Wall clock time and date at job start Mon Mar 30 2020 02:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86795 * 120.00074 * 2 1 4 4 H 1.48497 * 109.47306 * 240.00325 * 3 2 1 5 5 H 1.48498 * 109.47382 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47182 * 120.00236 * 3 2 1 7 7 C 1.38812 * 119.99438 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99389 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00422 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99983 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.47092 * 324.99883 * 10 9 7 12 12 C 1.52997 * 109.47007 * 84.99832 * 10 9 7 13 13 O 1.42907 * 109.47171 * 64.99971 * 12 10 9 14 14 C 1.53000 * 109.47023 * 204.99625 * 10 9 7 15 15 H 1.09001 * 109.82040 * 180.69679 * 14 10 9 16 16 C 1.54388 * 109.82889 * 59.81686 * 14 10 9 17 17 C 1.55448 * 102.18463 * 219.17979 * 16 14 10 18 18 C 1.54945 * 100.98967 * 34.03859 * 17 16 14 19 19 O 1.43235 * 109.83322 * 301.59064 * 14 10 9 20 20 H 0.97001 * 120.00131 * 359.97438 * 1 2 3 21 21 H 0.96997 * 119.99743 * 0.02562 * 9 7 2 22 22 H 1.09002 * 109.47196 * 184.99891 * 12 10 9 23 23 H 1.09001 * 109.47630 * 304.99986 * 12 10 9 24 24 H 0.96695 * 114.00153 * 179.97438 * 13 12 10 25 25 H 1.08997 * 110.84710 * 337.31855 * 16 14 10 26 26 H 1.09003 * 110.84559 * 100.93660 * 16 14 10 27 27 H 1.09000 * 111.05843 * 276.12255 * 17 16 14 28 28 H 1.09000 * 111.18147 * 152.00572 * 17 16 14 29 29 H 1.09001 * 110.31041 * 204.68543 * 18 17 16 30 30 H 1.08999 * 110.31284 * 82.52043 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 1 2.9682 -3.5503 -0.5918 12 6 2.4230 -4.0362 1.4349 13 8 1.2292 -4.2895 2.1786 14 6 1.1802 -4.7519 -0.6110 15 1 1.7153 -5.7014 -0.6034 16 6 0.8030 -4.3750 -2.0599 17 6 -0.6763 -4.8446 -2.1465 18 6 -1.1602 -4.5648 -0.7014 19 8 -0.0353 -4.8729 0.1371 20 1 -0.4850 0.8400 0.0004 21 1 0.3555 -2.3880 -0.0005 22 1 3.0434 -4.9324 1.4275 23 1 2.9730 -3.2173 1.8985 24 1 1.3851 -4.5366 3.1004 25 1 0.8775 -3.2983 -2.2126 26 1 1.4249 -4.9133 -2.7752 27 1 -0.7368 -5.9071 -2.3823 28 1 -1.2360 -4.2517 -2.8699 29 1 -2.0042 -5.2085 -0.4537 30 1 -1.4379 -3.5166 -0.5916 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393354636.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:16 Heat of formation + Delta-G solvation = -107.551959 kcal Electronic energy + Delta-G solvation = -13874.542295 eV Core-core repulsion = 11476.239950 eV Total energy + Delta-G solvation = -2398.302345 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 201.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.47311 -37.64726 -35.88119 -33.51277 -32.68366 -30.54158 -28.15238 -25.75322 -23.69005 -22.32797 -20.94513 -19.44081 -17.98988 -17.39168 -17.04804 -16.31388 -15.77160 -15.24382 -14.95290 -14.68809 -14.19867 -13.84685 -13.22287 -13.02139 -12.79751 -12.70882 -12.41715 -12.17886 -11.94212 -11.91047 -11.52240 -11.47308 -10.88452 -10.62744 -10.11574 -8.92266 -7.89143 -5.15922 1.46264 1.49586 1.55470 2.57799 3.11639 3.42979 3.69556 3.77259 3.92772 4.11937 4.12814 4.44688 4.47268 4.59970 4.67600 4.83477 4.91044 4.96911 5.00207 5.04050 5.15896 5.22812 5.46805 5.54528 6.31557 6.40265 7.19982 7.38649 8.18787 8.43519 9.34471 Molecular weight = 201.12amu Principal moments of inertia in cm(-1) A = 0.036656 B = 0.012094 C = 0.010586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.670890 B = 2314.675319 C = 2644.383920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.078 4.078 3 Si 0.972 3.028 4 H -0.276 1.276 5 H -0.299 1.299 6 H -0.281 1.281 7 C -0.239 4.239 8 H 0.076 0.924 9 N -0.719 5.719 10 C 0.148 3.852 11 H 0.073 0.927 12 C 0.066 3.934 13 O -0.561 6.561 14 C 0.081 3.919 15 H 0.095 0.905 16 C -0.149 4.149 17 C -0.142 4.142 18 C 0.043 3.957 19 O -0.367 6.367 20 H 0.248 0.752 21 H 0.375 0.625 22 H 0.057 0.943 23 H 0.019 0.981 24 H 0.371 0.629 25 H 0.057 0.943 26 H 0.100 0.900 27 H 0.098 0.902 28 H 0.081 0.919 29 H 0.095 0.905 30 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.825 -11.381 -2.400 11.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.270 4.270 3 Si 0.801 3.199 4 H -0.202 1.202 5 H -0.225 1.225 6 H -0.208 1.208 7 C -0.371 4.371 8 H 0.094 0.906 9 N -0.359 5.359 10 C 0.039 3.961 11 H 0.091 0.909 12 C -0.015 4.015 13 O -0.365 6.365 14 C 0.023 3.977 15 H 0.113 0.887 16 C -0.187 4.187 17 C -0.179 4.179 18 C -0.034 4.034 19 O -0.286 6.286 20 H 0.057 0.943 21 H 0.208 0.792 22 H 0.075 0.925 23 H 0.038 0.962 24 H 0.217 0.783 25 H 0.076 0.924 26 H 0.118 0.882 27 H 0.116 0.884 28 H 0.100 0.900 29 H 0.113 0.887 30 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 2.687 -11.171 -2.779 11.821 hybrid contribution 0.266 1.275 0.583 1.427 sum 2.953 -9.896 -2.196 10.558 Atomic orbital electron populations 1.69851 1.06668 1.25765 1.59801 1.25529 0.96291 1.00943 1.04270 0.85232 0.77117 0.79427 0.78095 1.20178 1.22497 1.20782 1.19657 0.91391 0.85431 1.40593 0.90610 1.42393 1.05628 1.00042 1.87863 1.21125 0.95119 0.86494 0.93376 0.90908 1.22841 0.86697 0.97314 0.94642 1.86770 1.31701 1.91802 1.26202 1.22991 0.87007 0.97297 0.90409 0.88704 1.23168 0.97197 1.02038 0.96295 1.23209 0.95457 1.02786 0.96478 1.23398 0.90586 0.98963 0.90478 1.88570 1.13922 1.89608 1.36509 0.94302 0.79219 0.92476 0.96247 0.78283 0.92399 0.88192 0.88375 0.90024 0.88688 0.95677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.34 13.06 21.65 0.28 -61.06 16 2 C -0.08 -4.61 5.50 84.86 0.47 -4.14 16 3 Si 0.97 47.10 29.55 68.60 2.03 49.13 16 4 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 5 H -0.30 -14.67 7.11 99.48 0.71 -13.96 16 6 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 7 C -0.24 -13.51 9.93 84.03 0.83 -12.67 16 8 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 9 N -0.72 -37.62 4.11 -322.94 -1.33 -38.94 16 10 C 0.15 6.08 2.58 44.99 0.12 6.19 16 11 H 0.07 2.82 8.08 -2.39 -0.02 2.80 16 12 C 0.07 2.47 6.86 71.98 0.49 2.96 16 13 O -0.56 -22.27 11.45 -127.62 -1.46 -23.74 16 14 C 0.08 2.87 3.26 31.07 0.10 2.97 16 15 H 0.10 2.79 8.14 -2.39 -0.02 2.77 16 16 C -0.15 -4.83 6.44 31.91 0.21 -4.62 16 17 C -0.14 -4.05 7.16 32.10 0.23 -3.82 16 18 C 0.04 1.50 7.40 72.65 0.54 2.04 16 19 O -0.37 -14.58 8.50 -127.62 -1.08 -15.67 16 20 H 0.25 15.27 8.31 -92.71 -0.77 14.50 16 21 H 0.38 21.72 6.39 -92.71 -0.59 21.12 16 22 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 23 H 0.02 0.78 8.14 -2.39 -0.02 0.77 16 24 H 0.37 10.97 9.12 -74.06 -0.68 10.30 16 25 H 0.06 2.34 7.17 -2.39 -0.02 2.33 16 26 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 27 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 28 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 29 H 0.10 2.82 8.14 -2.39 -0.02 2.80 16 30 H 0.02 1.07 7.53 -2.39 -0.02 1.05 16 Total: -1.00 -70.05 248.53 1.29 -68.75 By element: Atomic # 1 Polarization: 32.75 SS G_CDS: -0.13 Total: 32.62 kcal Atomic # 6 Polarization: -14.08 SS G_CDS: 2.98 Total: -11.10 kcal Atomic # 7 Polarization: -98.95 SS G_CDS: -1.04 Total: -100.00 kcal Atomic # 8 Polarization: -36.86 SS G_CDS: -2.55 Total: -39.40 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 2.03 Total: 49.13 kcal Total: -70.05 1.29 -68.75 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393354636.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.798 kcal (2) G-P(sol) polarization free energy of solvation -70.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds