Wall clock time and date at job start Mon Mar 30 2020 02:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86795 * 120.00074 * 2 1 4 4 H 1.48497 * 109.47306 * 240.00325 * 3 2 1 5 5 H 1.48498 * 109.47382 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47182 * 120.00236 * 3 2 1 7 7 C 1.38812 * 119.99438 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99389 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00422 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99983 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.47092 * 324.99883 * 10 9 7 12 12 C 1.52997 * 109.47007 * 84.99832 * 10 9 7 13 13 O 1.42907 * 109.47171 * 64.99971 * 12 10 9 14 14 C 1.53000 * 109.47023 * 204.99625 * 10 9 7 15 15 H 1.09001 * 109.82040 * 180.69679 * 14 10 9 16 16 C 1.54388 * 109.82889 * 59.81686 * 14 10 9 17 17 C 1.55448 * 102.18463 * 219.17979 * 16 14 10 18 18 C 1.54945 * 100.98967 * 34.03859 * 17 16 14 19 19 O 1.43235 * 109.83322 * 301.59064 * 14 10 9 20 20 H 0.97001 * 120.00131 * 359.97438 * 1 2 3 21 21 H 0.96997 * 119.99743 * 0.02562 * 9 7 2 22 22 H 1.09002 * 109.47196 * 184.99891 * 12 10 9 23 23 H 1.09001 * 109.47630 * 304.99986 * 12 10 9 24 24 H 0.96695 * 114.00153 * 179.97438 * 13 12 10 25 25 H 1.08997 * 110.84710 * 337.31855 * 16 14 10 26 26 H 1.09003 * 110.84559 * 100.93660 * 16 14 10 27 27 H 1.09000 * 111.05843 * 276.12255 * 17 16 14 28 28 H 1.09000 * 111.18147 * 152.00572 * 17 16 14 29 29 H 1.09001 * 110.31041 * 204.68543 * 18 17 16 30 30 H 1.08999 * 110.31284 * 82.52043 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 1 2.9682 -3.5503 -0.5918 12 6 2.4230 -4.0362 1.4349 13 8 1.2292 -4.2895 2.1786 14 6 1.1802 -4.7519 -0.6110 15 1 1.7153 -5.7014 -0.6034 16 6 0.8030 -4.3750 -2.0599 17 6 -0.6763 -4.8446 -2.1465 18 6 -1.1602 -4.5648 -0.7014 19 8 -0.0353 -4.8729 0.1371 20 1 -0.4850 0.8400 0.0004 21 1 0.3555 -2.3880 -0.0005 22 1 3.0434 -4.9324 1.4275 23 1 2.9730 -3.2173 1.8985 24 1 1.3851 -4.5366 3.1004 25 1 0.8775 -3.2983 -2.2126 26 1 1.4249 -4.9133 -2.7752 27 1 -0.7368 -5.9071 -2.3823 28 1 -1.2360 -4.2517 -2.8699 29 1 -2.0042 -5.2085 -0.4537 30 1 -1.4379 -3.5166 -0.5916 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393354636.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:16 Heat of formation + Delta-G solvation = -83.271733 kcal Electronic energy + Delta-G solvation = -13873.489425 eV Core-core repulsion = 11476.239950 eV Total energy + Delta-G solvation = -2397.249475 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 201.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.99668 -36.05743 -33.99823 -31.63889 -31.24556 -28.73893 -26.58540 -23.72728 -22.13478 -20.98572 -19.32811 -17.49622 -16.29872 -15.89441 -15.47208 -14.53698 -14.05274 -13.54837 -13.23374 -13.10192 -12.61561 -12.29554 -11.54455 -11.42587 -11.07525 -10.83492 -10.81127 -10.56970 -10.34524 -10.14302 -9.99711 -9.59332 -9.12412 -8.82787 -8.57783 -6.84969 -5.69648 -2.96869 3.46054 3.50507 3.51643 4.51690 4.63392 5.07041 5.20227 5.34873 5.46213 5.61229 5.66695 5.79964 5.92149 6.09116 6.14275 6.22747 6.25944 6.37792 6.48249 6.51772 6.67047 6.79196 6.94014 7.71933 7.84200 8.48229 8.54627 9.60893 10.21914 10.59540 11.52846 Molecular weight = 201.12amu Principal moments of inertia in cm(-1) A = 0.036656 B = 0.012094 C = 0.010586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.670890 B = 2314.675319 C = 2644.383920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.013 4.013 3 Si 0.905 3.095 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.288 1.288 7 C -0.241 4.241 8 H 0.067 0.933 9 N -0.708 5.708 10 C 0.163 3.837 11 H 0.064 0.936 12 C 0.061 3.939 13 O -0.537 6.537 14 C 0.082 3.918 15 H 0.064 0.936 16 C -0.152 4.152 17 C -0.155 4.155 18 C 0.048 3.952 19 O -0.346 6.346 20 H 0.254 0.746 21 H 0.390 0.610 22 H 0.017 0.983 23 H 0.038 0.962 24 H 0.351 0.649 25 H 0.097 0.903 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.696 -9.900 -1.886 10.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.209 4.209 3 Si 0.736 3.264 4 H -0.214 1.214 5 H -0.218 1.218 6 H -0.214 1.214 7 C -0.372 4.372 8 H 0.085 0.915 9 N -0.349 5.349 10 C 0.052 3.948 11 H 0.082 0.918 12 C -0.020 4.020 13 O -0.338 6.338 14 C 0.024 3.976 15 H 0.082 0.918 16 C -0.189 4.189 17 C -0.192 4.192 18 C -0.029 4.029 19 O -0.264 6.264 20 H 0.064 0.936 21 H 0.225 0.775 22 H 0.035 0.965 23 H 0.056 0.944 24 H 0.194 0.806 25 H 0.116 0.884 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.094 0.906 29 H 0.089 0.911 30 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.507 -9.646 -2.277 10.025 hybrid contribution 0.588 0.915 0.391 1.156 sum 2.096 -8.731 -1.886 9.175 Atomic orbital electron populations 1.69669 1.05043 1.25554 1.57520 1.24712 0.95463 0.97489 1.03202 0.86302 0.78504 0.83839 0.77719 1.21385 1.21764 1.21441 1.19224 0.90842 0.84363 1.42780 0.91470 1.42257 1.06178 0.98789 1.87724 1.20750 0.94605 0.87524 0.91923 0.91792 1.22980 0.86734 0.96222 0.96081 1.86824 1.30892 1.91649 1.24403 1.22896 0.87557 0.97034 0.90151 0.91794 1.23232 0.95295 1.04098 0.96298 1.23235 0.96921 1.00792 0.98292 1.23339 0.90185 1.00718 0.88640 1.88602 1.12961 1.89824 1.35017 0.93567 0.77483 0.96476 0.94376 0.80636 0.88449 0.91460 0.91619 0.90630 0.91129 0.91685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.56 13.06 55.49 0.72 -27.84 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 3 Si 0.91 22.64 29.55 -169.99 -5.02 17.61 16 4 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 6 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 7 C -0.24 -6.77 9.93 -15.06 -0.15 -6.92 16 8 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 9 N -0.71 -18.31 4.11 -53.43 -0.22 -18.53 16 10 C 0.16 3.44 2.58 -67.93 -0.18 3.26 16 11 H 0.06 1.29 8.08 -51.93 -0.42 0.87 16 12 C 0.06 1.20 6.86 37.16 0.25 1.45 16 13 O -0.54 -10.98 11.45 -57.57 -0.66 -11.63 16 14 C 0.08 1.54 3.26 -26.00 -0.08 1.46 16 15 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 16 C -0.15 -2.59 6.44 -24.70 -0.16 -2.75 16 17 C -0.15 -2.38 7.16 -24.40 -0.17 -2.56 16 18 C 0.05 0.87 7.40 38.18 0.28 1.15 16 19 O -0.35 -7.07 8.50 -57.57 -0.49 -7.56 16 20 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 21 H 0.39 10.95 6.39 -40.82 -0.26 10.69 16 22 H 0.02 0.29 8.14 -51.93 -0.42 -0.14 16 23 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.35 5.44 9.12 45.56 0.42 5.86 16 25 H 0.10 1.98 7.17 -51.93 -0.37 1.60 16 26 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.06 1.33 7.53 -51.93 -0.39 0.94 16 LS Contribution 248.53 15.07 3.75 3.75 Total: -1.00 -32.27 248.53 -5.76 -38.03 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -3.53 Total: 11.54 kcal Atomic # 6 Polarization: -5.06 SS G_CDS: -0.30 Total: -5.36 kcal Atomic # 7 Polarization: -46.87 SS G_CDS: 0.51 Total: -46.36 kcal Atomic # 8 Polarization: -18.05 SS G_CDS: -1.15 Total: -19.19 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.61 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -32.27 -5.76 -38.03 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393354636.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.245 kcal (2) G-P(sol) polarization free energy of solvation -32.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds