Wall clock time and date at job start Mon Mar 30 2020 02:51:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42896 * 114.00043 * 2 1 4 4 C 1.52998 * 109.47316 * 180.02562 * 3 2 1 5 5 O 1.42905 * 113.38079 * 313.07999 * 4 3 2 6 6 C 1.53506 * 114.17302 * 180.02562 * 4 3 2 7 7 N 1.47486 * 87.93221 * 220.32775 * 6 4 3 8 8 C 1.46902 * 110.99695 * 138.70374 * 7 6 4 9 9 C 1.50706 * 109.46862 * 170.00231 * 8 7 6 10 10 H 1.08001 * 119.99675 * 359.97438 * 9 8 7 11 11 C 1.37873 * 119.99817 * 179.97438 * 9 8 7 12 12 N 1.31511 * 120.00230 * 359.97438 * 11 9 8 13 13 Si 1.86808 * 119.99759 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47126 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.47300 * 120.00218 * 13 11 9 16 16 H 1.48505 * 109.46896 * 240.00046 * 13 11 9 17 17 C 1.47474 * 87.83457 * 27.00875 * 7 6 4 18 18 H 1.09001 * 109.47126 * 179.97438 * 1 2 3 19 19 H 1.08995 * 109.46779 * 299.99350 * 1 2 3 20 20 H 1.09002 * 109.47374 * 60.00027 * 1 2 3 21 21 H 1.08994 * 109.47292 * 60.00024 * 3 2 1 22 22 H 1.09007 * 109.47287 * 300.00221 * 3 2 1 23 23 H 0.96706 * 113.99595 * 46.92515 * 5 4 3 24 24 H 1.09000 * 113.48168 * 105.56309 * 6 4 3 25 25 H 1.08999 * 113.47579 * 335.09413 * 6 4 3 26 26 H 1.08998 * 109.47140 * 289.99304 * 8 7 6 27 27 H 1.08997 * 109.47636 * 49.99763 * 8 7 6 28 28 H 0.96997 * 119.99999 * 179.97438 * 12 11 9 29 29 H 1.09008 * 113.47654 * 87.75975 * 17 7 6 30 30 H 1.09003 * 113.47610 * 218.16168 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 8 4.0305 0.2466 0.9571 6 6 4.2726 2.5311 -0.0001 7 7 5.2323 1.9454 -0.9546 8 6 5.5801 2.9078 -2.0087 9 6 6.7345 2.3726 -2.8164 10 1 7.1667 1.4138 -2.5709 11 6 7.2387 3.1071 -3.8686 12 7 6.7120 4.2744 -4.1678 13 14 8.6700 2.4442 -4.8693 14 1 9.0778 1.1207 -4.3332 15 1 8.2566 2.2981 -6.2880 16 1 9.8140 3.3870 -4.7816 17 6 4.1542 1.0423 -1.3983 18 1 -0.3633 -1.0277 -0.0005 19 1 -0.3633 0.5137 0.8900 20 1 -0.3634 0.5138 -0.8900 21 1 1.6887 1.8463 0.8899 22 1 1.6886 1.8464 -0.8900 23 1 3.5644 -0.6007 0.9549 24 1 4.7168 2.7827 0.9630 25 1 3.6856 3.3477 -0.4204 26 1 4.7199 3.0591 -2.6607 27 1 5.8635 3.8573 -1.5547 28 1 7.0670 4.7913 -4.9078 29 1 3.5355 1.4616 -2.1919 30 1 4.4981 0.0322 -1.6212 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000384042703.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:09 Heat of formation + Delta-G solvation = -82.199012 kcal Electronic energy + Delta-G solvation = -13167.029709 eV Core-core repulsion = 10769.826750 eV Total energy + Delta-G solvation = -2397.202958 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 201.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.44428 -38.57242 -36.54583 -34.91862 -31.57550 -29.24780 -27.16816 -26.97707 -25.57061 -22.69479 -20.92750 -18.58264 -18.01109 -17.49260 -17.12333 -16.73696 -16.16213 -15.99837 -15.15517 -14.85637 -14.35567 -13.98493 -13.86111 -13.52126 -13.05801 -12.87097 -12.54158 -12.32412 -12.21133 -12.18736 -11.44528 -11.35802 -10.80974 -10.64615 -10.59109 -9.61713 -8.25489 -6.35645 1.38295 1.39178 1.53688 2.37969 2.60996 2.89761 3.06676 3.34919 3.50389 3.94183 4.19697 4.33984 4.43617 4.52027 4.56949 4.59718 4.66242 4.67793 4.87164 4.89483 4.97902 5.05075 5.55720 5.75664 6.05805 6.10624 6.43292 6.78180 6.83936 7.34029 8.85942 Molecular weight = 201.12amu Principal moments of inertia in cm(-1) A = 0.061024 B = 0.007122 C = 0.007060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.724009 B = 3930.300457 C = 3965.040598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.409 6.409 3 C 0.055 3.945 4 C 0.125 3.875 5 O -0.539 6.539 6 C 0.007 3.993 7 N -0.484 5.484 8 C 0.171 3.829 9 C -0.529 4.529 10 H 0.053 0.947 11 C 0.003 3.997 12 N -0.933 5.933 13 Si 0.971 3.029 14 H -0.268 1.268 15 H -0.273 1.273 16 H -0.275 1.275 17 C -0.015 4.015 18 H 0.101 0.899 19 H 0.054 0.946 20 H 0.047 0.953 21 H 0.077 0.923 22 H 0.067 0.933 23 H 0.394 0.606 24 H 0.088 0.912 25 H 0.086 0.914 26 H -0.013 1.013 27 H 0.004 0.996 28 H 0.267 0.733 29 H 0.068 0.932 30 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.661 -6.350 7.219 15.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.329 6.329 3 C -0.022 4.022 4 C 0.082 3.918 5 O -0.346 6.346 6 C -0.122 4.122 7 N -0.207 5.207 8 C 0.044 3.956 9 C -0.567 4.567 10 H 0.071 0.929 11 C -0.195 4.195 12 N -0.573 5.573 13 Si 0.796 3.204 14 H -0.193 1.193 15 H -0.199 1.199 16 H -0.200 1.200 17 C -0.145 4.145 18 H 0.120 0.880 19 H 0.073 0.927 20 H 0.066 0.934 21 H 0.095 0.905 22 H 0.085 0.915 23 H 0.244 0.756 24 H 0.106 0.894 25 H 0.104 0.896 26 H 0.004 0.996 27 H 0.022 0.978 28 H 0.075 0.925 29 H 0.086 0.914 30 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -11.459 -6.134 7.441 14.977 hybrid contribution -0.449 0.258 -1.226 1.331 sum -11.908 -5.876 6.216 14.661 Atomic orbital electron populations 1.22968 0.78815 1.04160 1.00985 1.87740 1.22058 1.27439 1.95650 1.23000 0.91191 0.85718 1.02287 1.22132 0.90479 0.90967 0.88192 1.86444 1.62357 1.28369 1.57442 1.23954 0.94095 0.94924 0.99200 1.68945 1.26327 1.13431 1.11966 1.19998 0.95275 0.91201 0.89125 1.21431 1.16479 1.04937 1.13840 0.92854 1.25916 1.00143 0.95076 0.98372 1.70063 1.43385 1.13551 1.30297 0.85305 0.78492 0.78522 0.78119 1.19270 1.19857 1.20005 1.24471 0.93295 0.99456 0.97254 0.88013 0.92709 0.93423 0.90454 0.91483 0.75607 0.89360 0.89616 0.99570 0.97750 0.92459 0.91421 0.90914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 113.37 1.25 1.66 16 2 O -0.41 -9.51 9.85 -136.75 -1.35 -10.85 16 3 C 0.06 1.35 5.68 71.98 0.41 1.76 16 4 C 0.12 4.03 1.82 -10.45 -0.02 4.01 16 5 O -0.54 -17.55 13.55 -136.75 -1.85 -19.41 16 6 C 0.01 0.27 7.11 83.57 0.59 0.87 16 7 N -0.48 -22.86 6.32 -932.85 -5.89 -28.75 16 8 C 0.17 9.48 4.57 85.56 0.39 9.87 16 9 C -0.53 -31.79 9.39 25.60 0.24 -31.55 16 10 H 0.05 3.25 7.81 -2.91 -0.02 3.22 16 11 C 0.00 0.18 5.46 84.65 0.46 0.64 16 12 N -0.93 -56.85 13.29 21.45 0.28 -56.56 16 13 Si 0.97 45.66 29.54 68.60 2.03 47.69 16 14 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 15 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 16 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 17 C -0.02 -0.61 7.13 83.57 0.60 -0.01 16 18 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 19 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 20 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 21 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 22 H 0.07 1.57 7.90 -2.38 -0.02 1.55 16 23 H 0.39 9.96 8.24 -74.05 -0.61 9.35 16 24 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 25 H 0.09 2.93 7.87 -2.39 -0.02 2.91 16 26 H -0.01 -0.77 7.30 -2.39 -0.02 -0.79 16 27 H 0.00 0.26 8.08 -2.39 -0.02 0.24 16 28 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 29 H 0.07 2.67 7.21 -2.38 -0.02 2.66 16 30 H 0.07 2.95 8.14 -2.39 -0.02 2.93 16 Total: -1.00 -69.55 257.60 -2.35 -71.90 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: 0.51 Total: 8.74 kcal Atomic # 6 Polarization: -16.67 SS G_CDS: 3.92 Total: -12.75 kcal Atomic # 7 Polarization: -79.70 SS G_CDS: -5.61 Total: -85.31 kcal Atomic # 8 Polarization: -27.06 SS G_CDS: -3.20 Total: -30.26 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Total: -69.55 -2.35 -71.90 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384042703.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.303 kcal (2) G-P(sol) polarization free energy of solvation -69.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds