Wall clock time and date at job start Mon Mar 30 2020 02:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.36937 * 120.00144 * 2 1 4 4 H 1.07999 * 119.99853 * 157.65271 * 3 2 1 5 5 C 1.38809 * 120.00011 * 337.65562 * 3 2 1 6 6 N 1.31624 * 120.00088 * 330.31939 * 5 3 2 7 7 Si 1.86800 * 119.99962 * 150.31410 * 5 3 2 8 8 H 1.48503 * 109.47406 * 270.00383 * 7 5 3 9 9 H 1.48508 * 109.47056 * 150.00169 * 7 5 3 10 10 H 1.48500 * 109.46895 * 30.00358 * 7 5 3 11 11 C 1.46496 * 119.99953 * 180.02562 * 2 1 3 12 12 C 1.53002 * 109.47192 * 269.99611 * 11 2 1 13 13 H 1.08999 * 108.82343 * 56.47097 * 12 11 2 14 14 C 1.52330 * 108.86805 * 174.99711 * 12 11 2 15 15 C 1.54264 * 112.58454 * 120.82057 * 14 12 11 16 16 S 1.83955 * 102.57936 * 24.53040 * 15 14 12 17 17 C 1.54255 * 108.86564 * 298.07830 * 12 11 2 18 18 H 1.09008 * 109.47560 * 92.72756 * 1 2 3 19 19 H 1.09005 * 109.47551 * 212.72702 * 1 2 3 20 20 H 1.09001 * 109.47410 * 332.72873 * 1 2 3 21 21 H 0.96999 * 120.00035 * 354.34741 * 6 5 3 22 22 H 1.09003 * 109.47243 * 30.00218 * 11 2 1 23 23 H 1.09005 * 109.47535 * 149.99441 * 11 2 1 24 24 H 1.08997 * 108.87131 * 241.63638 * 14 12 11 25 25 H 1.09001 * 108.87367 * 0.02562 * 14 12 11 26 26 H 1.09001 * 110.78442 * 142.80108 * 15 14 12 27 27 H 1.09003 * 110.79113 * 266.25458 * 15 14 12 28 28 H 1.08993 * 110.79249 * 332.92146 * 17 12 11 29 29 H 1.08998 * 110.78699 * 96.37810 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1688 1.2210 0.3556 5 6 1.5338 2.3429 -0.4570 6 7 0.6022 2.2704 -1.3840 7 14 2.0271 4.0028 0.2437 8 1 1.1795 4.3142 1.4226 9 1 1.8409 5.0519 -0.7909 10 1 3.4531 3.9618 0.6562 11 6 2.1974 -1.2687 -0.0006 12 6 2.4525 -1.7110 1.4417 13 1 1.4977 -1.7774 1.9633 14 6 3.1026 -3.0885 1.4269 15 6 4.4832 -3.0995 2.1152 16 16 4.3689 -1.6682 3.2651 17 6 3.3271 -0.6504 2.1414 18 1 -0.3634 -0.0489 -1.0265 19 1 -0.3634 -0.8645 0.5556 20 1 -0.3634 0.9134 0.4709 21 1 0.4033 1.4202 -1.8064 22 1 1.6083 -2.0281 -0.5148 23 1 3.1498 -1.1382 -0.5144 24 1 2.4477 -3.7930 1.9395 25 1 3.2222 -3.4108 0.3925 26 1 4.6331 -4.0277 2.6665 27 1 5.2798 -2.9479 1.3868 28 1 3.9444 -0.1190 1.4172 29 1 2.7105 0.0455 2.7102 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307015225.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:18 Heat of formation + Delta-G solvation = -6.188773 kcal Electronic energy + Delta-G solvation = -11509.288523 eV Core-core repulsion = 9558.134487 eV Total energy + Delta-G solvation = -1951.154036 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 201.088 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.92503 -36.37121 -33.03175 -30.59839 -28.03378 -27.93139 -25.18009 -22.76937 -20.65796 -19.45672 -17.56652 -16.80033 -16.18522 -15.67778 -15.33540 -15.30167 -14.68953 -14.16435 -13.72589 -13.12897 -12.89121 -12.75969 -12.59886 -12.49575 -12.21405 -12.03990 -11.90219 -11.56075 -11.45409 -10.78178 -10.40774 -8.97434 -8.75434 -8.21797 -5.32523 0.98946 1.40015 1.58406 1.63755 1.80981 2.65817 3.19833 3.53734 3.64461 3.86952 4.08675 4.20388 4.36142 4.55267 4.61361 4.65331 4.75025 4.77284 4.86713 4.93069 5.10474 5.15119 5.25134 5.35533 5.88418 6.41625 7.06641 7.80821 8.20015 9.02618 Molecular weight = 201.09amu Principal moments of inertia in cm(-1) A = 0.043808 B = 0.010858 C = 0.009191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.999118 B = 2578.010006 C = 3045.889878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.145 3.855 2 N -0.621 5.621 3 C -0.350 4.350 4 H 0.061 0.939 5 C -0.075 4.075 6 N -0.943 5.943 7 Si 1.103 2.897 8 H -0.288 1.288 9 H -0.296 1.296 10 H -0.274 1.274 11 C 0.157 3.843 12 C -0.103 4.103 13 H 0.066 0.934 14 C -0.114 4.114 15 C -0.044 4.044 16 S -0.375 6.375 17 C -0.017 4.017 18 H -0.004 1.004 19 H 0.047 0.953 20 H 0.023 0.977 21 H 0.256 0.744 22 H 0.055 0.945 23 H 0.042 0.958 24 H 0.087 0.913 25 H 0.089 0.911 26 H 0.125 0.875 27 H 0.095 0.905 28 H 0.074 0.926 29 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.002 -10.852 5.607 13.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.000 4.000 2 N -0.345 5.345 3 C -0.480 4.480 4 H 0.079 0.921 5 C -0.272 4.272 6 N -0.586 5.586 7 Si 0.929 3.071 8 H -0.215 1.215 9 H -0.223 1.223 10 H -0.199 1.199 11 C 0.030 3.970 12 C -0.127 4.127 13 H 0.084 0.916 14 C -0.153 4.153 15 C -0.192 4.192 16 S -0.149 6.149 17 C -0.164 4.164 18 H 0.014 0.986 19 H 0.065 0.935 20 H 0.042 0.958 21 H 0.067 0.933 22 H 0.073 0.927 23 H 0.061 0.939 24 H 0.106 0.894 25 H 0.108 0.892 26 H 0.143 0.857 27 H 0.113 0.887 28 H 0.092 0.908 29 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 5.144 -9.035 6.713 12.375 hybrid contribution -0.324 -1.390 -1.240 1.891 sum 4.820 -10.425 5.473 12.723 Atomic orbital electron populations 1.20796 0.83862 0.98515 0.96855 1.44206 1.01404 1.02337 1.86538 1.20213 0.99955 0.87850 1.39950 0.92129 1.26869 0.99154 1.04983 0.96214 1.70876 1.37405 1.27887 1.22412 0.82996 0.76020 0.72721 0.75345 1.21459 1.22314 1.19907 1.21099 0.95554 0.86876 0.93440 1.22227 0.98951 0.92994 0.98478 0.91559 1.21973 0.94809 0.95888 1.02649 1.24217 1.00282 0.96810 0.97888 1.87893 1.71427 1.22849 1.32688 1.24020 0.97280 0.98264 0.96874 0.98640 0.93454 0.95814 0.93326 0.92678 0.93935 0.89434 0.89207 0.85690 0.88675 0.90785 0.90199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.15 6.79 8.97 127.77 1.15 7.93 15 2 N -0.62 -29.70 2.70 -726.94 -1.96 -31.66 15 3 C -0.35 -18.80 8.59 84.03 0.72 -18.07 15 4 H 0.06 3.24 6.15 -2.91 -0.02 3.22 15 5 C -0.08 -4.23 4.61 84.86 0.39 -3.84 15 6 N -0.94 -57.18 12.69 21.65 0.27 -56.90 15 7 Si 1.10 51.28 30.01 68.60 2.06 53.34 15 8 H -0.29 -12.99 7.11 99.48 0.71 -12.29 15 9 H -0.30 -13.98 7.11 99.48 0.71 -13.27 15 10 H -0.27 -11.80 7.11 99.48 0.71 -11.09 15 11 C 0.16 5.92 4.67 86.38 0.40 6.33 15 12 C -0.10 -3.31 2.87 -10.59 -0.03 -3.34 15 13 H 0.07 2.22 8.14 -2.39 -0.02 2.20 15 14 C -0.11 -2.63 5.98 30.80 0.18 -2.45 15 15 C -0.04 -0.99 7.46 72.41 0.54 -0.45 15 16 S -0.37 -11.73 23.27 -56.49 -1.31 -13.05 15 17 C -0.02 -0.60 5.74 72.41 0.42 -0.18 15 18 H 0.00 -0.22 6.85 -2.38 -0.02 -0.24 15 19 H 0.05 1.85 8.09 -2.38 -0.02 1.83 15 20 H 0.02 1.21 7.21 -2.39 -0.02 1.19 15 21 H 0.26 15.74 6.32 -92.71 -0.59 15.15 15 22 H 0.05 1.87 8.07 -2.39 -0.02 1.86 15 23 H 0.04 1.66 7.99 -2.38 -0.02 1.64 15 24 H 0.09 1.75 8.14 -2.39 -0.02 1.73 15 25 H 0.09 1.83 7.51 -2.39 -0.02 1.82 15 26 H 0.12 2.14 8.14 -2.39 -0.02 2.12 15 27 H 0.09 1.97 8.14 -2.39 -0.02 1.95 15 28 H 0.07 2.94 6.14 -2.39 -0.01 2.93 15 29 H 0.08 3.18 8.14 -2.39 -0.02 3.16 15 Total: -1.00 -62.57 243.92 4.13 -58.44 By element: Atomic # 1 Polarization: 2.62 SS G_CDS: 1.30 Total: 3.91 kcal Atomic # 6 Polarization: -17.85 SS G_CDS: 3.77 Total: -14.07 kcal Atomic # 7 Polarization: -86.88 SS G_CDS: -1.69 Total: -88.57 kcal Atomic # 14 Polarization: 51.28 SS G_CDS: 2.06 Total: 53.34 kcal Atomic # 16 Polarization: -11.73 SS G_CDS: -1.31 Total: -13.05 kcal Total: -62.57 4.13 -58.44 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307015225.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.253 kcal (2) G-P(sol) polarization free energy of solvation -62.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds