Wall clock time and date at job start Mon Mar 30 2020 02:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50703 * 115.55207 * 2 1 4 4 O 1.21279 * 120.00669 * 214.33607 * 3 2 1 5 5 N 1.34777 * 119.99386 * 34.33069 * 3 2 1 6 6 C 1.46501 * 119.99822 * 180.02562 * 5 3 2 7 7 C 1.50705 * 109.47367 * 180.02562 * 6 5 3 8 8 H 1.08003 * 119.99564 * 0.02562 * 7 6 5 9 9 C 1.37875 * 120.00126 * 179.97438 * 7 6 5 10 10 N 1.31510 * 119.99890 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 119.99982 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47244 * 59.99911 * 11 9 7 13 13 H 1.48497 * 109.47201 * 180.02562 * 11 9 7 14 14 H 1.48506 * 109.46702 * 299.99632 * 11 9 7 15 15 C 1.53069 * 117.51819 * 145.72584 * 2 1 3 16 16 C 1.52995 * 59.98632 * 107.47623 * 15 2 1 17 17 H 1.08998 * 117.49906 * 107.50648 * 16 15 2 18 18 F 1.39905 * 117.50066 * 252.50021 * 16 15 2 19 19 H 1.09004 * 109.47106 * 205.66676 * 1 2 3 20 20 H 1.08995 * 109.47092 * 325.66681 * 1 2 3 21 21 H 1.09001 * 109.47171 * 85.67024 * 1 2 3 22 22 H 0.97002 * 120.00474 * 0.02562 * 5 3 2 23 23 H 1.09007 * 109.46968 * 300.00018 * 6 5 3 24 24 H 1.08997 * 109.47365 * 59.99783 * 6 5 3 25 25 H 0.97001 * 119.99907 * 179.97438 * 10 9 7 26 26 H 1.09007 * 117.51170 * 359.97438 * 15 2 1 27 27 H 1.08997 * 117.49718 * 214.96789 * 15 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1800 1.3596 0.0000 4 8 3.2240 1.5328 -0.5924 5 7 1.6010 2.3833 0.6583 6 6 2.2325 3.7052 0.6579 7 6 1.3909 4.6643 1.4599 8 1 0.4773 4.3231 1.9238 9 6 1.7880 5.9769 1.6021 10 7 2.9013 6.3919 1.0384 11 14 0.7452 7.1655 2.5968 12 1 0.6283 6.6728 3.9927 13 1 1.3853 8.5055 2.5963 14 1 -0.6073 7.2634 1.9914 15 6 2.2372 -1.1218 0.7645 16 6 2.2364 -1.1207 -0.7655 17 1 3.1713 -0.8746 -1.2690 18 9 1.4339 -2.0670 -1.4118 19 1 -0.3633 -0.9263 0.4451 20 1 -0.3633 0.8486 0.5796 21 1 -0.3633 0.0776 -1.0247 22 1 0.7661 2.2448 1.1324 23 1 3.2251 3.6338 1.1028 24 1 2.3188 4.0663 -0.3669 25 1 3.1804 7.3155 1.1382 26 1 1.6124 -1.8597 1.2679 27 1 3.1724 -0.8760 1.2676 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307278487.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:54 Heat of formation + Delta-G solvation = -73.145966 kcal Electronic energy + Delta-G solvation = -12657.190631 eV Core-core repulsion = 10136.919937 eV Total energy + Delta-G solvation = -2520.270694 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 201.091 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -47.60662 -39.40349 -36.02627 -34.29344 -32.39062 -28.84272 -27.19638 -23.67822 -22.46519 -21.55328 -19.13256 -17.56018 -16.31289 -15.76696 -15.14515 -14.88553 -14.64467 -14.42936 -13.95570 -13.22831 -12.80638 -12.41277 -12.32911 -12.08200 -11.84795 -11.72139 -11.03927 -10.90193 -10.34869 -10.28994 -9.83921 -9.45112 -9.12292 -8.77325 -7.95905 -6.19675 -4.27119 2.91277 3.23612 3.28440 3.29819 3.70848 3.78023 4.24393 4.35124 4.52965 4.87294 5.06811 5.16522 5.26245 5.57785 5.68015 5.73967 5.81184 6.09442 6.20364 7.24444 7.34583 7.46110 7.61317 7.92686 8.54726 8.71802 9.00051 9.39445 10.90487 Molecular weight = 201.09amu Principal moments of inertia in cm(-1) A = 0.072592 B = 0.007080 C = 0.006700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 385.622952 B = 3953.983343 C = 4178.132085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.172 4.172 3 C 0.535 3.465 4 O -0.555 6.555 5 N -0.702 5.702 6 C 0.249 3.751 7 C -0.545 4.545 8 H 0.063 0.937 9 C 0.065 3.935 10 N -0.885 5.885 11 Si 0.905 3.095 12 H -0.275 1.275 13 H -0.285 1.285 14 H -0.275 1.275 15 C -0.162 4.162 16 C 0.046 3.954 17 H 0.145 0.855 18 F -0.183 7.183 19 H 0.065 0.935 20 H 0.071 0.929 21 H 0.068 0.932 22 H 0.392 0.608 23 H 0.028 0.972 24 H 0.029 0.971 25 H 0.267 0.733 26 H 0.112 0.888 27 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.490 -12.108 0.329 12.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.176 4.176 3 C 0.319 3.681 4 O -0.435 6.435 5 N -0.350 5.350 6 C 0.128 3.872 7 C -0.583 4.583 8 H 0.081 0.919 9 C -0.139 4.139 10 N -0.523 5.523 11 Si 0.732 3.268 12 H -0.200 1.200 13 H -0.210 1.210 14 H -0.200 1.200 15 C -0.200 4.200 16 C 0.010 3.990 17 H 0.162 0.838 18 F -0.163 7.163 19 H 0.084 0.916 20 H 0.090 0.910 21 H 0.087 0.913 22 H 0.226 0.774 23 H 0.046 0.954 24 H 0.047 0.953 25 H 0.077 0.923 26 H 0.130 0.870 27 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -3.644 -11.779 -0.127 12.330 hybrid contribution -1.004 0.630 0.733 1.394 sum -4.648 -11.149 0.606 12.094 Atomic orbital electron populations 1.21293 0.90001 1.02773 1.03055 1.22354 0.97064 0.91363 1.06833 1.19154 0.84763 0.84365 0.79787 1.90661 1.23646 1.83993 1.45164 1.46424 1.26293 1.11468 1.50825 1.19166 0.93828 0.76380 0.97807 1.21172 1.08670 0.94782 1.33725 0.91912 1.24945 0.95213 0.98131 0.95636 1.69961 1.21908 1.17305 1.43079 0.86459 0.80191 0.79813 0.80362 1.20034 1.21041 1.20027 1.23791 1.03375 0.98940 0.93849 1.22168 0.95034 0.89895 0.91895 0.83752 1.92776 1.75651 1.65269 1.82623 0.91584 0.91035 0.91325 0.77409 0.95381 0.95340 0.92331 0.87011 0.86740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.43 9.43 37.16 0.35 -1.08 15 2 C -0.17 -2.58 2.62 -155.62 -0.41 -2.99 15 3 C 0.54 10.75 7.39 -10.98 -0.08 10.66 15 4 O -0.55 -13.21 16.26 5.56 0.09 -13.12 15 5 N -0.70 -14.80 5.45 -61.47 -0.33 -15.13 15 6 C 0.25 6.55 5.43 -5.19 -0.03 6.52 15 7 C -0.55 -14.67 9.28 -34.44 -0.32 -14.99 15 8 H 0.06 1.57 7.60 -52.48 -0.40 1.17 15 9 C 0.06 1.78 5.46 -17.82 -0.10 1.68 15 10 N -0.89 -25.89 13.29 55.43 0.74 -25.16 15 11 Si 0.90 20.66 29.54 -169.99 -5.02 15.64 15 12 H -0.27 -6.14 7.11 56.52 0.40 -5.74 15 13 H -0.28 -6.48 7.11 56.52 0.40 -6.08 15 14 H -0.27 -6.14 7.11 56.52 0.40 -5.74 15 15 C -0.16 -2.00 9.87 -26.70 -0.26 -2.26 15 16 C 0.05 0.65 7.35 -26.73 -0.20 0.45 15 17 H 0.15 2.05 7.67 -51.93 -0.40 1.66 15 18 F -0.18 -2.58 17.14 2.25 0.04 -2.54 15 19 H 0.07 0.70 7.90 -51.93 -0.41 0.29 15 20 H 0.07 0.86 6.38 -51.93 -0.33 0.53 15 21 H 0.07 0.86 8.14 -51.93 -0.42 0.44 15 22 H 0.39 7.13 6.62 -40.82 -0.27 6.86 15 23 H 0.03 0.81 8.14 -51.92 -0.42 0.39 15 24 H 0.03 0.83 8.14 -51.93 -0.42 0.41 15 25 H 0.27 7.33 8.31 -40.82 -0.34 6.99 15 26 H 0.11 1.12 8.05 -51.93 -0.42 0.71 15 27 H 0.11 1.40 8.14 -51.93 -0.42 0.98 15 LS Contribution 244.91 15.07 3.69 3.69 Total: -1.00 -30.86 244.91 -4.89 -35.76 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -3.05 Total: 2.86 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: -1.04 Total: -2.00 kcal Atomic # 7 Polarization: -40.69 SS G_CDS: 0.40 Total: -40.29 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: 0.09 Total: -13.12 kcal Atomic # 9 Polarization: -2.58 SS G_CDS: 0.04 Total: -2.54 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -30.86 -4.89 -35.76 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307278487.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.386 kcal (2) G-P(sol) polarization free energy of solvation -30.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds