Wall clock time and date at job start Mon Mar 30 2020 02:30:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99575 * 2 1 4 4 H 1.48501 * 109.47197 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47311 * 300.00141 * 3 2 1 6 6 H 1.48506 * 109.47247 * 59.99876 * 3 2 1 7 7 C 1.37868 * 120.00529 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00701 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99981 * 0.02562 * 7 2 1 10 10 O 1.42901 * 109.47184 * 179.97438 * 9 7 2 11 11 C 1.42901 * 113.99796 * 179.97438 * 10 9 7 12 12 C 1.53005 * 109.46864 * 179.97438 * 11 10 9 13 13 N 1.46895 * 109.47163 * 65.00336 * 12 11 10 14 14 C 1.47796 * 111.00337 * 174.99995 * 13 12 11 15 15 C 1.54587 * 105.24463 * 123.47848 * 14 13 12 16 16 C 1.55005 * 102.46516 * 21.06593 * 15 14 13 17 17 O 1.44568 * 102.67233 * 323.51164 * 16 15 14 18 18 H 0.96998 * 120.00400 * 0.02562 * 1 2 3 19 19 H 1.09002 * 109.47144 * 59.99352 * 9 7 2 20 20 H 1.08997 * 109.47299 * 299.99549 * 9 7 2 21 21 H 1.09000 * 109.47173 * 60.00345 * 11 10 9 22 22 H 1.09004 * 109.47163 * 299.99991 * 11 10 9 23 23 H 1.08995 * 109.47252 * 305.00063 * 12 11 10 24 24 H 1.09007 * 109.46825 * 184.99741 * 12 11 10 25 25 H 1.09002 * 110.28689 * 242.42175 * 14 13 12 26 26 H 1.08998 * 110.28542 * 4.52986 * 14 13 12 27 27 H 1.09004 * 110.80660 * 139.31335 * 15 14 13 28 28 H 1.09001 * 110.80727 * 262.81833 * 15 14 13 29 29 H 1.09001 * 110.77222 * 81.81265 * 16 15 14 30 30 H 1.09004 * 110.76875 * 205.02539 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3466 0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 8 2.1799 -3.5852 0.0005 11 6 1.5654 -4.8753 0.0011 12 6 2.6485 -5.9560 0.0004 13 7 3.4094 -5.8875 1.2551 14 6 4.3872 -6.9924 1.3427 15 6 5.7581 -6.3070 1.5436 16 6 5.3582 -4.9125 2.0896 17 8 4.1480 -4.6194 1.3550 18 1 -0.4850 0.8400 -0.0004 19 1 0.6248 -2.5570 -0.8896 20 1 0.6243 -2.5567 0.8903 21 1 0.9450 -4.9827 -0.8887 22 1 0.9456 -4.9821 0.8914 23 1 3.3214 -5.7955 -0.8419 24 1 2.1824 -6.9374 -0.0887 25 1 4.1571 -7.6341 2.1932 26 1 4.3860 -7.5721 0.4196 27 1 6.3596 -6.8503 2.2724 28 1 6.2874 -6.2143 0.5952 29 1 5.1589 -4.9591 3.1602 30 1 6.1326 -4.1763 1.8739 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385366647.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:11 Heat of formation + Delta-G solvation = -41.422098 kcal Electronic energy + Delta-G solvation = -13190.655667 eV Core-core repulsion = 10795.220928 eV Total energy + Delta-G solvation = -2395.434739 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 201.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.56888 -36.45523 -33.20389 -32.41111 -31.47953 -28.32367 -26.57364 -23.60912 -22.16778 -21.61841 -21.14849 -16.46242 -16.21903 -16.01992 -15.61769 -14.66045 -14.37206 -14.08443 -13.54219 -13.34710 -12.87594 -12.37879 -12.21465 -11.78583 -11.43381 -11.17379 -11.09035 -10.71328 -10.66033 -10.40728 -10.01618 -9.86850 -8.94146 -8.67935 -8.30612 -7.98877 -6.00022 -3.99878 3.21489 3.35603 3.41453 3.48867 4.39806 4.44666 4.68590 4.81084 5.02368 5.16717 5.36390 5.41546 5.52733 5.59445 5.71757 5.78408 5.89170 6.01415 6.12417 6.18434 6.37385 6.85256 7.12940 7.25829 7.59012 7.92693 8.30407 8.76654 9.16047 9.64361 11.12014 Molecular weight = 201.12amu Principal moments of inertia in cm(-1) A = 0.048135 B = 0.008071 C = 0.007100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.556735 B = 3468.343132 C = 3942.620151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.053 3.947 3 Si 0.906 3.094 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.505 4.505 8 H 0.066 0.934 9 C 0.195 3.805 10 O -0.378 6.378 11 C 0.070 3.930 12 C 0.036 3.964 13 N -0.343 5.343 14 C -0.001 4.001 15 C -0.161 4.161 16 C 0.030 3.970 17 O -0.195 6.195 18 H 0.262 0.738 19 H 0.000 1.000 20 H 0.004 0.996 21 H 0.039 0.961 22 H 0.044 0.956 23 H 0.053 0.947 24 H 0.095 0.905 25 H 0.092 0.908 26 H 0.062 0.938 27 H 0.082 0.918 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.401 -13.421 2.170 15.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.147 4.147 3 Si 0.733 3.267 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.543 4.543 8 H 0.085 0.915 9 C 0.120 3.880 10 O -0.297 6.297 11 C -0.009 4.009 12 C -0.092 4.092 13 N -0.109 5.109 14 C -0.129 4.129 15 C -0.200 4.200 16 C -0.048 4.048 17 O -0.201 6.201 18 H 0.071 0.929 19 H 0.018 0.982 20 H 0.022 0.978 21 H 0.057 0.943 22 H 0.063 0.937 23 H 0.071 0.929 24 H 0.113 0.887 25 H 0.110 0.890 26 H 0.081 0.919 27 H 0.101 0.899 28 H 0.093 0.907 29 H 0.082 0.918 30 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 8.006 -13.070 2.479 15.527 hybrid contribution 0.701 0.622 -0.661 1.146 sum 8.707 -12.449 1.818 15.300 Atomic orbital electron populations 1.69980 1.06069 1.26806 1.51317 1.24944 0.94948 0.99337 0.95472 0.86312 0.80055 0.82803 0.77497 1.19543 1.20972 1.20910 1.21113 0.94100 0.89391 1.49695 0.91550 1.20149 0.88844 0.83960 0.95005 1.87978 1.34441 1.12276 1.95020 1.22124 0.93630 0.85959 0.99147 1.22654 0.96548 0.99034 0.91010 1.70343 1.14942 0.92072 1.33506 1.23649 0.91962 0.94972 1.02362 1.23474 0.97409 0.96842 1.02229 1.23638 0.88737 0.95390 0.97084 1.92191 1.33096 1.18717 1.76064 0.92883 0.98192 0.97840 0.94317 0.93743 0.92900 0.88665 0.89004 0.91929 0.89941 0.90744 0.91787 0.88783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.04 13.29 55.43 0.74 -27.30 16 2 C 0.05 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.91 22.69 29.54 -169.99 -5.02 17.67 16 4 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.50 -15.65 9.43 -34.44 -0.32 -15.98 16 8 H 0.07 2.07 7.81 -52.49 -0.41 1.66 16 9 C 0.19 5.69 5.69 36.01 0.20 5.89 16 10 O -0.38 -9.87 8.72 -55.22 -0.48 -10.35 16 11 C 0.07 1.41 6.26 37.16 0.23 1.64 16 12 C 0.04 0.59 5.47 -3.82 -0.02 0.56 16 13 N -0.34 -5.78 5.81 -112.18 -0.65 -6.44 16 14 C 0.00 -0.01 7.08 -2.50 -0.02 -0.03 16 15 C -0.16 -1.78 7.12 -24.84 -0.18 -1.96 16 16 C 0.03 0.44 7.94 38.22 0.30 0.74 16 17 O -0.19 -3.92 10.35 -34.36 -0.36 -4.28 16 18 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 19 H 0.00 0.01 8.14 -51.93 -0.42 -0.41 16 20 H 0.00 0.11 8.14 -51.93 -0.42 -0.31 16 21 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 22 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 23 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 24 H 0.10 1.17 8.13 -51.92 -0.42 0.75 16 25 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.06 0.65 7.61 -51.93 -0.40 0.26 16 27 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 256.77 15.07 3.87 3.87 Total: -1.00 -34.57 256.77 -6.39 -40.96 By element: Atomic # 1 Polarization: -1.93 SS G_CDS: -4.59 Total: -6.52 kcal Atomic # 6 Polarization: -7.72 SS G_CDS: 0.10 Total: -7.62 kcal Atomic # 7 Polarization: -33.82 SS G_CDS: 0.08 Total: -33.73 kcal Atomic # 8 Polarization: -13.79 SS G_CDS: -0.84 Total: -14.63 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.67 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -34.57 -6.39 -40.96 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385366647.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.466 kcal (2) G-P(sol) polarization free energy of solvation -34.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds