Wall clock time and date at job start Mon Mar 30 2020 02:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86796 * 120.00342 * 2 1 4 4 H 1.48491 * 109.47274 * 270.00663 * 3 2 1 5 5 H 1.48505 * 109.46713 * 30.00740 * 3 2 1 6 6 H 1.48502 * 109.46813 * 150.00160 * 3 2 1 7 7 C 1.38958 * 119.99347 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99408 * 179.97438 * 7 2 1 9 9 N 1.37092 * 120.00096 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99729 * 179.72242 * 9 7 2 11 11 O 1.21293 * 120.00229 * 0.27992 * 10 9 7 12 12 C 1.50703 * 120.00290 * 180.27555 * 10 9 7 13 13 H 1.08999 * 110.43309 * 302.54554 * 12 10 9 14 14 C 1.54260 * 110.48905 * 180.02562 * 12 10 9 15 15 C 1.53874 * 106.59795 * 217.71135 * 14 12 10 16 16 C 1.54266 * 106.60216 * 0.02562 * 15 14 12 17 17 H 1.08998 * 110.48644 * 264.80318 * 16 15 14 18 18 F 1.39895 * 110.48657 * 142.28517 * 16 15 14 19 19 C 1.54892 * 110.48233 * 65.22587 * 12 10 9 20 20 H 0.97004 * 119.99790 * 359.97438 * 1 2 3 21 21 H 0.97001 * 120.00484 * 0.02562 * 9 7 2 22 22 H 1.09003 * 110.03156 * 336.99852 * 14 12 10 23 23 H 1.09003 * 110.03220 * 98.42541 * 14 12 10 24 24 H 1.09006 * 110.03250 * 119.28718 * 15 14 12 25 25 H 1.08996 * 110.03185 * 240.71348 * 15 14 12 26 26 H 1.08996 * 110.75850 * 274.93479 * 19 12 10 27 27 H 1.08999 * 110.75937 * 38.30948 * 19 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 2.4956 2.0464 -1.4000 5 1 1.4457 2.6525 0.7002 6 1 3.5458 1.4399 0.7000 7 6 2.0088 -1.2035 -0.0005 8 1 3.0888 -1.2035 -0.0010 9 7 1.3232 -2.3907 -0.0005 10 6 1.9970 -3.5579 -0.0067 11 8 3.2100 -3.5580 -0.0071 12 6 1.2435 -4.8630 -0.0130 13 1 0.5777 -4.9221 0.8480 14 6 2.2249 -6.0531 -0.0188 15 6 1.6045 -7.1301 -0.9260 16 6 0.2680 -6.5566 -1.4404 17 1 -0.5577 -6.8919 -0.8128 18 9 0.0540 -6.9318 -2.7710 19 6 0.4454 -5.0217 -1.3309 20 1 -0.4850 0.8401 0.0004 21 1 0.3532 -2.3907 -0.0005 22 1 3.1897 -5.7395 -0.4175 23 1 2.3468 -6.4415 0.9924 24 1 2.2683 -7.3392 -1.7650 25 1 1.4253 -8.0411 -0.3551 26 1 -0.5220 -4.5247 -1.2590 27 1 1.0160 -4.6381 -2.1767 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307646889.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:41 Heat of formation + Delta-G solvation = -111.258794 kcal Electronic energy + Delta-G solvation = -12883.520257 eV Core-core repulsion = 10361.596867 eV Total energy + Delta-G solvation = -2521.923390 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 201.091 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -47.41478 -38.83169 -36.18988 -33.94017 -31.28490 -28.84127 -27.92733 -24.87098 -21.47343 -20.50081 -18.76840 -17.86194 -16.81809 -15.86427 -15.33130 -14.75068 -14.35610 -13.97403 -13.82318 -13.33216 -12.77128 -12.67253 -11.75806 -11.55753 -11.16246 -11.03869 -10.85497 -10.62910 -10.44982 -10.40414 -10.21387 -10.15553 -9.53599 -8.38714 -7.99398 -6.43931 -3.84842 3.16542 3.25593 3.31454 3.84431 4.15456 4.53175 4.60696 4.80710 4.96961 5.11942 5.27604 5.53345 5.55072 5.67389 5.80858 5.90786 6.00217 6.13421 6.43838 6.45969 6.47103 6.71864 7.53265 8.03738 8.58254 9.15131 9.52437 10.03266 10.73629 Molecular weight = 201.09amu Principal moments of inertia in cm(-1) A = 0.059958 B = 0.008174 C = 0.007568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 466.877724 B = 3424.842458 C = 3698.779126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.023 3.977 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.303 4.303 8 H 0.103 0.897 9 N -0.558 5.558 10 C 0.446 3.554 11 O -0.595 6.595 12 C -0.103 4.103 13 H 0.089 0.911 14 C -0.107 4.107 15 C -0.148 4.148 16 C 0.083 3.917 17 H 0.089 0.911 18 F -0.216 7.216 19 C -0.136 4.136 20 H 0.272 0.728 21 H 0.393 0.607 22 H 0.089 0.911 23 H 0.065 0.935 24 H 0.076 0.924 25 H 0.071 0.929 26 H 0.081 0.919 27 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.120 -9.603 -0.581 9.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.178 4.178 3 Si 0.757 3.243 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.432 4.432 8 H 0.121 0.879 9 N -0.193 5.193 10 C 0.232 3.768 11 O -0.480 6.480 12 C -0.125 4.125 13 H 0.107 0.893 14 C -0.145 4.145 15 C -0.186 4.186 16 C 0.047 3.953 17 H 0.107 0.893 18 F -0.197 7.197 19 C -0.174 4.174 20 H 0.082 0.918 21 H 0.226 0.774 22 H 0.108 0.892 23 H 0.084 0.916 24 H 0.094 0.906 25 H 0.090 0.910 26 H 0.100 0.900 27 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.449 -9.431 -0.601 9.560 hybrid contribution -0.319 0.868 -0.041 0.925 sum -1.768 -8.563 -0.642 8.767 Atomic orbital electron populations 1.69614 1.05963 1.28236 1.50313 1.25277 0.95632 0.99770 0.97166 0.85851 0.79242 0.80741 0.78428 1.20360 1.20895 1.19391 1.19740 0.93416 0.82336 1.47738 0.87905 1.41884 1.09232 1.04612 1.63566 1.19682 0.88081 0.84751 0.84296 1.90496 1.13982 1.87067 1.56484 1.21895 0.97566 0.95102 0.97938 0.89318 1.21967 1.00228 0.92838 0.99430 1.22748 0.96064 0.99120 1.00649 1.22529 0.98685 0.95849 0.78240 0.89307 1.92780 1.96284 1.92768 1.37837 1.23046 1.01389 0.94170 0.98820 0.91810 0.77356 0.89202 0.91589 0.90560 0.91032 0.90003 0.89732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.46 13.05 55.50 0.72 -23.74 15 2 C 0.02 0.63 5.50 -17.46 -0.10 0.53 15 3 Si 0.93 21.02 29.55 -169.99 -5.02 16.00 15 4 H -0.28 -6.21 7.11 56.52 0.40 -5.81 15 5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 15 6 H -0.27 -6.07 7.11 56.52 0.40 -5.67 15 7 C -0.30 -8.46 9.68 -14.93 -0.14 -8.61 15 8 H 0.10 3.01 7.16 -52.49 -0.38 2.64 15 9 N -0.56 -14.16 5.28 -10.96 -0.06 -14.22 15 10 C 0.45 10.54 7.08 -10.98 -0.08 10.46 15 11 O -0.59 -16.16 15.00 5.55 0.08 -16.08 15 12 C -0.10 -1.80 3.25 -90.11 -0.29 -2.09 15 13 H 0.09 1.37 8.14 -51.93 -0.42 0.95 15 14 C -0.11 -1.67 6.18 -25.62 -0.16 -1.83 15 15 C -0.15 -1.91 6.61 -25.61 -0.17 -2.08 15 16 C 0.08 1.12 4.66 -25.07 -0.12 1.00 15 17 H 0.09 0.98 8.14 -51.93 -0.42 0.56 15 18 F -0.22 -3.29 17.17 2.25 0.04 -3.25 15 19 C -0.14 -2.15 6.10 -24.73 -0.15 -2.30 15 20 H 0.27 6.98 8.31 -40.82 -0.34 6.65 15 21 H 0.39 9.53 7.90 -40.82 -0.32 9.21 15 22 H 0.09 1.64 6.85 -51.93 -0.36 1.28 15 23 H 0.07 0.93 8.14 -51.93 -0.42 0.50 15 24 H 0.08 1.00 8.11 -51.93 -0.42 0.58 15 25 H 0.07 0.76 8.14 -51.93 -0.42 0.33 15 26 H 0.08 1.21 8.14 -51.93 -0.42 0.79 15 27 H 0.08 1.50 8.05 -51.93 -0.42 1.08 15 LS Contribution 237.51 15.07 3.58 3.58 Total: -1.00 -30.39 237.51 -5.00 -35.40 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -3.14 Total: 7.23 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: -1.21 Total: -4.92 kcal Atomic # 7 Polarization: -38.63 SS G_CDS: 0.67 Total: -37.96 kcal Atomic # 8 Polarization: -16.16 SS G_CDS: 0.08 Total: -16.08 kcal Atomic # 9 Polarization: -3.29 SS G_CDS: 0.04 Total: -3.25 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -30.39 -5.00 -35.40 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307646889.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.861 kcal (2) G-P(sol) polarization free energy of solvation -30.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds