Wall clock time and date at job start Mon Mar 30 2020 02:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42899 * 114.00009 * 2 1 4 4 H 1.09002 * 110.64545 * 29.29884 * 3 2 1 5 5 C 1.54941 * 110.72192 * 266.14677 * 3 2 1 6 6 N 1.48534 * 103.22715 * 204.04898 * 5 3 2 7 7 C 1.46895 * 111.00086 * 159.72265 * 6 5 3 8 8 C 1.50700 * 109.47198 * 170.00041 * 7 6 5 9 9 H 1.08005 * 119.99889 * 359.97438 * 8 7 6 10 10 C 1.37881 * 120.00137 * 179.97438 * 8 7 6 11 11 N 1.31510 * 119.99616 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 120.00005 * 180.02562 * 10 8 7 13 13 H 1.48494 * 109.47047 * 90.00280 * 12 10 8 14 14 H 1.48500 * 109.46954 * 210.00303 * 12 10 8 15 15 H 1.48506 * 109.47210 * 329.99988 * 12 10 8 16 16 C 1.47898 * 105.81836 * 39.20648 * 6 5 3 17 17 C 1.53996 * 107.06161 * 334.67184 * 16 6 5 18 18 H 1.08995 * 110.31067 * 120.13968 * 17 16 6 19 19 O 1.42902 * 110.30895 * 242.30947 * 17 16 6 20 20 H 1.09000 * 109.46820 * 299.99569 * 1 2 3 21 21 H 1.08998 * 109.47184 * 59.99985 * 1 2 3 22 22 H 1.09009 * 109.47258 * 180.02562 * 1 2 3 23 23 H 1.08991 * 110.66662 * 322.48649 * 5 3 2 24 24 H 1.09006 * 110.66426 * 85.45268 * 5 3 2 25 25 H 1.08997 * 109.47213 * 289.99815 * 7 6 5 26 26 H 1.08997 * 109.47041 * 50.00139 * 7 6 5 27 27 H 0.97003 * 119.99751 * 179.97438 * 11 10 8 28 28 H 1.09002 * 109.91780 * 94.02159 * 16 6 5 29 29 H 1.09005 * 109.92166 * 215.12098 * 16 6 5 30 30 H 0.96707 * 113.99532 * 295.71612 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3539 2.0183 0.4992 5 6 2.3222 1.7667 -1.4459 6 7 3.4013 2.7697 -1.2573 7 6 4.1563 2.9709 -2.5012 8 6 5.0716 4.1581 -2.3469 9 1 5.0903 4.7084 -1.4177 10 6 5.8853 4.5418 -3.3918 11 7 5.8621 3.8720 -4.5233 12 14 7.0203 6.0129 -3.2003 13 1 8.3321 5.5604 -2.6716 14 1 7.2163 6.6622 -4.5213 15 1 6.4148 6.9857 -2.2556 16 6 4.2717 2.2297 -0.1904 17 6 3.4054 1.2873 0.6656 18 1 3.8176 0.2784 0.6527 19 8 3.3212 1.7727 2.0071 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 2.6755 0.9302 -2.0487 24 1 1.4439 2.2239 -1.9017 25 1 4.7484 2.0811 -2.7149 26 1 3.4624 3.1514 -3.3222 27 1 6.4343 4.1421 -5.2586 28 1 5.0993 1.6745 -0.6319 29 1 4.6565 3.0445 0.4229 30 1 4.1675 1.7842 2.4749 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307270851.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:00 Heat of formation + Delta-G solvation = -114.272470 kcal Electronic energy + Delta-G solvation = -13293.622302 eV Core-core repulsion = 10895.028534 eV Total energy + Delta-G solvation = -2398.593768 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 201.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.59478 -38.00227 -36.99040 -34.82787 -31.59074 -29.22979 -28.42850 -26.98804 -24.43242 -22.21502 -21.84466 -18.73498 -18.33284 -17.59600 -17.02527 -16.47242 -16.02047 -15.83665 -15.17710 -14.74480 -14.41778 -14.19774 -13.70569 -13.32955 -13.14675 -12.86476 -12.64321 -12.45079 -12.30446 -12.04001 -11.59071 -11.37508 -11.07665 -10.64220 -10.60793 -9.26259 -8.23681 -6.34772 1.40735 1.42456 1.54448 2.37686 2.51064 3.08562 3.17666 3.44788 3.57338 3.84908 4.02292 4.23419 4.45021 4.51295 4.55905 4.65745 4.77275 4.79653 4.83736 4.90008 5.05517 5.14349 5.59498 5.91707 6.10220 6.18950 6.40942 6.79990 6.82460 7.35403 8.87708 Molecular weight = 201.12amu Principal moments of inertia in cm(-1) A = 0.056210 B = 0.008123 C = 0.007374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.013288 B = 3446.224449 C = 3796.450657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.398 6.398 3 C 0.101 3.899 4 H 0.087 0.913 5 C 0.015 3.985 6 N -0.520 5.520 7 C 0.199 3.801 8 C -0.527 4.527 9 H 0.062 0.938 10 C 0.002 3.998 11 N -0.934 5.934 12 Si 0.973 3.027 13 H -0.271 1.271 14 H -0.281 1.281 15 H -0.265 1.265 16 C 0.022 3.978 17 C 0.106 3.894 18 H 0.080 0.920 19 O -0.567 6.567 20 H 0.052 0.948 21 H 0.048 0.952 22 H 0.106 0.894 23 H 0.039 0.961 24 H 0.086 0.914 25 H -0.030 1.030 26 H 0.005 0.995 27 H 0.266 0.734 28 H 0.037 0.963 29 H 0.082 0.918 30 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.414 -5.709 9.970 13.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.316 6.316 3 C 0.042 3.958 4 H 0.105 0.895 5 C -0.113 4.113 6 N -0.246 5.246 7 C 0.073 3.927 8 C -0.565 4.565 9 H 0.080 0.920 10 C -0.197 4.197 11 N -0.575 5.575 12 Si 0.797 3.203 13 H -0.196 1.196 14 H -0.206 1.206 15 H -0.189 1.189 16 C -0.106 4.106 17 C 0.046 3.954 18 H 0.098 0.902 19 O -0.376 6.376 20 H 0.071 0.929 21 H 0.066 0.934 22 H 0.124 0.876 23 H 0.057 0.943 24 H 0.105 0.895 25 H -0.013 1.013 26 H 0.024 0.976 27 H 0.075 0.925 28 H 0.056 0.944 29 H 0.100 0.900 30 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -7.073 -5.326 9.794 13.202 hybrid contribution 1.410 0.009 -0.667 1.560 sum -5.662 -5.316 9.127 11.984 Atomic orbital electron populations 1.23040 0.78931 1.04244 1.00940 1.87826 1.22113 1.26753 1.94923 1.22778 0.94401 0.84980 0.93630 0.89465 1.23612 0.96537 0.94249 0.96921 1.64711 1.11253 1.40261 1.08356 1.19594 0.91474 0.94853 0.86781 1.21420 1.21691 1.13438 0.99969 0.91982 1.25952 0.98875 1.00217 0.94613 1.70084 1.40675 1.42069 1.04645 0.85324 0.78640 0.78666 0.77641 1.19589 1.20618 1.18940 1.23433 0.95196 0.97595 0.94411 1.22520 0.94419 0.96106 0.82317 0.90247 1.86430 1.38254 1.88114 1.24759 0.92929 0.93359 0.87554 0.94282 0.89545 1.01256 0.97643 0.92537 0.94422 0.89952 0.75045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.51 10.86 113.37 1.23 1.75 16 2 O -0.40 -11.87 10.45 -148.98 -1.56 -13.43 16 3 C 0.10 3.27 3.27 31.80 0.10 3.37 16 4 H 0.09 2.77 7.79 -2.39 -0.02 2.75 16 5 C 0.02 0.59 6.24 86.65 0.54 1.13 16 6 N -0.52 -23.52 5.23 -887.58 -4.65 -28.16 16 7 C 0.20 10.92 4.55 85.56 0.39 11.31 16 8 C -0.53 -30.40 8.90 25.60 0.23 -30.17 16 9 H 0.06 3.52 7.81 -2.91 -0.02 3.49 16 10 C 0.00 0.09 5.46 84.66 0.46 0.55 16 11 N -0.93 -56.59 13.29 21.45 0.28 -56.30 16 12 Si 0.97 44.37 29.54 68.60 2.03 46.39 16 13 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 14 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 15 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 16 C 0.02 0.87 6.07 86.45 0.52 1.39 16 17 C 0.11 3.38 4.12 31.47 0.13 3.51 16 18 H 0.08 2.37 8.08 -2.39 -0.02 2.35 16 19 O -0.57 -15.96 13.25 -148.98 -1.97 -17.94 16 20 H 0.05 1.01 8.11 -2.39 -0.02 0.99 16 21 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 22 H 0.11 1.75 8.14 -2.38 -0.02 1.73 16 23 H 0.04 1.55 8.02 -2.39 -0.02 1.53 16 24 H 0.09 3.09 8.14 -2.38 -0.02 3.07 16 25 H -0.03 -1.77 7.73 -2.39 -0.02 -1.79 16 26 H 0.01 0.32 8.08 -2.39 -0.02 0.30 16 27 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 28 H 0.04 1.55 7.52 -2.39 -0.02 1.53 16 29 H 0.08 3.17 7.97 -2.38 -0.02 3.15 16 30 H 0.40 7.43 9.12 -74.05 -0.68 6.76 16 Total: -1.00 -67.53 255.54 -1.81 -69.35 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: 0.44 Total: 7.25 kcal Atomic # 6 Polarization: -10.77 SS G_CDS: 3.61 Total: -7.16 kcal Atomic # 7 Polarization: -80.11 SS G_CDS: -4.36 Total: -84.47 kcal Atomic # 8 Polarization: -27.83 SS G_CDS: -3.53 Total: -31.36 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.39 kcal Total: -67.53 -1.81 -69.35 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307270851.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.926 kcal (2) G-P(sol) polarization free energy of solvation -67.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds