Wall clock time and date at job start Mon Mar 30 2020 02:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46897 * 110.99798 * 2 1 4 4 C 1.50702 * 109.47114 * 66.05216 * 3 2 1 5 5 H 1.07997 * 119.99659 * 359.97438 * 4 3 2 6 6 C 1.37878 * 120.00346 * 179.97438 * 4 3 2 7 7 N 1.31517 * 119.99779 * 359.97438 * 6 4 3 8 8 Si 1.86796 * 120.00323 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.47404 * 89.99833 * 8 6 4 10 10 H 1.48504 * 109.46852 * 209.99845 * 8 6 4 11 11 H 1.48500 * 109.46871 * 329.99750 * 8 6 4 12 12 C 1.46900 * 110.99759 * 236.04763 * 2 1 3 13 13 H 1.09001 * 110.45473 * 76.08662 * 12 2 1 14 14 C 1.54472 * 110.51328 * 313.48282 * 12 2 1 15 15 O 1.44426 * 104.80512 * 217.37581 * 14 12 2 16 16 C 1.44420 * 105.27063 * 40.51121 * 15 14 12 17 17 C 1.54471 * 104.90294 * 319.43209 * 16 15 14 18 18 H 1.08996 * 110.51222 * 265.38845 * 17 16 15 19 19 O 1.42903 * 110.51230 * 142.67945 * 17 16 15 20 20 H 1.08998 * 109.47668 * 189.94808 * 1 2 3 21 21 H 1.08999 * 109.47093 * 309.95364 * 1 2 3 22 22 H 1.09004 * 109.47365 * 69.94724 * 1 2 3 23 23 H 1.09002 * 109.46630 * 186.04257 * 3 2 1 24 24 H 1.09000 * 109.47729 * 306.04429 * 3 2 1 25 25 H 0.96996 * 120.00215 * 180.02562 * 7 6 4 26 26 H 1.09002 * 110.37378 * 98.54383 * 14 12 2 27 27 H 1.09000 * 110.47119 * 336.25714 * 14 12 2 28 28 H 1.09003 * 110.37291 * 78.32676 * 16 15 14 29 29 H 1.08999 * 110.36943 * 200.54260 * 16 15 14 30 30 H 0.96705 * 113.99777 * 61.45609 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6370 2.0471 1.2985 5 1 1.0741 1.5113 2.0485 6 6 2.0277 3.3491 1.5291 7 7 2.7136 4.0012 0.6159 8 14 1.5828 4.1868 3.1383 9 1 2.6588 3.9497 4.1339 10 1 1.4314 5.6465 2.9111 11 1 0.3044 3.6301 3.6492 12 6 1.9954 -0.7660 -1.1376 13 1 1.9026 -0.1914 -2.0593 14 6 1.2599 -2.1182 -1.2665 15 8 2.2805 -3.0563 -1.6715 16 6 3.4480 -2.7064 -0.8967 17 6 3.4710 -1.1618 -0.8886 18 1 4.1085 -0.7851 -1.6884 19 8 3.9152 -0.6743 0.3792 20 1 -0.3634 -1.0122 0.1775 21 1 -0.3633 0.6599 0.7878 22 1 -0.3634 0.3524 -0.9654 23 1 3.0797 1.3443 -0.1082 24 1 1.5611 1.9274 -0.8309 25 1 2.9888 4.9171 0.7782 26 1 0.4798 -2.0551 -2.0252 27 1 0.8328 -2.4127 -0.3078 28 1 3.3579 -3.0900 0.1196 29 1 4.3487 -3.0968 -1.3703 30 1 4.8134 -0.9465 0.6124 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307574121.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:18 Heat of formation + Delta-G solvation = -76.480842 kcal Electronic energy + Delta-G solvation = -13683.201304 eV Core-core repulsion = 11286.246304 eV Total energy + Delta-G solvation = -2396.955000 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 201.115 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.51443 -35.98270 -35.39065 -32.46788 -29.49829 -28.35810 -26.80888 -24.96136 -22.17227 -21.52041 -19.43387 -17.25466 -16.55990 -15.90900 -15.24092 -14.76724 -14.65976 -13.88965 -13.71806 -12.97250 -12.82347 -12.22456 -11.90102 -11.82404 -11.38366 -11.11378 -10.85998 -10.50528 -10.37283 -10.19358 -9.84290 -9.69443 -9.32684 -9.06929 -8.33379 -7.14642 -5.94134 -3.93131 3.36713 3.42070 3.45816 4.02921 4.48809 4.75241 4.89155 4.94781 5.04225 5.38197 5.41704 5.53339 5.67150 5.88935 5.95339 5.99553 6.11998 6.20540 6.35641 6.77131 6.88314 7.39639 7.45968 7.87096 8.10248 8.28734 8.33505 8.65386 9.13458 9.69073 11.17230 Molecular weight = 201.12amu Principal moments of inertia in cm(-1) A = 0.055931 B = 0.009494 C = 0.008858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.499917 B = 2948.479143 C = 3160.318017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.511 5.511 3 C 0.197 3.803 4 C -0.496 4.496 5 H 0.061 0.939 6 C 0.053 3.947 7 N -0.902 5.902 8 Si 0.897 3.103 9 H -0.281 1.281 10 H -0.289 1.289 11 H -0.275 1.275 12 C 0.054 3.946 13 H 0.051 0.949 14 C 0.049 3.951 15 O -0.379 6.379 16 C 0.016 3.984 17 C 0.082 3.918 18 H 0.061 0.939 19 O -0.511 6.511 20 H 0.046 0.954 21 H 0.079 0.921 22 H 0.008 0.992 23 H 0.046 0.954 24 H -0.018 1.018 25 H 0.259 0.741 26 H 0.087 0.913 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.087 0.913 30 H 0.360 0.640 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.534 -10.363 -3.144 10.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.237 5.237 3 C 0.073 3.927 4 C -0.534 4.534 5 H 0.079 0.921 6 C -0.148 4.148 7 N -0.542 5.542 8 Si 0.725 3.275 9 H -0.207 1.207 10 H -0.215 1.215 11 H -0.200 1.200 12 C -0.056 4.056 13 H 0.069 0.931 14 C -0.028 4.028 15 O -0.297 6.297 16 C -0.061 4.061 17 C 0.021 3.979 18 H 0.079 0.921 19 O -0.313 6.313 20 H 0.065 0.935 21 H 0.097 0.903 22 H 0.027 0.973 23 H 0.064 0.936 24 H -0.001 1.001 25 H 0.069 0.931 26 H 0.105 0.895 27 H 0.091 0.909 28 H 0.087 0.913 29 H 0.105 0.895 30 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 0.144 -10.319 -2.904 10.721 hybrid contribution 0.163 0.905 0.144 0.931 sum 0.307 -9.414 -2.760 9.815 Atomic orbital electron populations 1.22356 0.89367 1.00209 1.00162 1.62154 1.05880 1.18252 1.37428 1.19752 0.96384 0.80619 0.95983 1.21131 1.34058 0.96599 1.01659 0.92081 1.24964 0.95573 0.97391 0.96842 1.69965 1.38847 1.11375 1.34017 0.86522 0.78776 0.78345 0.83864 1.20733 1.21471 1.19980 1.23027 0.93022 0.95000 0.94521 0.93139 1.23635 0.91069 0.87464 1.00590 1.89058 1.22262 1.54939 1.63458 1.24223 0.89302 0.95857 0.96756 1.23105 0.95719 0.91717 0.87352 0.92118 1.87061 1.33929 1.75609 1.34696 0.93498 0.90253 0.97309 0.93634 1.00052 0.93143 0.89471 0.90898 0.91324 0.89513 0.79541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 8.83 60.07 0.53 1.08 16 2 N -0.51 -11.39 4.00 -234.26 -0.94 -12.33 16 3 C 0.20 5.30 4.22 -4.98 -0.02 5.28 16 4 C -0.50 -14.30 8.37 -34.44 -0.29 -14.58 16 5 H 0.06 1.75 7.18 -52.49 -0.38 1.38 16 6 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 7 N -0.90 -27.35 13.29 55.43 0.74 -26.62 16 8 Si 0.90 22.12 29.54 -169.99 -5.02 17.10 16 9 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 10 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 11 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 12 C 0.05 1.02 2.89 -66.00 -0.19 0.83 16 13 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 14 C 0.05 0.78 6.10 37.93 0.23 1.01 16 15 O -0.38 -6.04 11.65 -35.23 -0.41 -6.45 16 16 C 0.02 0.23 7.36 37.93 0.28 0.51 16 17 C 0.08 1.37 4.19 -25.01 -0.10 1.27 16 18 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 19 O -0.51 -9.56 10.73 -35.23 -0.38 -9.93 16 20 H 0.05 0.79 6.45 -51.93 -0.34 0.45 16 21 H 0.08 1.71 6.65 -51.93 -0.35 1.36 16 22 H 0.01 0.16 8.12 -51.93 -0.42 -0.26 16 23 H 0.05 1.31 6.40 -51.93 -0.33 0.98 16 24 H -0.02 -0.53 8.12 -51.93 -0.42 -0.95 16 25 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 26 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 27 H 0.07 1.17 6.84 -51.93 -0.36 0.82 16 28 H 0.07 0.96 8.08 -51.93 -0.42 0.54 16 29 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 30 H 0.36 4.78 9.11 45.56 0.42 5.20 16 LS Contribution 245.71 15.07 3.70 3.70 Total: -1.00 -32.61 245.71 -5.38 -37.99 By element: Atomic # 1 Polarization: 3.13 SS G_CDS: -3.41 Total: -0.28 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: 0.34 Total: -3.18 kcal Atomic # 7 Polarization: -38.75 SS G_CDS: -0.20 Total: -38.95 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: -0.79 Total: -16.39 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -32.61 -5.38 -37.99 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307574121.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.491 kcal (2) G-P(sol) polarization free energy of solvation -32.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds