Wall clock time and date at job start Mon Mar 30 2020 02:52:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42898 * 114.00334 * 2 1 4 4 H 1.08997 * 110.88323 * 32.42364 * 3 2 1 5 5 C 1.55150 * 111.00630 * 156.34933 * 3 2 1 6 6 C 1.54333 * 103.01986 * 153.38120 * 5 3 2 7 7 H 1.09000 * 109.99017 * 218.66341 * 6 5 3 8 8 C 1.53006 * 109.77739 * 97.49764 * 6 5 3 9 9 O 1.42898 * 109.46839 * 175.80621 * 8 6 5 10 10 N 1.47014 * 107.26595 * 338.14113 * 6 5 3 11 11 C 1.36942 * 125.64836 * 178.84927 * 10 6 5 12 12 H 1.07998 * 120.00162 * 29.88819 * 11 10 6 13 13 C 1.38810 * 120.00272 * 209.88899 * 11 10 6 14 14 N 1.31615 * 120.00564 * 196.30420 * 13 11 10 15 15 Si 1.86808 * 119.99737 * 16.29996 * 13 11 10 16 16 H 1.48498 * 109.47231 * 273.35487 * 15 13 11 17 17 H 1.48499 * 109.46997 * 33.35880 * 15 13 11 18 18 H 1.48500 * 109.46920 * 153.35557 * 15 13 11 19 19 C 1.47428 * 108.70556 * 358.58561 * 10 6 5 20 20 H 1.09000 * 109.46968 * 60.00100 * 1 2 3 21 21 H 1.09007 * 109.47574 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.47381 * 300.00246 * 1 2 3 23 23 H 1.09001 * 110.71991 * 271.93641 * 5 3 2 24 24 H 1.09002 * 110.72343 * 35.03572 * 5 3 2 25 25 H 1.09000 * 109.46914 * 295.80331 * 8 6 5 26 26 H 1.09002 * 109.47243 * 55.80669 * 8 6 5 27 27 H 0.96706 * 113.99884 * 180.02562 * 9 8 6 28 28 H 0.96997 * 120.00484 * 180.02562 * 14 13 11 29 29 H 1.08991 * 110.36732 * 143.19626 * 19 10 6 30 30 H 1.09001 * 110.36382 * 265.51822 * 19 10 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3830 2.0100 0.5460 5 6 3.4485 1.2738 0.5810 6 6 4.1250 2.4827 -0.0992 7 1 5.1550 2.2368 -0.3573 8 6 4.0950 3.6895 0.8410 9 8 4.8078 4.7752 0.2452 10 7 3.3611 2.7805 -1.3195 11 6 3.6237 3.7987 -2.1969 12 1 4.6367 4.1482 -2.3310 13 6 2.5878 4.3815 -2.9139 14 7 2.8527 5.1186 -3.9716 15 14 0.8176 4.1196 -2.3775 16 1 0.2967 2.8682 -2.9839 17 1 0.7594 4.0142 -0.8975 18 1 -0.0102 5.2684 -2.8249 19 6 2.2695 1.7977 -1.4457 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5139 0.8899 23 1 3.4298 1.3982 1.6638 24 1 3.9539 0.3470 0.3094 25 1 3.0613 3.9868 1.0176 26 1 4.5636 3.4236 1.7886 27 1 4.8301 5.5757 0.7874 28 1 2.1289 5.5261 -4.4724 29 1 1.3762 2.2729 -1.8507 30 1 2.5788 0.9667 -2.0797 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306727343.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:40 Heat of formation + Delta-G solvation = -84.984241 kcal Electronic energy + Delta-G solvation = -13899.402952 eV Core-core repulsion = 11502.079217 eV Total energy + Delta-G solvation = -2397.323735 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 201.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.38183 -38.14835 -36.71425 -34.45359 -31.73964 -30.55861 -27.57564 -26.30244 -25.44452 -22.48728 -20.98782 -19.19506 -18.12279 -17.86822 -17.52879 -16.38869 -15.82726 -15.54049 -15.49175 -14.77274 -14.51295 -14.40594 -13.74661 -13.31721 -13.08803 -12.75606 -12.58255 -12.46076 -12.17731 -11.91504 -11.73451 -11.29258 -10.80053 -10.64772 -10.49960 -8.93598 -8.14224 -5.49791 1.20694 1.29556 1.41765 2.38792 2.58585 3.09044 3.37275 3.55369 3.66319 3.95340 3.98597 4.31024 4.43509 4.47446 4.51015 4.53405 4.61418 4.72680 4.81475 4.88972 4.93051 5.02344 5.32450 5.81870 6.16786 6.20637 6.79904 7.14604 7.55010 8.12292 9.07358 Molecular weight = 201.12amu Principal moments of inertia in cm(-1) A = 0.026879 B = 0.018245 C = 0.012346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.440527 B = 1534.310249 C = 2267.448361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.387 6.387 3 C 0.080 3.920 4 H 0.077 0.923 5 C -0.102 4.102 6 C 0.145 3.855 7 H 0.042 0.958 8 C 0.073 3.927 9 O -0.580 6.580 10 N -0.615 5.615 11 C -0.196 4.196 12 H 0.051 0.949 13 C -0.042 4.042 14 N -0.964 5.964 15 Si 0.955 3.045 16 H -0.279 1.279 17 H -0.262 1.262 18 H -0.310 1.310 19 C 0.085 3.915 20 H 0.028 0.972 21 H 0.112 0.888 22 H 0.058 0.942 23 H 0.114 0.886 24 H 0.091 0.909 25 H 0.030 0.970 26 H 0.076 0.924 27 H 0.381 0.619 28 H 0.260 0.740 29 H 0.028 0.972 30 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.031 -8.091 13.824 16.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.305 6.305 3 C 0.021 3.979 4 H 0.094 0.906 5 C -0.139 4.139 6 C 0.039 3.961 7 H 0.059 0.941 8 C -0.006 4.006 9 O -0.386 6.386 10 N -0.342 5.342 11 C -0.325 4.325 12 H 0.068 0.932 13 C -0.235 4.235 14 N -0.612 5.612 15 Si 0.787 3.213 16 H -0.208 1.208 17 H -0.187 1.187 18 H -0.239 1.239 19 C -0.040 4.040 20 H 0.047 0.953 21 H 0.131 0.869 22 H 0.077 0.923 23 H 0.132 0.868 24 H 0.109 0.891 25 H 0.049 0.951 26 H 0.094 0.906 27 H 0.228 0.772 28 H 0.069 0.931 29 H 0.045 0.955 30 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -3.876 -8.563 13.196 16.201 hybrid contribution -1.041 1.011 -0.139 1.458 sum -4.917 -7.552 13.057 15.865 Atomic orbital electron populations 1.23040 0.79808 1.04383 1.00359 1.87837 1.21245 1.26594 1.94838 1.23233 0.95856 0.84588 0.94263 0.90552 1.22554 0.92477 0.97530 1.01360 1.21425 0.95589 0.93080 0.85963 0.94056 1.22756 0.94643 0.87898 0.95303 1.86709 1.76978 1.25005 1.49903 1.44694 1.34213 1.30943 1.24381 1.18338 0.92794 1.07917 1.13469 0.93164 1.25855 1.01723 0.98110 0.97850 1.69912 1.32944 1.39264 1.19087 0.85725 0.81417 0.74940 0.79211 1.20758 1.18704 1.23898 1.22550 0.91547 0.92277 0.97620 0.95334 0.86941 0.92331 0.86754 0.89058 0.95125 0.90633 0.77188 0.93089 0.95466 0.94951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.48 10.89 113.37 1.23 1.72 16 2 O -0.39 -11.93 10.51 -148.98 -1.57 -13.49 16 3 C 0.08 2.70 3.49 31.98 0.11 2.82 16 4 H 0.08 2.49 7.90 -2.39 -0.02 2.47 16 5 C -0.10 -3.02 6.22 31.78 0.20 -2.82 16 6 C 0.15 5.66 3.49 45.35 0.16 5.82 16 7 H 0.04 1.70 8.14 -2.39 -0.02 1.69 16 8 C 0.07 2.52 6.46 71.98 0.46 2.98 16 9 O -0.58 -23.24 12.35 -148.98 -1.84 -25.08 16 10 N -0.62 -30.56 2.80 -668.25 -1.87 -32.43 16 11 C -0.20 -11.79 9.17 84.03 0.77 -11.02 16 12 H 0.05 3.40 7.99 -2.91 -0.02 3.38 16 13 C -0.04 -2.58 5.47 84.86 0.46 -2.12 16 14 N -0.96 -63.47 13.97 21.65 0.30 -63.17 16 15 Si 0.96 48.76 24.74 68.60 1.70 50.46 16 16 H -0.28 -13.71 6.61 99.48 0.66 -13.05 16 17 H -0.26 -12.40 7.10 99.48 0.71 -11.70 16 18 H -0.31 -15.89 7.11 99.48 0.71 -15.19 16 19 C 0.08 3.78 5.96 86.85 0.52 4.30 16 20 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 21 H 0.11 2.02 8.14 -2.38 -0.02 2.00 16 22 H 0.06 1.18 8.11 -2.39 -0.02 1.16 16 23 H 0.11 2.50 7.80 -2.39 -0.02 2.49 16 24 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 25 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.08 1.90 8.10 -2.39 -0.02 1.88 16 27 H 0.38 11.01 9.12 -74.05 -0.68 10.34 16 28 H 0.26 16.23 8.31 -92.71 -0.77 15.45 16 29 H 0.03 1.32 2.34 -2.39 -0.01 1.31 16 30 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -75.03 244.86 1.04 -73.99 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: 0.40 Total: 8.06 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: 3.92 Total: 1.67 kcal Atomic # 7 Polarization: -94.03 SS G_CDS: -1.57 Total: -95.61 kcal Atomic # 8 Polarization: -35.16 SS G_CDS: -3.41 Total: -38.57 kcal Atomic # 14 Polarization: 48.76 SS G_CDS: 1.70 Total: 50.46 kcal Total: -75.03 1.04 -73.99 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306727343.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.995 kcal (2) G-P(sol) polarization free energy of solvation -75.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds