Wall clock time and date at job start Mon Mar 30 2020 02:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.36937 * 120.00144 * 2 1 4 4 H 1.07999 * 119.99853 * 157.65271 * 3 2 1 5 5 C 1.38809 * 120.00011 * 337.65562 * 3 2 1 6 6 N 1.31624 * 120.00088 * 330.31939 * 5 3 2 7 7 Si 1.86800 * 119.99962 * 150.31410 * 5 3 2 8 8 H 1.48503 * 109.47406 * 270.00383 * 7 5 3 9 9 H 1.48508 * 109.47056 * 150.00169 * 7 5 3 10 10 H 1.48500 * 109.46895 * 30.00358 * 7 5 3 11 11 C 1.46496 * 119.99953 * 180.02562 * 2 1 3 12 12 C 1.53002 * 109.47192 * 269.99611 * 11 2 1 13 13 H 1.08999 * 108.82343 * 56.47097 * 12 11 2 14 14 C 1.52330 * 108.86805 * 174.99711 * 12 11 2 15 15 C 1.54264 * 112.58454 * 120.82057 * 14 12 11 16 16 S 1.83955 * 102.57936 * 24.53040 * 15 14 12 17 17 C 1.54255 * 108.86564 * 298.07830 * 12 11 2 18 18 H 1.09008 * 109.47560 * 92.72756 * 1 2 3 19 19 H 1.09005 * 109.47551 * 212.72702 * 1 2 3 20 20 H 1.09001 * 109.47410 * 332.72873 * 1 2 3 21 21 H 0.96999 * 120.00035 * 354.34741 * 6 5 3 22 22 H 1.09003 * 109.47243 * 30.00218 * 11 2 1 23 23 H 1.09005 * 109.47535 * 149.99441 * 11 2 1 24 24 H 1.08997 * 108.87131 * 241.63638 * 14 12 11 25 25 H 1.09001 * 108.87367 * 0.02562 * 14 12 11 26 26 H 1.09001 * 110.78442 * 142.80108 * 15 14 12 27 27 H 1.09003 * 110.79113 * 266.25458 * 15 14 12 28 28 H 1.08993 * 110.79249 * 332.92146 * 17 12 11 29 29 H 1.08998 * 110.78699 * 96.37810 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1688 1.2210 0.3556 5 6 1.5338 2.3429 -0.4570 6 7 0.6022 2.2704 -1.3840 7 14 2.0271 4.0028 0.2437 8 1 1.1795 4.3142 1.4226 9 1 1.8409 5.0519 -0.7909 10 1 3.4531 3.9618 0.6562 11 6 2.1974 -1.2687 -0.0006 12 6 2.4525 -1.7110 1.4417 13 1 1.4977 -1.7774 1.9633 14 6 3.1026 -3.0885 1.4269 15 6 4.4832 -3.0995 2.1152 16 16 4.3689 -1.6682 3.2651 17 6 3.3271 -0.6504 2.1414 18 1 -0.3634 -0.0489 -1.0265 19 1 -0.3634 -0.8645 0.5556 20 1 -0.3634 0.9134 0.4709 21 1 0.4033 1.4202 -1.8064 22 1 1.6083 -2.0281 -0.5148 23 1 3.1498 -1.1382 -0.5144 24 1 2.4477 -3.7930 1.9395 25 1 3.2222 -3.4108 0.3925 26 1 4.6331 -4.0277 2.6665 27 1 5.2798 -2.9479 1.3868 28 1 3.9444 -0.1190 1.4172 29 1 2.7105 0.0455 2.7102 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307015225.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:18 Heat of formation + Delta-G solvation = 10.283078 kcal Electronic energy + Delta-G solvation = -11508.574250 eV Core-core repulsion = 9558.134487 eV Total energy + Delta-G solvation = -1950.439763 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 201.088 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -37.34416 -34.69112 -31.18316 -29.16954 -26.40950 -26.01113 -23.69176 -20.98699 -19.28265 -17.45808 -16.23423 -15.36534 -14.47401 -13.93188 -13.79118 -13.49105 -13.22232 -12.59781 -12.21682 -11.54744 -11.48712 -11.27305 -10.84514 -10.68079 -10.64504 -10.45714 -10.15320 -10.02454 -9.60678 -9.36969 -8.34010 -7.44313 -6.95972 -6.08181 -3.21000 2.23386 2.69790 3.51632 3.52465 3.68895 4.58518 4.83384 4.99274 5.10659 5.38846 5.43600 5.53629 5.61257 5.79536 5.93466 6.06208 6.21159 6.32243 6.36158 6.48313 6.59254 6.76335 6.93377 7.08488 7.96378 8.55166 9.09257 9.83793 10.22922 11.18564 Molecular weight = 201.09amu Principal moments of inertia in cm(-1) A = 0.043808 B = 0.010858 C = 0.009191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.999118 B = 2578.010006 C = 3045.889878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.135 3.865 2 N -0.605 5.605 3 C -0.360 4.360 4 H 0.063 0.937 5 C -0.020 4.020 6 N -0.911 5.911 7 Si 1.058 2.942 8 H -0.293 1.293 9 H -0.290 1.290 10 H -0.291 1.291 11 C 0.158 3.842 12 C -0.115 4.115 13 H 0.072 0.928 14 C -0.118 4.118 15 C -0.058 4.058 16 S -0.352 6.352 17 C -0.018 4.018 18 H 0.009 0.991 19 H 0.013 0.987 20 H 0.052 0.948 21 H 0.270 0.730 22 H 0.036 0.964 23 H 0.050 0.950 24 H 0.067 0.933 25 H 0.072 0.928 26 H 0.095 0.905 27 H 0.084 0.916 28 H 0.095 0.905 29 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.102 -9.092 4.848 11.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.011 4.011 2 N -0.328 5.328 3 C -0.489 4.489 4 H 0.081 0.919 5 C -0.223 4.223 6 N -0.551 5.551 7 Si 0.888 3.112 8 H -0.220 1.220 9 H -0.217 1.217 10 H -0.218 1.218 11 C 0.030 3.970 12 C -0.139 4.139 13 H 0.091 0.909 14 C -0.158 4.158 15 C -0.206 4.206 16 S -0.126 6.126 17 C -0.165 4.165 18 H 0.027 0.973 19 H 0.032 0.968 20 H 0.071 0.929 21 H 0.081 0.919 22 H 0.054 0.946 23 H 0.068 0.932 24 H 0.086 0.914 25 H 0.090 0.910 26 H 0.114 0.886 27 H 0.103 0.897 28 H 0.113 0.887 29 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 4.219 -7.235 5.934 10.264 hybrid contribution -0.100 -1.815 -1.025 2.087 sum 4.119 -9.049 4.909 11.088 Atomic orbital electron populations 1.20956 0.84021 0.98553 0.97527 1.43971 1.00973 1.01426 1.86419 1.20000 1.00026 0.86699 1.42151 0.91905 1.25717 0.98831 1.01785 0.95985 1.70759 1.35240 1.28685 1.20388 0.83616 0.75306 0.76156 0.76077 1.22044 1.21688 1.21765 1.20918 0.96197 0.88345 0.91564 1.22362 0.98998 0.91392 1.01107 0.90948 1.22035 0.94450 0.98185 1.01094 1.24038 1.00235 0.97733 0.98592 1.87805 1.71896 1.21030 1.31829 1.24275 0.97324 0.97898 0.97049 0.97259 0.96812 0.92944 0.91871 0.94558 0.93194 0.91442 0.90963 0.88614 0.89739 0.88674 0.87963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 3.15 8.97 59.84 0.54 3.69 15 2 N -0.60 -14.54 2.70 -181.12 -0.49 -15.03 15 3 C -0.36 -9.62 8.59 -15.06 -0.13 -9.75 15 4 H 0.06 1.67 6.15 -52.49 -0.32 1.35 15 5 C -0.02 -0.56 4.61 -17.43 -0.08 -0.64 15 6 N -0.91 -27.04 12.69 55.49 0.70 -26.34 15 7 Si 1.06 25.13 30.01 -169.99 -5.10 20.03 15 8 H -0.29 -6.83 7.11 56.52 0.40 -6.43 15 9 H -0.29 -7.00 7.11 56.52 0.40 -6.60 15 10 H -0.29 -6.59 7.11 56.52 0.40 -6.19 15 11 C 0.16 3.11 4.67 -4.04 -0.02 3.09 15 12 C -0.12 -1.97 2.87 -90.30 -0.26 -2.22 15 13 H 0.07 1.29 8.14 -51.93 -0.42 0.87 15 14 C -0.12 -1.60 5.98 -26.41 -0.16 -1.76 15 15 C -0.06 -0.76 7.46 37.82 0.28 -0.48 15 16 S -0.35 -5.86 23.27 -107.50 -2.50 -8.36 15 17 C -0.02 -0.33 5.74 37.81 0.22 -0.12 15 18 H 0.01 0.23 6.85 -51.92 -0.36 -0.13 15 19 H 0.01 0.27 8.09 -51.93 -0.42 -0.15 15 20 H 0.05 1.33 7.21 -51.93 -0.37 0.96 15 21 H 0.27 8.06 6.32 -40.82 -0.26 7.80 15 22 H 0.04 0.67 8.07 -51.93 -0.42 0.25 15 23 H 0.05 1.01 7.99 -51.93 -0.42 0.59 15 24 H 0.07 0.84 8.14 -51.93 -0.42 0.42 15 25 H 0.07 0.91 7.51 -51.93 -0.39 0.52 15 26 H 0.10 1.07 8.14 -51.93 -0.42 0.65 15 27 H 0.08 1.05 8.14 -51.93 -0.42 0.63 15 28 H 0.09 1.89 6.14 -51.93 -0.32 1.58 15 29 H 0.10 2.02 8.14 -51.93 -0.42 1.60 15 LS Contribution 243.92 15.07 3.68 3.68 Total: -1.00 -29.01 243.92 -7.50 -36.52 By element: Atomic # 1 Polarization: 1.88 SS G_CDS: -4.18 Total: -2.30 kcal Atomic # 6 Polarization: -8.58 SS G_CDS: 0.39 Total: -8.19 kcal Atomic # 7 Polarization: -41.59 SS G_CDS: 0.21 Total: -41.37 kcal Atomic # 14 Polarization: 25.13 SS G_CDS: -5.10 Total: 20.03 kcal Atomic # 16 Polarization: -5.86 SS G_CDS: -2.50 Total: -8.36 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -29.01 -7.50 -36.52 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307015225.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.799 kcal (2) G-P(sol) polarization free energy of solvation -29.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds