Wall clock time and date at job start Mon Mar 30 2020 02:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42899 * 114.00009 * 2 1 4 4 H 1.09002 * 110.64545 * 29.29884 * 3 2 1 5 5 C 1.54941 * 110.72192 * 266.14677 * 3 2 1 6 6 N 1.48534 * 103.22715 * 204.04898 * 5 3 2 7 7 C 1.46895 * 111.00086 * 159.72265 * 6 5 3 8 8 C 1.50700 * 109.47198 * 170.00041 * 7 6 5 9 9 H 1.08005 * 119.99889 * 359.97438 * 8 7 6 10 10 C 1.37881 * 120.00137 * 179.97438 * 8 7 6 11 11 N 1.31510 * 119.99616 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 120.00005 * 180.02562 * 10 8 7 13 13 H 1.48494 * 109.47047 * 90.00280 * 12 10 8 14 14 H 1.48500 * 109.46954 * 210.00303 * 12 10 8 15 15 H 1.48506 * 109.47210 * 329.99988 * 12 10 8 16 16 C 1.47898 * 105.81836 * 39.20648 * 6 5 3 17 17 C 1.53996 * 107.06161 * 334.67184 * 16 6 5 18 18 H 1.08995 * 110.31067 * 120.13968 * 17 16 6 19 19 O 1.42902 * 110.30895 * 242.30947 * 17 16 6 20 20 H 1.09000 * 109.46820 * 299.99569 * 1 2 3 21 21 H 1.08998 * 109.47184 * 59.99985 * 1 2 3 22 22 H 1.09009 * 109.47258 * 180.02562 * 1 2 3 23 23 H 1.08991 * 110.66662 * 322.48649 * 5 3 2 24 24 H 1.09006 * 110.66426 * 85.45268 * 5 3 2 25 25 H 1.08997 * 109.47213 * 289.99815 * 7 6 5 26 26 H 1.08997 * 109.47041 * 50.00139 * 7 6 5 27 27 H 0.97003 * 119.99751 * 179.97438 * 11 10 8 28 28 H 1.09002 * 109.91780 * 94.02159 * 16 6 5 29 29 H 1.09005 * 109.92166 * 215.12098 * 16 6 5 30 30 H 0.96707 * 113.99532 * 295.71612 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3539 2.0183 0.4992 5 6 2.3222 1.7667 -1.4459 6 7 3.4013 2.7697 -1.2573 7 6 4.1563 2.9709 -2.5012 8 6 5.0716 4.1581 -2.3469 9 1 5.0903 4.7084 -1.4177 10 6 5.8853 4.5418 -3.3918 11 7 5.8621 3.8720 -4.5233 12 14 7.0203 6.0129 -3.2003 13 1 8.3321 5.5604 -2.6716 14 1 7.2163 6.6622 -4.5213 15 1 6.4148 6.9857 -2.2556 16 6 4.2717 2.2297 -0.1904 17 6 3.4054 1.2873 0.6656 18 1 3.8176 0.2784 0.6527 19 8 3.3212 1.7727 2.0071 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 2.6755 0.9302 -2.0487 24 1 1.4439 2.2239 -1.9017 25 1 4.7484 2.0811 -2.7149 26 1 3.4624 3.1514 -3.3222 27 1 6.4343 4.1421 -5.2586 28 1 5.0993 1.6745 -0.6319 29 1 4.6565 3.0445 0.4229 30 1 4.1675 1.7842 2.4749 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307270851.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:00 Heat of formation + Delta-G solvation = -87.573719 kcal Electronic energy + Delta-G solvation = -13292.464557 eV Core-core repulsion = 10895.028534 eV Total energy + Delta-G solvation = -2397.436023 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 201.115 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.16711 -36.71220 -35.52230 -32.73868 -29.90793 -27.72834 -26.85364 -25.54595 -22.55325 -20.67301 -20.27431 -17.36117 -16.29279 -16.15376 -15.66402 -14.84362 -14.57783 -14.35418 -13.71921 -13.13888 -12.76951 -12.58456 -11.90191 -11.80160 -11.71263 -11.29325 -11.04971 -10.71495 -10.55344 -10.21878 -10.06392 -9.74463 -9.41620 -9.15739 -8.45886 -7.44440 -6.05105 -4.06906 3.30711 3.36885 3.41783 3.70250 4.40137 4.51027 4.92583 5.08742 5.22638 5.31292 5.35278 5.40757 5.46775 5.65871 5.70464 5.88782 6.17786 6.22161 6.32172 6.50570 7.02418 7.22917 7.33649 7.73456 7.83356 7.95092 8.10121 8.44936 9.00856 9.57613 11.05879 Molecular weight = 201.12amu Principal moments of inertia in cm(-1) A = 0.056210 B = 0.008123 C = 0.007374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.013288 B = 3446.224449 C = 3796.450657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.385 6.385 3 C 0.090 3.910 4 H 0.083 0.917 5 C 0.017 3.983 6 N -0.507 5.507 7 C 0.184 3.816 8 C -0.508 4.508 9 H 0.063 0.937 10 C 0.055 3.945 11 N -0.899 5.899 12 Si 0.900 3.100 13 H -0.281 1.281 14 H -0.286 1.286 15 H -0.272 1.272 16 C 0.022 3.978 17 C 0.094 3.906 18 H 0.067 0.933 19 O -0.563 6.563 20 H 0.041 0.959 21 H 0.043 0.957 22 H 0.082 0.918 23 H 0.048 0.952 24 H 0.079 0.921 25 H -0.004 1.004 26 H 0.032 0.968 27 H 0.262 0.738 28 H 0.051 0.949 29 H 0.083 0.917 30 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.270 -5.960 8.630 12.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.303 6.303 3 C 0.032 3.968 4 H 0.101 0.899 5 C -0.112 4.112 6 N -0.233 5.233 7 C 0.058 3.942 8 C -0.546 4.546 9 H 0.081 0.919 10 C -0.147 4.147 11 N -0.539 5.539 12 Si 0.727 3.273 13 H -0.207 1.207 14 H -0.212 1.212 15 H -0.197 1.197 16 C -0.106 4.106 17 C 0.034 3.966 18 H 0.085 0.915 19 O -0.369 6.369 20 H 0.059 0.941 21 H 0.061 0.939 22 H 0.101 0.899 23 H 0.066 0.934 24 H 0.097 0.903 25 H 0.014 0.986 26 H 0.050 0.950 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.101 0.899 30 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -6.921 -5.565 8.421 12.239 hybrid contribution 1.431 0.143 -0.270 1.463 sum -5.490 -5.422 8.152 11.225 Atomic orbital electron populations 1.22753 0.81103 1.02331 1.00114 1.87843 1.19740 1.27770 1.94971 1.23000 0.94030 0.84180 0.95575 0.89859 1.23555 0.97477 0.95221 0.94961 1.64847 1.10643 1.38129 1.09702 1.19951 0.92321 0.96359 0.85546 1.21129 1.20925 1.12767 0.99812 0.91851 1.25004 0.97342 0.97176 0.95148 1.69960 1.39766 1.40354 1.03789 0.86467 0.80777 0.82597 0.77413 1.20718 1.21216 1.19724 1.23403 0.95252 0.97104 0.94879 1.22751 0.95193 0.96511 0.82130 0.91480 1.86469 1.36394 1.88271 1.25758 0.94065 0.93877 0.89917 0.93363 0.90294 0.98617 0.94997 0.92870 0.93108 0.89897 0.77482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.86 101.05 1.10 1.50 16 2 O -0.39 -6.14 10.45 -35.23 -0.37 -6.51 16 3 C 0.09 1.54 3.27 -24.87 -0.08 1.46 16 4 H 0.08 1.41 7.79 -51.93 -0.40 1.01 16 5 C 0.02 0.32 6.24 -1.90 -0.01 0.31 16 6 N -0.51 -11.35 5.23 -231.90 -1.21 -12.56 16 7 C 0.18 4.86 4.55 -4.98 -0.02 4.84 16 8 C -0.51 -14.44 8.90 -34.44 -0.31 -14.75 16 9 H 0.06 1.79 7.81 -52.48 -0.41 1.38 16 10 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 11 N -0.90 -26.84 13.29 55.43 0.74 -26.10 16 12 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 16 13 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 14 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 15 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 16 C 0.02 0.44 6.07 -2.76 -0.02 0.42 16 17 C 0.09 1.57 4.12 -25.37 -0.10 1.46 16 18 H 0.07 1.07 8.08 -51.93 -0.42 0.65 16 19 O -0.56 -8.65 13.25 -35.23 -0.47 -9.12 16 20 H 0.04 0.45 8.11 -51.93 -0.42 0.03 16 21 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 22 H 0.08 0.80 8.14 -51.92 -0.42 0.38 16 23 H 0.05 0.94 8.02 -51.93 -0.42 0.53 16 24 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 25 H 0.00 -0.11 7.73 -51.93 -0.40 -0.51 16 26 H 0.03 0.90 8.08 -51.93 -0.42 0.48 16 27 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 28 H 0.05 1.03 7.52 -51.93 -0.39 0.64 16 29 H 0.08 1.62 7.97 -51.93 -0.41 1.20 16 30 H 0.38 4.04 9.12 45.56 0.42 4.45 16 LS Contribution 255.54 15.07 3.85 3.85 Total: -1.00 -31.81 255.54 -5.71 -37.52 By element: Atomic # 1 Polarization: 3.22 SS G_CDS: -3.68 Total: -0.47 kcal Atomic # 6 Polarization: -3.76 SS G_CDS: 0.46 Total: -3.30 kcal Atomic # 7 Polarization: -38.19 SS G_CDS: -0.48 Total: -38.67 kcal Atomic # 8 Polarization: -14.79 SS G_CDS: -0.84 Total: -15.62 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -31.81 -5.71 -37.52 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307270851.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.054 kcal (2) G-P(sol) polarization free energy of solvation -31.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds