Wall clock time and date at job start Mon Mar 30 2020 02:30:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99575 * 2 1 4 4 H 1.48501 * 109.47197 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47311 * 300.00141 * 3 2 1 6 6 H 1.48506 * 109.47247 * 59.99876 * 3 2 1 7 7 C 1.37868 * 120.00529 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00701 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99981 * 0.02562 * 7 2 1 10 10 O 1.42901 * 109.47184 * 179.97438 * 9 7 2 11 11 C 1.42901 * 113.99796 * 179.97438 * 10 9 7 12 12 C 1.53005 * 109.46864 * 179.97438 * 11 10 9 13 13 N 1.46895 * 109.47163 * 65.00336 * 12 11 10 14 14 C 1.47796 * 111.00337 * 174.99995 * 13 12 11 15 15 C 1.54587 * 105.24463 * 123.47848 * 14 13 12 16 16 C 1.55005 * 102.46516 * 21.06593 * 15 14 13 17 17 O 1.44568 * 102.67233 * 323.51164 * 16 15 14 18 18 H 0.96998 * 120.00400 * 0.02562 * 1 2 3 19 19 H 1.09002 * 109.47144 * 59.99352 * 9 7 2 20 20 H 1.08997 * 109.47299 * 299.99549 * 9 7 2 21 21 H 1.09000 * 109.47173 * 60.00345 * 11 10 9 22 22 H 1.09004 * 109.47163 * 299.99991 * 11 10 9 23 23 H 1.08995 * 109.47252 * 305.00063 * 12 11 10 24 24 H 1.09007 * 109.46825 * 184.99741 * 12 11 10 25 25 H 1.09002 * 110.28689 * 242.42175 * 14 13 12 26 26 H 1.08998 * 110.28542 * 4.52986 * 14 13 12 27 27 H 1.09004 * 110.80660 * 139.31335 * 15 14 13 28 28 H 1.09001 * 110.80727 * 262.81833 * 15 14 13 29 29 H 1.09001 * 110.77222 * 81.81265 * 16 15 14 30 30 H 1.09004 * 110.76875 * 205.02539 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3466 0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 8 2.1799 -3.5852 0.0005 11 6 1.5654 -4.8753 0.0011 12 6 2.6485 -5.9560 0.0004 13 7 3.4094 -5.8875 1.2551 14 6 4.3872 -6.9924 1.3427 15 6 5.7581 -6.3070 1.5436 16 6 5.3582 -4.9125 2.0896 17 8 4.1480 -4.6194 1.3550 18 1 -0.4850 0.8400 -0.0004 19 1 0.6248 -2.5570 -0.8896 20 1 0.6243 -2.5567 0.8903 21 1 0.9450 -4.9827 -0.8887 22 1 0.9456 -4.9821 0.8914 23 1 3.3214 -5.7955 -0.8419 24 1 2.1824 -6.9374 -0.0887 25 1 4.1571 -7.6341 2.1932 26 1 4.3860 -7.5721 0.4196 27 1 6.3596 -6.8503 2.2724 28 1 6.2874 -6.2143 0.5952 29 1 5.1589 -4.9591 3.1602 30 1 6.1326 -4.1763 1.8739 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385366647.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:11 Heat of formation + Delta-G solvation = -66.529382 kcal Electronic energy + Delta-G solvation = -13191.744400 eV Core-core repulsion = 10795.220928 eV Total energy + Delta-G solvation = -2396.523472 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 201.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.75626 -38.35694 -35.08395 -34.17500 -32.62859 -30.01821 -28.52507 -24.90578 -24.39055 -22.70359 -22.43234 -18.64144 -17.53585 -17.45644 -17.23620 -16.45877 -16.06823 -15.64840 -15.12151 -14.66316 -14.29902 -13.94799 -13.61160 -13.21615 -13.04973 -12.77534 -12.66825 -12.54742 -12.27221 -12.02433 -11.70178 -11.24095 -11.13857 -10.85483 -10.14911 -9.52356 -8.31424 -6.43098 1.37800 1.40398 1.55142 2.00561 2.35418 3.01631 3.27549 3.33588 3.75233 3.95611 4.13819 4.28966 4.31978 4.51382 4.56886 4.67157 4.71545 4.79621 4.81278 4.91987 4.95607 5.11825 5.20100 5.56156 5.63370 5.97277 5.99901 6.58256 6.88486 7.29154 8.81671 Molecular weight = 201.12amu Principal moments of inertia in cm(-1) A = 0.048135 B = 0.008071 C = 0.007100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.556735 B = 3468.343132 C = 3942.620151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.004 3.996 3 Si 0.985 3.015 4 H -0.266 1.266 5 H -0.268 1.268 6 H -0.270 1.270 7 C -0.542 4.542 8 H 0.056 0.944 9 C 0.210 3.790 10 O -0.393 6.393 11 C 0.056 3.944 12 C 0.043 3.957 13 N -0.359 5.359 14 C -0.004 4.004 15 C -0.148 4.148 16 C 0.018 3.982 17 O -0.257 6.257 18 H 0.271 0.729 19 H -0.016 1.016 20 H -0.021 1.021 21 H 0.052 0.948 22 H 0.039 0.961 23 H 0.048 0.952 24 H 0.143 0.857 25 H 0.113 0.887 26 H 0.084 0.916 27 H 0.115 0.885 28 H 0.076 0.924 29 H 0.067 0.933 30 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.606 -14.108 2.199 17.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.194 4.194 3 Si 0.807 3.193 4 H -0.191 1.191 5 H -0.193 1.193 6 H -0.195 1.195 7 C -0.580 4.580 8 H 0.075 0.925 9 C 0.135 3.865 10 O -0.313 6.313 11 C -0.021 4.021 12 C -0.085 4.085 13 N -0.127 5.127 14 C -0.131 4.131 15 C -0.186 4.186 16 C -0.060 4.060 17 O -0.262 6.262 18 H 0.080 0.920 19 H 0.001 0.999 20 H -0.004 1.004 21 H 0.070 0.930 22 H 0.057 0.943 23 H 0.067 0.933 24 H 0.160 0.840 25 H 0.132 0.868 26 H 0.102 0.898 27 H 0.134 0.866 28 H 0.095 0.905 29 H 0.085 0.915 30 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 9.221 -13.778 2.512 16.768 hybrid contribution 0.286 0.716 -0.643 1.004 sum 9.507 -13.061 1.869 16.262 Atomic orbital electron populations 1.70082 1.07750 1.28542 1.50856 1.25987 0.96008 1.03412 0.93974 0.85123 0.78520 0.77216 0.78432 1.19064 1.19307 1.19490 1.21384 0.93860 0.90985 1.51775 0.92546 1.19762 0.88661 0.85172 0.92907 1.87953 1.34444 1.13835 1.95022 1.22517 0.95563 0.84525 0.99491 1.22714 0.95439 0.99354 0.90982 1.70245 1.16655 0.92170 1.33653 1.23843 0.91186 0.93702 1.04390 1.23443 0.97410 0.94731 1.03066 1.23865 0.87396 0.97718 0.97047 1.92134 1.35295 1.21779 1.76994 0.92040 0.99860 1.00360 0.92978 0.94288 0.93330 0.83988 0.86850 0.89803 0.86648 0.90532 0.91468 0.88480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.55 13.29 21.44 0.28 -58.27 16 2 C 0.00 0.25 5.46 84.65 0.46 0.71 16 3 Si 0.98 46.53 29.54 68.60 2.03 48.56 16 4 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 5 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 6 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 7 C -0.54 -34.61 9.43 25.60 0.24 -34.36 16 8 H 0.06 3.62 7.81 -2.91 -0.02 3.60 16 9 C 0.21 12.80 5.69 71.24 0.41 13.21 16 10 O -0.39 -21.24 8.72 -129.87 -1.13 -22.38 16 11 C 0.06 2.30 6.26 71.98 0.45 2.76 16 12 C 0.04 1.35 5.47 86.31 0.47 1.82 16 13 N -0.36 -11.70 5.81 -508.84 -2.96 -14.66 16 14 C 0.00 -0.08 7.08 86.67 0.61 0.54 16 15 C -0.15 -2.90 7.12 31.82 0.23 -2.68 16 16 C 0.02 0.51 7.94 72.67 0.58 1.08 16 17 O -0.26 -10.51 10.35 -33.14 -0.34 -10.86 16 18 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 19 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 20 H -0.02 -1.37 8.14 -2.39 -0.02 -1.39 16 21 H 0.05 1.95 8.14 -2.39 -0.02 1.94 16 22 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 23 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 24 H 0.14 3.03 8.13 -2.38 -0.02 3.01 16 25 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 26 H 0.08 1.42 7.61 -2.39 -0.02 1.40 16 27 H 0.12 1.50 8.14 -2.38 -0.02 1.48 16 28 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 Total: -1.00 -76.65 256.77 2.42 -74.22 By element: Atomic # 1 Polarization: -0.80 SS G_CDS: 1.10 Total: 0.30 kcal Atomic # 6 Polarization: -20.37 SS G_CDS: 3.45 Total: -16.92 kcal Atomic # 7 Polarization: -70.25 SS G_CDS: -2.67 Total: -72.93 kcal Atomic # 8 Polarization: -31.76 SS G_CDS: -1.48 Total: -33.23 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 2.03 Total: 48.56 kcal Total: -76.65 2.42 -74.22 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385366647.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.695 kcal (2) G-P(sol) polarization free energy of solvation -76.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds