Wall clock time and date at job start Mon Mar 30 2020 02:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86796 * 120.00342 * 2 1 4 4 H 1.48491 * 109.47274 * 270.00663 * 3 2 1 5 5 H 1.48505 * 109.46713 * 30.00740 * 3 2 1 6 6 H 1.48502 * 109.46813 * 150.00160 * 3 2 1 7 7 C 1.38958 * 119.99347 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99408 * 179.97438 * 7 2 1 9 9 N 1.37092 * 120.00096 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99729 * 179.72242 * 9 7 2 11 11 O 1.21293 * 120.00229 * 0.27992 * 10 9 7 12 12 C 1.50703 * 120.00290 * 180.27555 * 10 9 7 13 13 H 1.08999 * 110.43309 * 302.54554 * 12 10 9 14 14 C 1.54260 * 110.48905 * 180.02562 * 12 10 9 15 15 C 1.53874 * 106.59795 * 217.71135 * 14 12 10 16 16 C 1.54266 * 106.60216 * 0.02562 * 15 14 12 17 17 H 1.08998 * 110.48644 * 264.80318 * 16 15 14 18 18 F 1.39895 * 110.48657 * 142.28517 * 16 15 14 19 19 C 1.54892 * 110.48233 * 65.22587 * 12 10 9 20 20 H 0.97004 * 119.99790 * 359.97438 * 1 2 3 21 21 H 0.97001 * 120.00484 * 0.02562 * 9 7 2 22 22 H 1.09003 * 110.03156 * 336.99852 * 14 12 10 23 23 H 1.09003 * 110.03220 * 98.42541 * 14 12 10 24 24 H 1.09006 * 110.03250 * 119.28718 * 15 14 12 25 25 H 1.08996 * 110.03185 * 240.71348 * 15 14 12 26 26 H 1.08996 * 110.75850 * 274.93479 * 19 12 10 27 27 H 1.08999 * 110.75937 * 38.30948 * 19 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 2.4956 2.0464 -1.4000 5 1 1.4457 2.6525 0.7002 6 1 3.5458 1.4399 0.7000 7 6 2.0088 -1.2035 -0.0005 8 1 3.0888 -1.2035 -0.0010 9 7 1.3232 -2.3907 -0.0005 10 6 1.9970 -3.5579 -0.0067 11 8 3.2100 -3.5580 -0.0071 12 6 1.2435 -4.8630 -0.0130 13 1 0.5777 -4.9221 0.8480 14 6 2.2249 -6.0531 -0.0188 15 6 1.6045 -7.1301 -0.9260 16 6 0.2680 -6.5566 -1.4404 17 1 -0.5577 -6.8919 -0.8128 18 9 0.0540 -6.9318 -2.7710 19 6 0.4454 -5.0217 -1.3309 20 1 -0.4850 0.8401 0.0004 21 1 0.3532 -2.3907 -0.0005 22 1 3.1897 -5.7395 -0.4175 23 1 2.3468 -6.4415 0.9924 24 1 2.2683 -7.3392 -1.7650 25 1 1.4253 -8.0411 -0.3551 26 1 -0.5220 -4.5247 -1.2590 27 1 1.0160 -4.6381 -2.1767 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307646889.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:41 Heat of formation + Delta-G solvation = -131.459381 kcal Electronic energy + Delta-G solvation = -12884.396220 eV Core-core repulsion = 10361.596867 eV Total energy + Delta-G solvation = -2522.799353 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 201.091 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -48.54761 -40.57483 -37.67513 -35.97821 -33.31707 -30.18334 -29.19702 -26.83396 -23.01932 -21.66105 -20.51972 -19.79312 -18.27547 -17.20221 -16.92257 -16.36288 -15.94093 -15.68071 -15.23270 -14.81186 -14.34782 -14.20574 -13.60056 -13.02969 -12.85016 -12.49756 -12.42076 -12.17229 -12.04301 -11.87520 -11.56549 -11.53840 -11.34366 -10.32470 -10.04771 -8.49563 -5.98801 1.36307 1.40613 1.53441 2.00033 2.28394 3.11216 3.15628 3.36651 3.61510 3.75112 3.95253 4.28958 4.34450 4.41911 4.49298 4.62706 4.80090 4.85945 5.08412 5.19059 5.34127 5.38744 5.41772 5.97192 6.55886 7.08867 7.52867 8.07784 8.67705 Molecular weight = 201.09amu Principal moments of inertia in cm(-1) A = 0.059958 B = 0.008174 C = 0.007568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 466.877724 B = 3424.842458 C = 3698.779126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.011 4.011 3 Si 0.993 3.007 4 H -0.271 1.271 5 H -0.269 1.269 6 H -0.273 1.273 7 C -0.340 4.340 8 H 0.078 0.922 9 N -0.567 5.567 10 C 0.441 3.559 11 O -0.637 6.637 12 C -0.097 4.097 13 H 0.118 0.882 14 C -0.105 4.105 15 C -0.139 4.139 16 C 0.089 3.911 17 H 0.128 0.872 18 F -0.226 7.226 19 C -0.137 4.137 20 H 0.279 0.721 21 H 0.397 0.603 22 H 0.055 0.945 23 H 0.086 0.914 24 H 0.070 0.930 25 H 0.107 0.893 26 H 0.092 0.908 27 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.216 -10.424 -0.168 10.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.211 4.211 3 Si 0.817 3.183 4 H -0.197 1.197 5 H -0.193 1.193 6 H -0.197 1.197 7 C -0.469 4.469 8 H 0.096 0.904 9 N -0.202 5.202 10 C 0.229 3.771 11 O -0.525 6.525 12 C -0.118 4.118 13 H 0.136 0.864 14 C -0.143 4.143 15 C -0.177 4.177 16 C 0.053 3.947 17 H 0.146 0.854 18 F -0.206 7.206 19 C -0.175 4.175 20 H 0.088 0.912 21 H 0.231 0.769 22 H 0.073 0.927 23 H 0.104 0.896 24 H 0.088 0.912 25 H 0.126 0.874 26 H 0.111 0.889 27 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.571 -10.266 -0.194 10.585 hybrid contribution 0.041 1.108 -0.173 1.122 sum -2.530 -9.158 -0.367 9.509 Atomic orbital electron populations 1.69669 1.06838 1.29428 1.49926 1.26054 0.96552 1.02433 0.96025 0.84924 0.77928 0.76801 0.78668 1.19674 1.19338 1.19737 1.19709 0.92742 0.84204 1.50290 0.90403 1.41952 1.09347 1.04699 1.64236 1.20822 0.87991 0.86321 0.81985 1.90466 1.16205 1.88050 1.57753 1.21918 0.97999 0.91858 1.00029 0.86361 1.21952 0.98252 0.92972 1.01153 1.22716 0.95388 0.99352 1.00253 1.22645 1.00339 0.93498 0.78191 0.85434 1.92767 1.96379 1.92621 1.38882 1.23030 1.01060 0.96781 0.96666 0.91171 0.76861 0.92658 0.89574 0.91156 0.87403 0.88908 0.92601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.55 13.05 21.67 0.28 -49.26 15 2 C -0.01 -0.56 5.50 84.93 0.47 -0.10 15 3 Si 0.99 43.01 29.55 68.60 2.03 45.04 15 4 H -0.27 -11.43 7.11 99.48 0.71 -10.73 15 5 H -0.27 -10.95 7.11 99.48 0.71 -10.24 15 6 H -0.27 -11.86 7.11 99.48 0.71 -11.15 15 7 C -0.34 -19.52 9.68 84.04 0.81 -18.70 15 8 H 0.08 4.77 7.16 -2.91 -0.02 4.75 15 9 N -0.57 -29.37 5.28 -306.98 -1.62 -30.99 15 10 C 0.44 21.21 7.08 87.66 0.62 21.83 15 11 O -0.64 -35.87 15.00 -3.07 -0.05 -35.92 15 12 C -0.10 -3.25 3.25 -10.47 -0.03 -3.28 15 13 H 0.12 3.33 8.14 -2.39 -0.02 3.31 15 14 C -0.11 -3.12 6.18 31.32 0.19 -2.93 15 15 C -0.14 -3.18 6.61 31.32 0.21 -2.97 15 16 C 0.09 2.11 4.66 31.67 0.15 2.26 15 17 H 0.13 2.15 8.14 -2.39 -0.02 2.13 15 18 F -0.23 -6.32 17.17 44.97 0.77 -5.55 15 19 C -0.14 -4.15 6.10 31.89 0.19 -3.96 15 20 H 0.28 14.04 8.31 -92.71 -0.77 13.27 15 21 H 0.40 19.46 7.90 -92.71 -0.73 18.73 15 22 H 0.05 2.04 6.85 -2.39 -0.02 2.02 15 23 H 0.09 2.19 8.14 -2.39 -0.02 2.17 15 24 H 0.07 1.70 8.11 -2.38 -0.02 1.68 15 25 H 0.11 1.75 8.14 -2.39 -0.02 1.73 15 26 H 0.09 2.58 8.14 -2.39 -0.02 2.56 15 27 H 0.06 2.00 8.05 -2.39 -0.02 1.98 15 Total: -1.00 -66.80 237.51 4.47 -62.33 By element: Atomic # 1 Polarization: 21.77 SS G_CDS: 0.45 Total: 22.21 kcal Atomic # 6 Polarization: -10.46 SS G_CDS: 2.61 Total: -7.85 kcal Atomic # 7 Polarization: -78.92 SS G_CDS: -1.34 Total: -80.26 kcal Atomic # 8 Polarization: -35.87 SS G_CDS: -0.05 Total: -35.92 kcal Atomic # 9 Polarization: -6.32 SS G_CDS: 0.77 Total: -5.55 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Total: -66.80 4.47 -62.33 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307646889.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.132 kcal (2) G-P(sol) polarization free energy of solvation -66.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds