Wall clock time and date at job start Mon Mar 30 2020 02:47:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47339 * 2 1 4 4 C 1.50697 * 109.47299 * 120.00150 * 2 1 3 5 5 H 1.07991 * 120.00449 * 119.72229 * 4 2 1 6 6 C 1.37885 * 119.99686 * 300.00060 * 4 2 1 7 7 N 1.31514 * 120.00035 * 179.72339 * 6 4 2 8 8 Si 1.86803 * 119.99853 * 359.72191 * 6 4 2 9 9 H 1.48500 * 109.46986 * 90.00256 * 8 6 4 10 10 H 1.48496 * 109.47029 * 210.00273 * 8 6 4 11 11 H 1.48499 * 109.47352 * 330.00102 * 8 6 4 12 12 N 1.46904 * 109.47141 * 239.99987 * 2 1 3 13 13 C 1.46908 * 111.00046 * 85.00248 * 12 2 1 14 14 H 1.08995 * 110.45147 * 36.14780 * 13 12 2 15 15 C 1.54478 * 110.50872 * 273.54694 * 13 12 2 16 16 O 1.44420 * 104.80432 * 217.37757 * 15 13 12 17 17 C 1.44433 * 105.27447 * 40.50999 * 16 15 13 18 18 C 1.54482 * 104.80273 * 319.49337 * 17 16 15 19 19 H 1.08994 * 110.50962 * 142.62346 * 18 17 16 20 20 O 1.42901 * 110.50590 * 265.33141 * 18 17 16 21 21 H 1.08997 * 109.47084 * 300.00697 * 1 2 3 22 22 H 1.09007 * 109.46899 * 60.00345 * 1 2 3 23 23 H 1.08993 * 109.47037 * 179.97438 * 1 2 3 24 24 H 0.97000 * 119.99706 * 179.97438 * 7 6 4 25 25 H 1.00903 * 111.00169 * 208.94998 * 12 2 1 26 26 H 1.09007 * 110.37323 * 336.20818 * 15 13 12 27 27 H 1.08992 * 110.37421 * 98.43056 * 15 13 12 28 28 H 1.08997 * 110.37196 * 78.31967 * 17 16 15 29 29 H 1.09000 * 110.37272 * 200.54678 * 17 16 15 30 30 H 0.96701 * 114.00201 * 294.64264 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6495 -1.5910 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 2.1331 -0.8624 3.5565 8 14 0.6317 1.2840 2.6541 9 1 -0.7979 0.8843 2.6967 10 1 0.9840 1.9968 3.9082 11 1 0.8602 2.1818 1.4935 12 7 2.0197 -0.6925 -1.1995 13 6 2.0825 0.2226 -2.3470 14 1 2.3837 1.2189 -2.0235 15 6 0.7189 0.2777 -3.0707 16 8 1.0491 0.3718 -4.4734 17 6 2.1635 -0.5271 -4.6632 18 6 3.0548 -0.3190 -3.4186 19 1 3.4888 -1.2657 -3.0971 20 8 4.0813 0.6367 -3.6922 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8990 -0.5308 4.4375 25 1 2.9174 -1.1205 -1.0288 26 1 0.1486 -0.6306 -2.8752 27 1 0.1553 1.1545 -2.7521 28 1 1.8149 -1.5587 -4.7119 29 1 2.7094 -0.2685 -5.5705 30 1 4.7200 0.3481 -4.3585 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307407953.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:50 Heat of formation + Delta-G solvation = -84.319295 kcal Electronic energy + Delta-G solvation = -13532.929216 eV Core-core repulsion = 11135.634315 eV Total energy + Delta-G solvation = -2397.294901 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 201.115 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.59339 -35.96271 -35.86734 -32.56908 -30.47070 -28.45530 -27.43462 -24.90022 -22.70543 -20.64854 -20.05866 -17.23966 -16.93444 -16.03080 -15.88640 -15.36084 -14.84067 -13.78203 -13.59015 -13.35264 -12.86367 -12.71839 -12.32119 -11.96196 -11.53467 -11.20371 -11.06236 -10.67878 -10.45278 -10.16994 -10.09036 -9.57251 -9.43431 -9.08308 -8.65140 -7.73018 -6.14269 -4.14789 3.24457 3.34624 3.36640 4.06209 4.12140 4.34999 4.65113 4.92015 5.03937 5.18281 5.26153 5.51999 5.65587 5.73074 5.76709 6.06960 6.20353 6.30647 6.48511 6.62262 6.75090 6.86591 7.31428 7.48180 7.64181 7.81835 8.18999 8.52639 8.88905 9.47369 10.98540 Molecular weight = 201.12amu Principal moments of inertia in cm(-1) A = 0.053302 B = 0.009523 C = 0.008850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.181597 B = 2939.589992 C = 3163.222254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.181 3.819 3 H 0.005 0.995 4 C -0.522 4.522 5 H 0.079 0.921 6 C 0.072 3.928 7 N -0.897 5.897 8 Si 0.891 3.109 9 H -0.277 1.277 10 H -0.297 1.297 11 H -0.268 1.268 12 N -0.666 5.666 13 C 0.058 3.942 14 H 0.065 0.935 15 C 0.056 3.944 16 O -0.378 6.378 17 C 0.022 3.978 18 C 0.067 3.933 19 H 0.079 0.921 20 O -0.558 6.558 21 H 0.038 0.962 22 H 0.028 0.972 23 H 0.059 0.941 24 H 0.265 0.735 25 H 0.344 0.656 26 H 0.076 0.924 27 H 0.089 0.911 28 H 0.067 0.933 29 H 0.089 0.911 30 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.240 1.225 -13.508 13.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.072 3.928 3 H 0.022 0.978 4 C -0.560 4.560 5 H 0.097 0.903 6 C -0.130 4.130 7 N -0.535 5.535 8 Si 0.721 3.279 9 H -0.204 1.204 10 H -0.224 1.224 11 H -0.193 1.193 12 N -0.300 5.300 13 C -0.053 4.053 14 H 0.083 0.917 15 C -0.021 4.021 16 O -0.297 6.297 17 C -0.056 4.056 18 C 0.008 3.992 19 H 0.097 0.903 20 O -0.363 6.363 21 H 0.057 0.943 22 H 0.047 0.953 23 H 0.078 0.922 24 H 0.075 0.925 25 H 0.164 0.836 26 H 0.094 0.906 27 H 0.108 0.892 28 H 0.085 0.915 29 H 0.107 0.893 30 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -0.807 1.449 -13.181 13.285 hybrid contribution 0.547 0.808 0.273 1.013 sum -0.261 2.257 -12.907 13.106 Atomic orbital electron populations 1.22167 0.98562 1.01183 0.98031 1.19636 0.91901 0.93095 0.88155 0.97787 1.21061 1.32689 1.13737 0.88538 0.90308 1.24927 0.95644 0.96732 0.95718 1.69886 1.45485 1.40122 0.97963 0.86803 0.80627 0.83557 0.76917 1.20403 1.22420 1.19328 1.60681 1.33059 1.31466 1.04812 1.22881 0.93260 0.97074 0.92096 0.91720 1.23646 0.96280 1.02672 0.79516 1.89091 1.50157 1.64184 1.26242 1.24039 0.88593 0.94566 0.98408 1.23376 0.88740 0.92129 0.95005 0.90342 1.86599 1.41175 1.44998 1.63525 0.94312 0.95288 0.92199 0.92498 0.83591 0.90619 0.89246 0.91463 0.89256 0.77814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 8.70 37.16 0.32 -2.79 16 2 C 0.18 4.26 2.19 -68.86 -0.15 4.11 16 3 H 0.00 0.11 6.52 -51.93 -0.34 -0.22 16 4 C -0.52 -14.47 9.17 -34.44 -0.32 -14.79 16 5 H 0.08 2.34 7.86 -52.49 -0.41 1.93 16 6 C 0.07 2.07 5.45 -17.82 -0.10 1.98 16 7 N -0.90 -27.18 13.96 55.43 0.77 -26.41 16 8 Si 0.89 22.02 24.38 -169.99 -4.15 17.88 16 9 H -0.28 -6.66 6.86 56.52 0.39 -6.28 16 10 H -0.30 -7.33 7.11 56.52 0.40 -6.93 16 11 H -0.27 -6.43 6.53 56.52 0.37 -6.06 16 12 N -0.67 -13.31 6.12 -99.31 -0.61 -13.92 16 13 C 0.06 1.02 3.23 -66.14 -0.21 0.81 16 14 H 0.06 1.28 7.37 -51.93 -0.38 0.90 16 15 C 0.06 0.92 5.72 37.93 0.22 1.14 16 16 O -0.38 -6.09 11.65 -35.23 -0.41 -6.50 16 17 C 0.02 0.28 7.38 37.94 0.28 0.56 16 18 C 0.07 0.95 4.16 -25.16 -0.10 0.85 16 19 H 0.08 1.03 7.62 -51.93 -0.40 0.63 16 20 O -0.56 -7.79 13.30 -35.23 -0.47 -8.26 16 21 H 0.04 0.88 3.29 -51.93 -0.17 0.71 16 22 H 0.03 0.55 5.88 -51.92 -0.31 0.24 16 23 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 24 H 0.27 7.54 8.31 -40.82 -0.34 7.21 16 25 H 0.34 6.85 7.67 -39.29 -0.30 6.55 16 26 H 0.08 1.24 8.06 -51.93 -0.42 0.82 16 27 H 0.09 1.44 7.39 -51.93 -0.38 1.05 16 28 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.09 0.93 8.09 -51.93 -0.42 0.51 16 30 H 0.37 3.17 9.12 45.56 0.42 3.59 16 LS Contribution 239.37 15.07 3.61 3.61 Total: -1.00 -31.41 239.37 -4.45 -35.87 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -3.14 Total: 5.88 kcal Atomic # 6 Polarization: -8.08 SS G_CDS: -0.06 Total: -8.14 kcal Atomic # 7 Polarization: -40.50 SS G_CDS: 0.17 Total: -40.33 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: -0.88 Total: -14.76 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.15 Total: 17.88 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -31.41 -4.45 -35.87 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307407953.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.454 kcal (2) G-P(sol) polarization free energy of solvation -31.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds