Wall clock time and date at job start Mon Mar 30 2020 02:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50703 * 115.55207 * 2 1 4 4 O 1.21279 * 120.00669 * 214.33607 * 3 2 1 5 5 N 1.34777 * 119.99386 * 34.33069 * 3 2 1 6 6 C 1.46501 * 119.99822 * 180.02562 * 5 3 2 7 7 C 1.50705 * 109.47367 * 180.02562 * 6 5 3 8 8 H 1.08003 * 119.99564 * 0.02562 * 7 6 5 9 9 C 1.37875 * 120.00126 * 179.97438 * 7 6 5 10 10 N 1.31510 * 119.99890 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 119.99982 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47244 * 59.99911 * 11 9 7 13 13 H 1.48497 * 109.47201 * 180.02562 * 11 9 7 14 14 H 1.48506 * 109.46702 * 299.99632 * 11 9 7 15 15 C 1.53069 * 117.51819 * 145.72584 * 2 1 3 16 16 C 1.52995 * 59.98632 * 107.47623 * 15 2 1 17 17 H 1.08998 * 117.49906 * 107.50648 * 16 15 2 18 18 F 1.39905 * 117.50066 * 252.50021 * 16 15 2 19 19 H 1.09004 * 109.47106 * 205.66676 * 1 2 3 20 20 H 1.08995 * 109.47092 * 325.66681 * 1 2 3 21 21 H 1.09001 * 109.47171 * 85.67024 * 1 2 3 22 22 H 0.97002 * 120.00474 * 0.02562 * 5 3 2 23 23 H 1.09007 * 109.46968 * 300.00018 * 6 5 3 24 24 H 1.08997 * 109.47365 * 59.99783 * 6 5 3 25 25 H 0.97001 * 119.99907 * 179.97438 * 10 9 7 26 26 H 1.09007 * 117.51170 * 359.97438 * 15 2 1 27 27 H 1.08997 * 117.49718 * 214.96789 * 15 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1800 1.3596 0.0000 4 8 3.2240 1.5328 -0.5924 5 7 1.6010 2.3833 0.6583 6 6 2.2325 3.7052 0.6579 7 6 1.3909 4.6643 1.4599 8 1 0.4773 4.3231 1.9238 9 6 1.7880 5.9769 1.6021 10 7 2.9013 6.3919 1.0384 11 14 0.7452 7.1655 2.5968 12 1 0.6283 6.6728 3.9927 13 1 1.3853 8.5055 2.5963 14 1 -0.6073 7.2634 1.9914 15 6 2.2372 -1.1218 0.7645 16 6 2.2364 -1.1207 -0.7655 17 1 3.1713 -0.8746 -1.2690 18 9 1.4339 -2.0670 -1.4118 19 1 -0.3633 -0.9263 0.4451 20 1 -0.3633 0.8486 0.5796 21 1 -0.3633 0.0776 -1.0247 22 1 0.7661 2.2448 1.1324 23 1 3.2251 3.6338 1.1028 24 1 2.3188 4.0663 -0.3669 25 1 3.1804 7.3155 1.1382 26 1 1.6124 -1.8597 1.2679 27 1 3.1724 -0.8760 1.2676 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307278487.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:54 Heat of formation + Delta-G solvation = -94.567177 kcal Electronic energy + Delta-G solvation = -12658.119524 eV Core-core repulsion = 10136.919937 eV Total energy + Delta-G solvation = -2521.199587 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 201.091 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -48.71129 -40.97483 -37.36202 -36.21001 -34.39992 -30.17988 -28.94226 -25.48121 -23.63833 -23.18727 -20.76992 -18.97539 -18.05012 -17.31959 -16.69653 -16.51180 -16.16221 -15.87376 -15.36163 -14.70679 -14.25834 -14.05620 -13.64011 -13.55054 -13.24160 -13.01057 -12.94509 -12.68513 -12.23764 -11.54483 -11.44267 -10.96692 -10.80892 -10.73341 -9.90194 -8.30123 -6.47175 1.43433 1.44569 1.47794 1.55715 2.20195 2.42840 2.54083 3.04821 3.05843 3.42589 3.69734 3.86358 4.01946 4.59404 4.68578 4.74883 4.80584 5.07178 5.08300 5.20291 5.20617 5.43718 5.63276 5.81989 6.62326 6.80725 7.20575 7.38075 8.81856 Molecular weight = 201.09amu Principal moments of inertia in cm(-1) A = 0.072592 B = 0.007080 C = 0.006700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 385.622952 B = 3953.983343 C = 4178.132085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.183 4.183 3 C 0.532 3.468 4 O -0.600 6.600 5 N -0.697 5.697 6 C 0.264 3.736 7 C -0.558 4.558 8 H 0.084 0.916 9 C 0.006 3.994 10 N -0.930 5.930 11 Si 0.985 3.015 12 H -0.261 1.261 13 H -0.286 1.286 14 H -0.262 1.262 15 C -0.132 4.132 16 C 0.043 3.957 17 H 0.135 0.865 18 F -0.181 7.181 19 H 0.094 0.906 20 H 0.074 0.926 21 H 0.064 0.936 22 H 0.409 0.591 23 H -0.009 1.009 24 H -0.011 1.011 25 H 0.269 0.731 26 H 0.148 0.852 27 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.516 -13.152 1.775 14.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.187 4.187 3 C 0.319 3.681 4 O -0.482 6.482 5 N -0.347 5.347 6 C 0.142 3.858 7 C -0.596 4.596 8 H 0.102 0.898 9 C -0.194 4.194 10 N -0.569 5.569 11 Si 0.808 3.192 12 H -0.186 1.186 13 H -0.211 1.211 14 H -0.187 1.187 15 C -0.170 4.170 16 C 0.007 3.993 17 H 0.153 0.847 18 F -0.161 7.161 19 H 0.113 0.887 20 H 0.092 0.908 21 H 0.083 0.917 22 H 0.246 0.754 23 H 0.009 0.991 24 H 0.007 0.993 25 H 0.078 0.922 26 H 0.165 0.835 27 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -5.707 -12.867 1.329 14.139 hybrid contribution -0.311 0.900 0.224 0.978 sum -6.018 -11.968 1.552 13.485 Atomic orbital electron populations 1.21345 0.87731 1.04448 1.03297 1.22251 0.98518 0.88425 1.09525 1.20039 0.84078 0.85968 0.78050 1.90635 1.25828 1.85080 1.46677 1.46151 1.26880 1.10032 1.51603 1.18618 0.92862 0.79142 0.95185 1.21567 1.09277 0.95120 1.33619 0.89793 1.26053 0.96412 1.00312 0.96647 1.70125 1.24078 1.17923 1.44756 0.85202 0.78363 0.76684 0.78948 1.18570 1.21123 1.18674 1.23968 1.03309 0.97121 0.92579 1.22112 0.94403 0.89494 0.93295 0.84724 1.92784 1.75570 1.64959 1.82788 0.88699 0.90759 0.91667 0.75442 0.99077 0.99289 0.92186 0.83454 0.86709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.46 9.43 71.98 0.68 -1.79 15 2 C -0.18 -5.18 2.62 -52.90 -0.14 -5.32 15 3 C 0.53 21.51 7.39 87.66 0.65 22.16 15 4 O -0.60 -29.62 16.26 -3.03 -0.05 -29.67 15 5 N -0.70 -29.63 5.45 -466.77 -2.54 -32.17 15 6 C 0.26 14.48 5.43 85.63 0.46 14.95 15 7 C -0.56 -30.11 9.28 25.60 0.24 -29.87 15 8 H 0.08 4.07 7.60 -2.91 -0.02 4.05 15 9 C 0.01 0.31 5.46 84.65 0.46 0.77 15 10 N -0.93 -55.76 13.29 21.45 0.28 -55.47 15 11 Si 0.99 41.80 29.54 68.60 2.03 43.82 15 12 H -0.26 -10.46 7.11 99.48 0.71 -9.75 15 13 H -0.29 -12.06 7.11 99.48 0.71 -11.36 15 14 H -0.26 -10.54 7.11 99.48 0.71 -9.83 15 15 C -0.13 -2.86 9.87 30.62 0.30 -2.56 15 16 C 0.04 1.14 7.35 30.59 0.22 1.36 15 17 H 0.14 3.81 7.67 -2.39 -0.02 3.79 15 18 F -0.18 -4.66 17.14 44.97 0.77 -3.89 15 19 H 0.09 1.58 7.90 -2.38 -0.02 1.56 15 20 H 0.07 1.59 6.38 -2.39 -0.02 1.58 15 21 H 0.06 1.49 8.14 -2.39 -0.02 1.47 15 22 H 0.41 14.42 6.62 -92.71 -0.61 13.81 15 23 H -0.01 -0.53 8.14 -2.38 -0.02 -0.55 15 24 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 15 25 H 0.27 15.09 8.31 -92.71 -0.77 14.32 15 26 H 0.15 2.20 8.05 -2.38 -0.02 2.18 15 27 H 0.11 2.54 8.14 -2.39 -0.02 2.52 15 Total: -1.00 -68.52 244.91 3.94 -64.58 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: 0.57 Total: 13.09 kcal Atomic # 6 Polarization: -3.17 SS G_CDS: 2.88 Total: -0.29 kcal Atomic # 7 Polarization: -85.38 SS G_CDS: -2.26 Total: -87.64 kcal Atomic # 8 Polarization: -29.62 SS G_CDS: -0.05 Total: -29.67 kcal Atomic # 9 Polarization: -4.66 SS G_CDS: 0.77 Total: -3.89 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.82 kcal Total: -68.52 3.94 -64.58 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307278487.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.982 kcal (2) G-P(sol) polarization free energy of solvation -68.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds