Wall clock time and date at job start Mon Mar 30 2020 02:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86797 * 120.00452 * 2 1 4 4 H 1.48497 * 109.47097 * 239.99666 * 3 2 1 5 5 H 1.48494 * 109.47165 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.46979 * 119.99785 * 3 2 1 7 7 C 1.38953 * 119.99295 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99462 * 180.02562 * 7 2 1 9 9 N 1.37092 * 120.00522 * 359.97438 * 7 2 1 10 10 C 1.34777 * 120.00474 * 180.02562 * 9 7 2 11 11 O 1.21294 * 119.99779 * 0.02562 * 10 9 7 12 12 C 1.50697 * 120.00029 * 180.02562 * 10 9 7 13 13 H 1.09000 * 110.82119 * 56.66239 * 12 10 9 14 14 C 1.54887 * 110.75601 * 180.02562 * 12 10 9 15 15 C 1.54266 * 104.19888 * 156.25414 * 14 12 10 16 16 C 1.53872 * 106.59640 * 336.38805 * 15 14 12 17 17 H 1.08996 * 110.03362 * 240.71095 * 16 15 14 18 18 F 1.39902 * 110.03209 * 119.28351 * 16 15 14 19 19 C 1.54266 * 106.60044 * 359.97438 * 16 15 14 20 20 H 0.97011 * 119.99464 * 0.02562 * 1 2 3 21 21 H 0.97010 * 119.99790 * 0.02562 * 9 7 2 22 22 H 1.09001 * 110.48816 * 37.57341 * 14 12 10 23 23 H 1.09004 * 110.48531 * 274.93556 * 14 12 10 24 24 H 1.09003 * 110.03179 * 95.67576 * 15 14 12 25 25 H 1.09003 * 110.02980 * 217.05505 * 15 14 12 26 26 H 1.09002 * 110.48438 * 142.28717 * 19 16 15 27 27 H 1.08998 * 110.48431 * 264.79545 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 3.1020 1.6962 -1.2124 5 1 1.2834 2.7464 0.0006 6 1 3.1019 1.6962 1.2125 7 6 2.0087 -1.2035 0.0005 8 1 3.0887 -1.2035 0.0010 9 7 1.3232 -2.3907 0.0016 10 6 1.9970 -3.5580 0.0026 11 8 3.2099 -3.5581 0.0031 12 6 1.2434 -4.8630 0.0032 13 1 0.5651 -4.9190 -0.8482 14 6 2.2231 -6.0626 0.0051 15 6 1.4017 -7.2210 0.6077 16 6 0.2879 -6.5774 1.4519 17 1 0.3836 -6.8849 2.4932 18 9 -0.9659 -6.9496 0.9551 19 6 0.4716 -5.0503 1.3334 20 1 -0.4850 0.8402 -0.0004 21 1 0.3531 -2.3906 0.0016 22 1 3.0907 -5.8457 0.6282 23 1 2.5332 -6.3034 -1.0118 24 1 0.9655 -7.8235 -0.1891 25 1 2.0383 -7.8414 1.2386 26 1 -0.4967 -4.5521 1.2855 27 1 1.0542 -4.6700 2.1724 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307646886.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:35 Heat of formation + Delta-G solvation = -110.818322 kcal Electronic energy + Delta-G solvation = -12906.785516 eV Core-core repulsion = 10384.881226 eV Total energy + Delta-G solvation = -2521.904290 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 201.091 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -47.43898 -38.73564 -36.12890 -33.91265 -31.26105 -28.85966 -28.02226 -24.87736 -21.50060 -20.30097 -18.85772 -17.87842 -16.71891 -15.74669 -15.43625 -14.80203 -14.37840 -14.00111 -13.82954 -13.26042 -12.73098 -12.51759 -11.72497 -11.48913 -11.14443 -11.05008 -10.84968 -10.57404 -10.48736 -10.43633 -10.31873 -10.18561 -9.51147 -8.35643 -7.97824 -6.42293 -3.83439 3.19329 3.25453 3.29803 3.86448 4.16567 4.56800 4.59586 4.78679 4.92675 5.25827 5.27157 5.53288 5.59621 5.72948 5.81099 5.87401 5.94451 6.15675 6.40891 6.43794 6.53660 6.69178 7.54151 8.05004 8.60023 9.16421 9.54350 10.05401 10.75135 Molecular weight = 201.09amu Principal moments of inertia in cm(-1) A = 0.061935 B = 0.008296 C = 0.007536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 451.975169 B = 3374.292445 C = 3714.729054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.024 3.976 3 Si 0.931 3.069 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.304 4.304 8 H 0.102 0.898 9 N -0.559 5.559 10 C 0.447 3.553 11 O -0.596 6.596 12 C -0.105 4.105 13 H 0.089 0.911 14 C -0.100 4.100 15 C -0.150 4.150 16 C 0.085 3.915 17 H 0.084 0.916 18 F -0.216 7.216 19 C -0.138 4.138 20 H 0.273 0.727 21 H 0.393 0.607 22 H 0.083 0.917 23 H 0.069 0.931 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.083 0.917 27 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.277 -9.730 2.164 10.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.178 4.178 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.433 4.433 8 H 0.120 0.880 9 N -0.194 5.194 10 C 0.233 3.767 11 O -0.482 6.482 12 C -0.127 4.127 13 H 0.107 0.893 14 C -0.137 4.137 15 C -0.188 4.188 16 C 0.049 3.951 17 H 0.102 0.898 18 F -0.197 7.197 19 C -0.176 4.176 20 H 0.082 0.918 21 H 0.227 0.773 22 H 0.101 0.899 23 H 0.087 0.913 24 H 0.095 0.905 25 H 0.094 0.906 26 H 0.102 0.898 27 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.643 -9.556 2.153 9.817 hybrid contribution -0.347 0.873 -0.042 0.941 sum -0.990 -8.683 2.111 8.990 Atomic orbital electron populations 1.69614 1.05954 1.28320 1.50212 1.25276 0.95626 0.99751 0.97183 0.85913 0.78772 0.80435 0.79078 1.19878 1.20949 1.19890 1.19688 0.93377 0.82372 1.47878 0.87972 1.41907 1.09264 1.04627 1.63556 1.19697 0.88042 0.84677 0.84301 1.90501 1.13953 1.87269 1.56484 1.22138 0.97603 0.94830 0.98120 0.89318 1.22138 0.98009 0.91930 1.01667 1.22822 0.97162 0.98943 0.99902 1.22245 0.79138 0.95784 0.97941 0.89839 1.92801 1.44307 1.92825 1.89768 1.22957 1.01965 0.94017 0.98699 0.91760 0.77336 0.89870 0.91264 0.90536 0.90599 0.89812 0.89538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.64 13.05 55.50 0.72 -23.92 15 2 C 0.02 0.63 5.50 -17.47 -0.10 0.54 15 3 Si 0.93 21.08 29.55 -169.99 -5.02 16.06 15 4 H -0.27 -6.15 7.11 56.52 0.40 -5.75 15 5 H -0.28 -6.28 7.11 56.52 0.40 -5.87 15 6 H -0.27 -6.14 7.11 56.52 0.40 -5.74 15 7 C -0.30 -8.53 9.68 -14.93 -0.14 -8.67 15 8 H 0.10 2.99 7.16 -52.49 -0.38 2.62 15 9 N -0.56 -14.33 5.29 -10.96 -0.06 -14.39 15 10 C 0.45 10.66 7.09 -10.99 -0.08 10.58 15 11 O -0.60 -16.24 15.30 5.55 0.08 -16.15 15 12 C -0.11 -1.90 3.29 -89.77 -0.30 -2.20 15 13 H 0.09 1.53 8.14 -51.93 -0.42 1.11 15 14 C -0.10 -1.57 5.90 -25.07 -0.15 -1.72 15 15 C -0.15 -1.90 6.65 -25.61 -0.17 -2.07 15 16 C 0.09 1.14 4.68 -25.61 -0.12 1.02 15 17 H 0.08 0.93 8.14 -51.93 -0.42 0.51 15 18 F -0.22 -3.24 17.05 2.25 0.04 -3.20 15 19 C -0.14 -2.18 6.05 -25.06 -0.15 -2.33 15 20 H 0.27 7.06 8.31 -40.82 -0.34 6.73 15 21 H 0.39 9.72 7.90 -40.82 -0.32 9.40 15 22 H 0.08 1.43 7.44 -51.93 -0.39 1.05 15 23 H 0.07 1.05 8.14 -51.93 -0.42 0.63 15 24 H 0.08 0.91 8.02 -51.93 -0.42 0.50 15 25 H 0.08 0.80 8.14 -51.93 -0.42 0.38 15 26 H 0.08 1.32 8.11 -51.93 -0.42 0.89 15 27 H 0.09 1.39 8.05 -51.93 -0.42 0.97 15 LS Contribution 237.95 15.07 3.59 3.59 Total: -1.00 -30.44 237.95 -5.02 -35.45 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -3.17 Total: 7.42 kcal Atomic # 6 Polarization: -3.65 SS G_CDS: -1.20 Total: -4.85 kcal Atomic # 7 Polarization: -38.98 SS G_CDS: 0.67 Total: -38.31 kcal Atomic # 8 Polarization: -16.24 SS G_CDS: 0.08 Total: -16.15 kcal Atomic # 9 Polarization: -3.24 SS G_CDS: 0.04 Total: -3.20 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -30.44 -5.02 -35.45 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307646886.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.365 kcal (2) G-P(sol) polarization free energy of solvation -30.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds