Wall clock time and date at job start Mon Mar 30 2020 02:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86797 * 120.00452 * 2 1 4 4 H 1.48497 * 109.47097 * 239.99666 * 3 2 1 5 5 H 1.48494 * 109.47165 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.46979 * 119.99785 * 3 2 1 7 7 C 1.38953 * 119.99295 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99462 * 180.02562 * 7 2 1 9 9 N 1.37092 * 120.00522 * 359.97438 * 7 2 1 10 10 C 1.34777 * 120.00474 * 180.02562 * 9 7 2 11 11 O 1.21294 * 119.99779 * 0.02562 * 10 9 7 12 12 C 1.50697 * 120.00029 * 180.02562 * 10 9 7 13 13 H 1.09000 * 110.82119 * 56.66239 * 12 10 9 14 14 C 1.54887 * 110.75601 * 180.02562 * 12 10 9 15 15 C 1.54266 * 104.19888 * 156.25414 * 14 12 10 16 16 C 1.53872 * 106.59640 * 336.38805 * 15 14 12 17 17 H 1.08996 * 110.03362 * 240.71095 * 16 15 14 18 18 F 1.39902 * 110.03209 * 119.28351 * 16 15 14 19 19 C 1.54266 * 106.60044 * 359.97438 * 16 15 14 20 20 H 0.97011 * 119.99464 * 0.02562 * 1 2 3 21 21 H 0.97010 * 119.99790 * 0.02562 * 9 7 2 22 22 H 1.09001 * 110.48816 * 37.57341 * 14 12 10 23 23 H 1.09004 * 110.48531 * 274.93556 * 14 12 10 24 24 H 1.09003 * 110.03179 * 95.67576 * 15 14 12 25 25 H 1.09003 * 110.02980 * 217.05505 * 15 14 12 26 26 H 1.09002 * 110.48438 * 142.28717 * 19 16 15 27 27 H 1.08998 * 110.48431 * 264.79545 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 3.1020 1.6962 -1.2124 5 1 1.2834 2.7464 0.0006 6 1 3.1019 1.6962 1.2125 7 6 2.0087 -1.2035 0.0005 8 1 3.0887 -1.2035 0.0010 9 7 1.3232 -2.3907 0.0016 10 6 1.9970 -3.5580 0.0026 11 8 3.2099 -3.5581 0.0031 12 6 1.2434 -4.8630 0.0032 13 1 0.5651 -4.9190 -0.8482 14 6 2.2231 -6.0626 0.0051 15 6 1.4017 -7.2210 0.6077 16 6 0.2879 -6.5774 1.4519 17 1 0.3836 -6.8849 2.4932 18 9 -0.9659 -6.9496 0.9551 19 6 0.4716 -5.0503 1.3334 20 1 -0.4850 0.8402 -0.0004 21 1 0.3531 -2.3906 0.0016 22 1 3.0907 -5.8457 0.6282 23 1 2.5332 -6.3034 -1.0118 24 1 0.9655 -7.8235 -0.1891 25 1 2.0383 -7.8414 1.2386 26 1 -0.4967 -4.5521 1.2855 27 1 1.0542 -4.6700 2.1724 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307646886.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:35 Heat of formation + Delta-G solvation = -130.845653 kcal Electronic energy + Delta-G solvation = -12907.653966 eV Core-core repulsion = 10384.881226 eV Total energy + Delta-G solvation = -2522.772740 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 201.091 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -48.54951 -40.51489 -37.60738 -35.96440 -33.31020 -30.20744 -29.28658 -26.85375 -23.07617 -21.41021 -20.62667 -19.85418 -18.21340 -17.07839 -16.96795 -16.44772 -15.96838 -15.71260 -15.27412 -14.78164 -14.29556 -14.02823 -13.59207 -12.94839 -12.89966 -12.50126 -12.37410 -12.17720 -12.05183 -11.77125 -11.60562 -11.57243 -11.49553 -10.31758 -10.05230 -8.49051 -5.98911 1.38442 1.40713 1.52129 1.99853 2.28580 3.12545 3.15941 3.39915 3.53593 3.76727 4.00348 4.28390 4.39987 4.45918 4.48475 4.59628 4.69803 4.87453 5.06059 5.15876 5.32919 5.38477 5.43020 5.96915 6.55224 7.08387 7.52446 8.06825 8.68038 Molecular weight = 201.09amu Principal moments of inertia in cm(-1) A = 0.061935 B = 0.008296 C = 0.007536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 451.975169 B = 3374.292445 C = 3714.729054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.012 4.012 3 Si 0.995 3.005 4 H -0.271 1.271 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.340 4.340 8 H 0.080 0.920 9 N -0.568 5.568 10 C 0.444 3.556 11 O -0.634 6.634 12 C -0.104 4.104 13 H 0.099 0.901 14 C -0.099 4.099 15 C -0.139 4.139 16 C 0.090 3.910 17 H 0.116 0.884 18 F -0.224 7.224 19 C -0.137 4.137 20 H 0.279 0.721 21 H 0.396 0.604 22 H 0.065 0.935 23 H 0.072 0.928 24 H 0.088 0.912 25 H 0.104 0.896 26 H 0.081 0.919 27 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.697 -10.476 2.560 10.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.212 4.212 3 Si 0.818 3.182 4 H -0.196 1.196 5 H -0.194 1.194 6 H -0.195 1.195 7 C -0.470 4.470 8 H 0.098 0.902 9 N -0.204 5.204 10 C 0.232 3.768 11 O -0.522 6.522 12 C -0.126 4.126 13 H 0.117 0.883 14 C -0.137 4.137 15 C -0.176 4.176 16 C 0.054 3.946 17 H 0.133 0.867 18 F -0.205 7.205 19 C -0.175 4.175 20 H 0.088 0.912 21 H 0.229 0.771 22 H 0.083 0.917 23 H 0.090 0.910 24 H 0.107 0.893 25 H 0.122 0.878 26 H 0.099 0.901 27 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.087 -10.319 2.549 10.685 hybrid contribution -0.212 1.090 -0.179 1.125 sum -1.299 -9.229 2.370 9.616 Atomic orbital electron populations 1.69680 1.06952 1.29500 1.49885 1.26091 0.96538 1.02549 0.95990 0.84958 0.77755 0.76410 0.79038 1.19637 1.19431 1.19535 1.19698 0.92804 0.84120 1.50366 0.90172 1.41991 1.09304 1.04810 1.64248 1.20728 0.87927 0.86043 0.82064 1.90466 1.15937 1.88147 1.57682 1.22167 0.98129 0.92223 1.00049 0.88287 1.22132 0.97352 0.92211 1.01960 1.22776 0.96647 0.97716 1.00474 1.22315 0.78896 0.93508 0.99898 0.86651 1.92794 1.44960 1.92673 1.90045 1.22941 1.01209 0.96525 0.96854 0.91183 0.77059 0.91663 0.90955 0.89307 0.87777 0.90053 0.90153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.23 13.05 21.66 0.28 -49.94 15 2 C -0.01 -0.63 5.50 84.93 0.47 -0.16 15 3 Si 1.00 43.04 29.55 68.60 2.03 45.06 15 4 H -0.27 -11.58 7.11 99.48 0.71 -10.87 15 5 H -0.27 -10.97 7.11 99.48 0.71 -10.27 15 6 H -0.27 -11.49 7.11 99.48 0.71 -10.78 15 7 C -0.34 -19.60 9.68 84.04 0.81 -18.78 15 8 H 0.08 4.88 7.16 -2.91 -0.02 4.86 15 9 N -0.57 -29.87 5.29 -306.98 -1.62 -31.49 15 10 C 0.44 21.61 7.09 87.66 0.62 22.23 15 11 O -0.63 -35.52 15.30 -3.07 -0.05 -35.57 15 12 C -0.10 -3.71 3.29 -10.24 -0.03 -3.75 15 13 H 0.10 3.33 8.14 -2.39 -0.02 3.31 15 14 C -0.10 -2.98 5.90 31.67 0.19 -2.79 15 15 C -0.14 -3.02 6.65 31.32 0.21 -2.81 15 16 C 0.09 2.12 4.68 31.32 0.15 2.27 15 17 H 0.12 2.09 8.14 -2.39 -0.02 2.07 15 18 F -0.22 -6.05 17.05 44.97 0.77 -5.28 15 19 C -0.14 -4.14 6.05 31.68 0.19 -3.95 15 20 H 0.28 14.23 8.31 -92.70 -0.77 13.46 15 21 H 0.40 19.98 7.90 -92.70 -0.73 19.25 15 22 H 0.06 2.21 7.44 -2.39 -0.02 2.19 15 23 H 0.07 2.11 8.14 -2.38 -0.02 2.09 15 24 H 0.09 1.78 8.02 -2.39 -0.02 1.76 15 25 H 0.10 1.75 8.14 -2.39 -0.02 1.73 15 26 H 0.08 2.48 8.11 -2.39 -0.02 2.46 15 27 H 0.08 2.52 8.05 -2.39 -0.02 2.50 15 Total: -1.00 -65.65 237.95 4.45 -61.20 By element: Atomic # 1 Polarization: 23.32 SS G_CDS: 0.44 Total: 23.77 kcal Atomic # 6 Polarization: -10.35 SS G_CDS: 2.60 Total: -7.74 kcal Atomic # 7 Polarization: -80.10 SS G_CDS: -1.34 Total: -81.44 kcal Atomic # 8 Polarization: -35.52 SS G_CDS: -0.05 Total: -35.57 kcal Atomic # 9 Polarization: -6.05 SS G_CDS: 0.77 Total: -5.28 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.06 kcal Total: -65.65 4.45 -61.20 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307646886.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.646 kcal (2) G-P(sol) polarization free energy of solvation -65.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds