4236 1.7886 27 1 4.8301 5.5757 0.7874 28 1 2.1289 5.5261 -4.4724 29 1 1.3762 2.2729 -1.8507 30 1 2.5788 0.9667 -2.0797 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306727343.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:40 Heat of formation + Delta-G solvation = -56.763109 kcal Electronic energy + Delta-G solvation = -13898.179192 eV Core-core repulsion = 11502.079217 eV Total energy + Delta-G solvation = -2396.099975 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 201.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.84637 -36.72063 -35.12181 -32.36381 -29.85662 -28.99755 -26.29599 -24.69139 -23.58496 -20.87876 -19.32984 -17.30712 -16.48069 -16.24953 -15.85709 -14.79128 -14.55194 -14.05044 -13.87356 -12.87230 -12.71997 -12.59793 -12.18356 -11.71922 -11.43254 -11.18060 -11.03202 -10.80059 -10.50950 -10.23497 -9.96729 -9.41298 -9.24058 -9.06372 -8.46458 -6.89197 -5.84504 -3.22854 3.30294 3.41981 3.48134 3.92453 4.57970 4.83573 5.02650 5.13776 5.33916 5.42059 5.48640 5.56115 5.59552 5.73146 5.78331 5.89773 6.03327 6.12965 6.20734 6.33442 6.43795 6.64222 6.87248 7.47028 7.90585 8.39288 8.46069 8.99225 9.77941 10.26413 11.32806 Molecular weight = 201.12amu Principal moments of inertia in cm(-1) A = 0.026879 B = 0.018245 C = 0.012346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.440527 B = 1534.310249 C = 2267.448361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.381 6.381 3 C 0.067 3.933 4 H 0.067 0.933 5 C -0.117 4.117 6 C 0.159 3.841 7 H 0.054 0.946 8 C 0.072 3.928 9 O -0.544 6.544 10 N -0.597 5.597 11 C -0.211 4.211 12 H 0.095 0.905 13 C 0.021 3.979 14 N -0.914 5.914 15 Si 0.888 3.112 16 H -0.287 1.287 17 H -0.280 1.280 18 H -0.305 1.305 19 C 0.094 3.906 20 H 0.040 0.960 21 H 0.083 0.917 22 H 0.038 0.962 23 H 0.072 0.928 24 H 0.082 0.918 25 H 0.035 0.965 26 H 0.027 0.973 27 H 0.359 0.641 28 H 0.261 0.739 29 H 0.044 0.956 30 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.785 -6.597 11.049 13.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.299 6.299 3 C 0.009 3.991 4 H 0.085 0.915 5 C -0.155 4.155 6 C 0.052 3.948 7 H 0.072 0.928 8 C -0.008 4.008 9 O -0.346 6.346 10 N -0.324 5.324 11 C -0.338 4.338 12 H 0.113 0.887 13 C -0.177 4.177 14 N -0.559 5.559 15 Si 0.722 3.278 16 H -0.216 1.216 17 H -0.207 1.207 18 H -0.233 1.233 19 C -0.030 4.030 20 H 0.059 0.941 21 H 0.102 0.898 22 H 0.057 0.943 23 H 0.091 0.909 24 H 0.101 0.899 25 H 0.053 0.947 26 H 0.045 0.955 27 H 0.203 0.797 28 H 0.071 0.929 29 H 0.061 0.939 30 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -2.634 -7.038 10.363 12.801 hybrid contribution -1.543 0.614 0.738 1.817 sum -4.176 -6.424 11.101 13.489 Atomic orbital electron populations 1.22748 0.81650 1.02242 0.99993 1.87837 1.19231 1.27785 1.95021 1.23436 0.94420 0.83696 0.97569 0.91454 1.22579 0.94327 0.99140 0.99441 1.21166 0.96479 0.90375 0.86805 0.92817 1.22757 0.94484 0.89284 0.94256 1.86767 1.76616 1.23301 1.47915 1.44649 1.33091 1.31620 1.23015 1.18633 0.94625 1.07505 1.13082 0.88725 1.25220 0.97267 0.97444 0.97759 1.69754 1.31717 1.36894 1.17492 0.86822 0.87033 0.75172 0.78761 1.21615 1.20676 1.23330 1.22417 0.93037 0.93260 0.94331 0.94119 0.89802 0.94325 0.90930 0.89905 0.94679 0.95478 0.79651 0.92879 0.93864 0.93830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.89 101.05 1.10 1.52 16 2 O -0.38 -6.59 10.51 -35.23 -0.37 -6.96 16 3 C 0.07 1.26 3.49 -24.59 -0.09 1.18 16 4 H 0.07 1.25 7.90 -51.93 -0.41 0.84 16 5 C -0.12 -1.97 6.22 -24.90 -0.15 -2.13 16 6 C 0.16 3.25 3.49 -66.95 -0.23 3.01 16 7 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 8 C 0.07 1.35 6.46 37.16 0.24 1.59 16 9 O -0.54 -11.12 12.35 -35.23 -0.44 -11.56 16 10 N -0.60 -14.95 2.80 -162.57 -0.46 -15.41 16 11 C -0.21 -6.18 9.17 -15.06 -0.14 -6.32 16 12 H 0.10 3.03 7.99 -52.49 -0.42 2.61 16 13 C 0.02 0.63 5.47 -17.43 -0.10 0.53 16 14 N -0.91 -29.04 13.97 55.49 0.78 -28.26 16 15 Si 0.89 23.33 24.74 -169.99 -4.21 19.13 16 16 H -0.29 -7.34 6.61 56.52 0.37 -6.96 16 17 H -0.28 -7.11 7.10 56.52 0.40 -6.71 16 18 H -0.30 -8.07 7.11 56.52 0.40 -7.67 16 19 C 0.09 2.17 5.96 -2.53 -0.02 2.16 16 20 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 21 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 22 H 0.04 0.48 8.11 -51.93 -0.42 0.06 16 23 H 0.07 1.02 7.80 -51.93 -0.40 0.61 16 24 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 25 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.03 0.41 8.10 -51.93 -0.42 -0.01 16 27 H 0.36 5.42 9.12 45.56 0.42 5.83 16 28 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 29 H 0.04 1.07 2.34 -51.93 -0.12 0.95 16 30 H 0.04 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 244.86 15.07 3.69 3.69 Total: -1.00 -33.73 244.86 -3.87 -37.60 By element: Atomic # 1 Polarization: 3.71 SS G_CDS: -3.48 Total: 0.23 kcal Atomic # 6 Polarization: 0.93 SS G_CDS: 0.62 Total: 1.55 kcal Atomic # 7 Polarization: -43.99 SS G_CDS: 0.32 Total: -43.67 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: -0.81 Total: -18.52 kcal Atomic # 14 Polarization: 23.33 SS G_CDS: -4.21 Total: 19.13 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -33.73 -3.87 -37.60 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306727343.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.168 kcal (2) G-P(sol) polarization free energy of solvation -33.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds