Wall clock time and date at job start Mon Mar 30 2020 02:51:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42896 * 114.00043 * 2 1 4 4 C 1.52998 * 109.47316 * 180.02562 * 3 2 1 5 5 O 1.42905 * 113.38079 * 313.07999 * 4 3 2 6 6 C 1.53506 * 114.17302 * 180.02562 * 4 3 2 7 7 N 1.47486 * 87.93221 * 220.32775 * 6 4 3 8 8 C 1.46902 * 110.99695 * 138.70374 * 7 6 4 9 9 C 1.50706 * 109.46862 * 170.00231 * 8 7 6 10 10 H 1.08001 * 119.99675 * 359.97438 * 9 8 7 11 11 C 1.37873 * 119.99817 * 179.97438 * 9 8 7 12 12 N 1.31511 * 120.00230 * 359.97438 * 11 9 8 13 13 Si 1.86808 * 119.99759 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47126 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.47300 * 120.00218 * 13 11 9 16 16 H 1.48505 * 109.46896 * 240.00046 * 13 11 9 17 17 C 1.47474 * 87.83457 * 27.00875 * 7 6 4 18 18 H 1.09001 * 109.47126 * 179.97438 * 1 2 3 19 19 H 1.08995 * 109.46779 * 299.99350 * 1 2 3 20 20 H 1.09002 * 109.47374 * 60.00027 * 1 2 3 21 21 H 1.08994 * 109.47292 * 60.00024 * 3 2 1 22 22 H 1.09007 * 109.47287 * 300.00221 * 3 2 1 23 23 H 0.96706 * 113.99595 * 46.92515 * 5 4 3 24 24 H 1.09000 * 113.48168 * 105.56309 * 6 4 3 25 25 H 1.08999 * 113.47579 * 335.09413 * 6 4 3 26 26 H 1.08998 * 109.47140 * 289.99304 * 8 7 6 27 27 H 1.08997 * 109.47636 * 49.99763 * 8 7 6 28 28 H 0.96997 * 119.99999 * 179.97438 * 12 11 9 29 29 H 1.09008 * 113.47654 * 87.75975 * 17 7 6 30 30 H 1.09003 * 113.47610 * 218.16168 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 8 4.0305 0.2466 0.9571 6 6 4.2726 2.5311 -0.0001 7 7 5.2323 1.9454 -0.9546 8 6 5.5801 2.9078 -2.0087 9 6 6.7345 2.3726 -2.8164 10 1 7.1667 1.4138 -2.5709 11 6 7.2387 3.1071 -3.8686 12 7 6.7120 4.2744 -4.1678 13 14 8.6700 2.4442 -4.8693 14 1 9.0778 1.1207 -4.3332 15 1 8.2566 2.2981 -6.2880 16 1 9.8140 3.3870 -4.7816 17 6 4.1542 1.0423 -1.3983 18 1 -0.3633 -1.0277 -0.0005 19 1 -0.3633 0.5137 0.8900 20 1 -0.3634 0.5138 -0.8900 21 1 1.6887 1.8463 0.8899 22 1 1.6886 1.8464 -0.8900 23 1 3.5644 -0.6007 0.9549 24 1 4.7168 2.7827 0.9630 25 1 3.6856 3.3477 -0.4204 26 1 4.7199 3.0591 -2.6607 27 1 5.8635 3.8573 -1.5547 28 1 7.0670 4.7913 -4.9078 29 1 3.5355 1.4616 -2.1919 30 1 4.4981 0.0322 -1.6212 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000384042703.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:09 Heat of formation + Delta-G solvation = -54.605343 kcal Electronic energy + Delta-G solvation = -13165.833158 eV Core-core repulsion = 10769.826750 eV Total energy + Delta-G solvation = -2396.006407 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 201.115 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.94355 -37.52932 -35.08814 -32.76757 -29.96154 -27.77149 -25.99729 -25.40869 -23.87456 -20.88388 -19.46535 -16.83496 -16.52004 -16.23643 -15.92395 -15.22629 -14.49948 -14.40073 -13.69335 -13.43790 -12.77168 -12.58904 -12.13302 -11.90977 -11.59543 -11.49055 -10.99963 -10.69845 -10.44360 -10.22162 -9.88402 -9.71573 -9.28820 -9.16790 -8.41950 -7.80677 -6.02214 -4.02806 3.32891 3.39864 3.46708 3.58999 4.26167 4.45155 4.79463 4.84706 5.10410 5.18559 5.32225 5.33419 5.43350 5.48991 5.54011 5.91357 5.97248 6.19645 6.27260 6.46297 6.67962 6.99171 7.16947 7.67371 7.88454 8.00348 8.13205 8.48489 9.05558 9.61365 11.09126 Molecular weight = 201.12amu Principal moments of inertia in cm(-1) A = 0.061024 B = 0.007122 C = 0.007060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.724009 B = 3930.300457 C = 3965.040598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.392 6.392 3 C 0.045 3.955 4 C 0.103 3.897 5 O -0.525 6.525 6 C 0.010 3.990 7 N -0.454 5.454 8 C 0.155 3.845 9 C -0.501 4.501 10 H 0.064 0.936 11 C 0.053 3.947 12 N -0.902 5.902 13 Si 0.900 3.100 14 H -0.271 1.271 15 H -0.285 1.285 16 H -0.284 1.284 17 C -0.010 4.010 18 H 0.085 0.915 19 H 0.040 0.960 20 H 0.041 0.959 21 H 0.056 0.944 22 H 0.061 0.939 23 H 0.378 0.622 24 H 0.085 0.915 25 H 0.072 0.928 26 H 0.003 0.997 27 H 0.030 0.970 28 H 0.260 0.740 29 H 0.068 0.932 30 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.947 -5.630 7.037 14.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.311 6.311 3 C -0.032 4.032 4 C 0.061 3.939 5 O -0.330 6.330 6 C -0.119 4.119 7 N -0.177 5.177 8 C 0.029 3.971 9 C -0.540 4.540 10 H 0.083 0.917 11 C -0.148 4.148 12 N -0.542 5.542 13 Si 0.727 3.273 14 H -0.196 1.196 15 H -0.211 1.211 16 H -0.210 1.210 17 C -0.139 4.139 18 H 0.104 0.896 19 H 0.058 0.942 20 H 0.060 0.940 21 H 0.074 0.926 22 H 0.079 0.921 23 H 0.226 0.774 24 H 0.103 0.897 25 H 0.090 0.910 26 H 0.021 0.979 27 H 0.048 0.952 28 H 0.070 0.930 29 H 0.086 0.914 30 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -10.720 -5.397 7.244 14.018 hybrid contribution -0.617 0.066 -1.217 1.366 sum -11.337 -5.330 6.027 13.902 Atomic orbital electron populations 1.22733 0.80921 1.02671 0.99988 1.87776 1.19867 1.27997 1.95450 1.23214 0.94040 0.84981 1.00965 1.22429 0.88209 0.92595 0.90700 1.86485 1.61417 1.27328 1.57783 1.23886 0.94530 0.93232 1.00254 1.69042 1.23394 1.13107 1.12110 1.20326 0.96561 0.91452 0.88744 1.21151 1.15207 1.05015 1.12637 0.91734 1.25010 0.97408 0.94944 0.97436 1.69964 1.42043 1.12500 1.29705 0.86407 0.82102 0.79120 0.79633 1.19577 1.21093 1.20977 1.24410 0.93872 1.00750 0.94913 0.89636 0.94151 0.94001 0.92559 0.92056 0.77406 0.89683 0.91013 0.97922 0.95208 0.92997 0.91443 0.90130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 101.05 1.11 1.42 16 2 O -0.39 -5.06 9.85 -48.02 -0.47 -5.53 16 3 C 0.05 0.61 5.68 37.16 0.21 0.82 16 4 C 0.10 1.73 1.82 -90.09 -0.16 1.57 16 5 O -0.53 -8.96 13.55 -48.02 -0.65 -9.61 16 6 C 0.01 0.20 7.11 -7.55 -0.05 0.14 16 7 N -0.45 -10.56 6.32 -246.08 -1.55 -12.12 16 8 C 0.16 4.18 4.57 -4.97 -0.02 4.16 16 9 C -0.50 -14.78 9.39 -34.44 -0.32 -15.10 16 10 H 0.06 1.92 7.81 -52.49 -0.41 1.51 16 11 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 12 N -0.90 -27.26 13.29 55.43 0.74 -26.53 16 13 Si 0.90 22.24 29.54 -169.99 -5.02 17.22 16 14 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 15 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 16 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 17 C -0.01 -0.19 7.13 -7.55 -0.05 -0.25 16 18 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 19 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 20 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 21 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 22 H 0.06 0.79 7.90 -51.93 -0.41 0.38 16 23 H 0.38 5.14 8.24 45.56 0.38 5.51 16 24 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 25 H 0.07 1.25 7.87 -51.93 -0.41 0.84 16 26 H 0.00 0.08 7.30 -51.93 -0.38 -0.30 16 27 H 0.03 0.85 8.08 -51.93 -0.42 0.43 16 28 H 0.26 7.39 8.31 -40.82 -0.34 7.06 16 29 H 0.07 1.32 7.21 -51.92 -0.37 0.95 16 30 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 LS Contribution 257.60 15.07 3.88 3.88 Total: -1.00 -32.53 257.60 -6.17 -38.70 By element: Atomic # 1 Polarization: 3.48 SS G_CDS: -3.70 Total: -0.22 kcal Atomic # 6 Polarization: -6.40 SS G_CDS: 0.61 Total: -5.80 kcal Atomic # 7 Polarization: -37.82 SS G_CDS: -0.82 Total: -38.64 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: -1.12 Total: -15.15 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -32.53 -6.17 -38.70 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384042703.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.902 kcal (2) G-P(sol) polarization free energy of solvation -32.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds