Wall clock time and date at job start Mon Mar 30 2020 02:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46897 * 110.99798 * 2 1 4 4 C 1.50702 * 109.47114 * 66.05216 * 3 2 1 5 5 H 1.07997 * 119.99659 * 359.97438 * 4 3 2 6 6 C 1.37878 * 120.00346 * 179.97438 * 4 3 2 7 7 N 1.31517 * 119.99779 * 359.97438 * 6 4 3 8 8 Si 1.86796 * 120.00323 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.47404 * 89.99833 * 8 6 4 10 10 H 1.48504 * 109.46852 * 209.99845 * 8 6 4 11 11 H 1.48500 * 109.46871 * 329.99750 * 8 6 4 12 12 C 1.46900 * 110.99759 * 236.04763 * 2 1 3 13 13 H 1.09001 * 110.45473 * 76.08662 * 12 2 1 14 14 C 1.54472 * 110.51328 * 313.48282 * 12 2 1 15 15 O 1.44426 * 104.80512 * 217.37581 * 14 12 2 16 16 C 1.44420 * 105.27063 * 40.51121 * 15 14 12 17 17 C 1.54471 * 104.90294 * 319.43209 * 16 15 14 18 18 H 1.08996 * 110.51222 * 265.38845 * 17 16 15 19 19 O 1.42903 * 110.51230 * 142.67945 * 17 16 15 20 20 H 1.08998 * 109.47668 * 189.94808 * 1 2 3 21 21 H 1.08999 * 109.47093 * 309.95364 * 1 2 3 22 22 H 1.09004 * 109.47365 * 69.94724 * 1 2 3 23 23 H 1.09002 * 109.46630 * 186.04257 * 3 2 1 24 24 H 1.09000 * 109.47729 * 306.04429 * 3 2 1 25 25 H 0.96996 * 120.00215 * 180.02562 * 7 6 4 26 26 H 1.09002 * 110.37378 * 98.54383 * 14 12 2 27 27 H 1.09000 * 110.47119 * 336.25714 * 14 12 2 28 28 H 1.09003 * 110.37291 * 78.32676 * 16 15 14 29 29 H 1.08999 * 110.36943 * 200.54260 * 16 15 14 30 30 H 0.96705 * 113.99777 * 61.45609 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6370 2.0471 1.2985 5 1 1.0741 1.5113 2.0485 6 6 2.0277 3.3491 1.5291 7 7 2.7136 4.0012 0.6159 8 14 1.5828 4.1868 3.1383 9 1 2.6588 3.9497 4.1339 10 1 1.4314 5.6465 2.9111 11 1 0.3044 3.6301 3.6492 12 6 1.9954 -0.7660 -1.1376 13 1 1.9026 -0.1914 -2.0593 14 6 1.2599 -2.1182 -1.2665 15 8 2.2805 -3.0563 -1.6715 16 6 3.4480 -2.7064 -0.8967 17 6 3.4710 -1.1618 -0.8886 18 1 4.1085 -0.7851 -1.6884 19 8 3.9152 -0.6743 0.3792 20 1 -0.3634 -1.0122 0.1775 21 1 -0.3633 0.6599 0.7878 22 1 -0.3634 0.3524 -0.9654 23 1 3.0797 1.3443 -0.1082 24 1 1.5611 1.9274 -0.8309 25 1 2.9888 4.9171 0.7782 26 1 0.4798 -2.0551 -2.0252 27 1 0.8328 -2.4127 -0.3078 28 1 3.3579 -3.0900 0.1196 29 1 4.3487 -3.0968 -1.3703 30 1 4.8134 -0.9465 0.6124 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307574121.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:18 Heat of formation + Delta-G solvation = -103.369369 kcal Electronic energy + Delta-G solvation = -13684.367278 eV Core-core repulsion = 11286.246304 eV Total energy + Delta-G solvation = -2398.120974 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 201.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.85523 -37.56849 -36.85588 -34.61798 -31.04098 -29.82645 -28.52550 -26.78316 -23.66444 -23.23285 -20.97669 -18.66364 -18.50849 -17.41347 -16.79018 -16.40452 -16.12595 -15.52390 -15.34700 -14.70694 -14.28838 -13.83787 -13.72196 -13.28112 -12.96330 -12.77687 -12.76068 -12.31601 -12.19625 -11.93268 -11.40563 -11.25471 -10.99903 -10.63804 -10.53735 -8.94410 -8.16113 -6.24025 1.41101 1.43250 1.53829 2.42143 2.78630 3.16533 3.33818 3.49956 3.62355 3.80963 4.10868 4.23797 4.38093 4.52292 4.66531 4.71676 4.76133 4.81784 4.86850 5.12534 5.22494 5.43200 5.62565 5.72436 6.11919 6.39539 6.64070 6.90988 7.10231 7.43816 8.95358 Molecular weight = 201.12amu Principal moments of inertia in cm(-1) A = 0.055931 B = 0.009494 C = 0.008858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.499917 B = 2948.479143 C = 3160.318017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.518 5.518 3 C 0.217 3.783 4 C -0.513 4.513 5 H 0.059 0.941 6 C -0.001 4.001 7 N -0.937 5.937 8 Si 0.968 3.032 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.265 1.265 12 C 0.039 3.961 13 H 0.039 0.961 14 C 0.060 3.940 15 O -0.384 6.384 16 C 0.026 3.974 17 C 0.077 3.923 18 H 0.067 0.933 19 O -0.544 6.544 20 H 0.082 0.918 21 H 0.057 0.943 22 H 0.013 0.987 23 H 0.021 0.979 24 H -0.053 1.053 25 H 0.262 0.738 26 H 0.107 0.893 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.120 0.880 30 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.250 -11.552 -2.521 11.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.244 5.244 3 C 0.091 3.909 4 C -0.551 4.551 5 H 0.077 0.923 6 C -0.199 4.199 7 N -0.578 5.578 8 Si 0.793 3.207 9 H -0.200 1.200 10 H -0.208 1.208 11 H -0.189 1.189 12 C -0.070 4.070 13 H 0.057 0.943 14 C -0.016 4.016 15 O -0.302 6.302 16 C -0.051 4.051 17 C 0.017 3.983 18 H 0.085 0.915 19 O -0.349 6.349 20 H 0.101 0.899 21 H 0.076 0.924 22 H 0.032 0.968 23 H 0.039 0.961 24 H -0.035 1.035 25 H 0.071 0.929 26 H 0.125 0.875 27 H 0.093 0.907 28 H 0.090 0.910 29 H 0.138 0.862 30 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -0.136 -11.541 -2.283 11.766 hybrid contribution 0.283 1.239 -0.098 1.275 sum 0.148 -10.302 -2.381 10.575 Atomic orbital electron populations 1.22382 0.88008 1.01916 0.99665 1.62020 1.07225 1.15569 1.39551 1.19333 0.94699 0.82860 0.94043 1.21424 1.34144 0.97224 1.02303 0.92316 1.25887 0.95276 0.98092 1.00602 1.70096 1.39771 1.11806 1.36152 0.85398 0.78894 0.77203 0.79177 1.19987 1.20822 1.18907 1.23250 0.95104 0.95949 0.92735 0.94294 1.23554 0.91174 0.85464 1.01448 1.89062 1.22709 1.54652 1.63801 1.24244 0.89987 0.93519 0.97327 1.23199 0.94481 0.93730 0.86902 0.91520 1.86977 1.35829 1.76552 1.35576 0.89903 0.92380 0.96824 0.96121 1.03545 0.92906 0.87461 0.90739 0.90965 0.86206 0.77154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.11 8.83 127.69 1.13 2.23 16 2 N -0.52 -23.13 4.00 -895.07 -3.58 -26.71 16 3 C 0.22 11.99 4.22 85.56 0.36 12.35 16 4 C -0.51 -30.01 8.37 25.60 0.21 -29.80 16 5 H 0.06 3.39 7.18 -2.91 -0.02 3.37 16 6 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 7 N -0.94 -57.82 13.29 21.45 0.28 -57.53 16 8 Si 0.97 45.41 29.54 68.60 2.03 47.44 16 9 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 10 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 11 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 12 C 0.04 1.46 2.89 46.03 0.13 1.59 16 13 H 0.04 1.52 8.08 -2.39 -0.02 1.50 16 14 C 0.06 1.78 6.10 72.48 0.44 2.22 16 15 O -0.38 -11.14 11.65 -148.98 -1.74 -12.88 16 16 C 0.03 0.67 7.36 72.48 0.53 1.20 16 17 C 0.08 2.52 4.19 31.71 0.13 2.65 16 18 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 19 O -0.54 -20.18 10.73 -148.98 -1.60 -21.78 16 20 H 0.08 2.61 6.45 -2.39 -0.02 2.60 16 21 H 0.06 2.49 6.65 -2.39 -0.02 2.48 16 22 H 0.01 0.50 8.12 -2.39 -0.02 0.48 16 23 H 0.02 1.24 6.40 -2.39 -0.02 1.22 16 24 H -0.05 -3.21 8.12 -2.39 -0.02 -3.23 16 25 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 26 H 0.11 2.72 8.14 -2.39 -0.02 2.70 16 27 H 0.07 2.19 6.84 -2.39 -0.02 2.17 16 28 H 0.07 1.82 8.08 -2.39 -0.02 1.80 16 29 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 30 H 0.38 9.86 9.11 -74.05 -0.67 9.19 16 Total: -1.00 -70.06 245.71 -0.74 -70.80 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: 0.46 Total: 7.84 kcal Atomic # 6 Polarization: -10.58 SS G_CDS: 3.41 Total: -7.17 kcal Atomic # 7 Polarization: -80.95 SS G_CDS: -3.29 Total: -84.25 kcal Atomic # 8 Polarization: -31.32 SS G_CDS: -3.34 Total: -34.65 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Total: -70.06 -0.74 -70.80 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307574121.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.572 kcal (2) G-P(sol) polarization free energy of solvation -70.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds