Wall clock time and date at job start Mon Mar 30 2020 02:30:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86806 * 119.99688 * 2 1 4 4 H 1.48504 * 109.46662 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47344 * 300.00290 * 3 2 1 6 6 H 1.48500 * 109.47086 * 60.00677 * 3 2 1 7 7 C 1.37877 * 120.00277 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99710 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99611 * 359.97438 * 7 2 1 10 10 N 1.46899 * 109.46705 * 180.02562 * 9 7 2 11 11 C 1.46902 * 111.00091 * 174.95533 * 10 9 7 12 12 C 1.52999 * 110.43427 * 54.09773 * 11 10 9 13 13 O 1.42897 * 109.47258 * 57.56088 * 12 11 10 14 14 C 1.54814 * 110.48921 * 291.41325 * 11 10 9 15 15 C 1.55006 * 102.08744 * 262.20240 * 14 11 10 16 16 O 1.44374 * 103.49186 * 322.97069 * 15 14 11 17 17 C 1.43753 * 106.97164 * 40.06392 * 16 15 14 18 18 H 0.97004 * 120.00471 * 359.97438 * 1 2 3 19 19 H 1.08998 * 109.47275 * 60.00352 * 9 7 2 20 20 H 1.08999 * 109.47212 * 299.99992 * 9 7 2 21 21 H 1.00900 * 111.00306 * 298.90904 * 10 9 7 22 22 H 1.09004 * 109.47179 * 177.55884 * 12 11 10 23 23 H 1.09005 * 109.47342 * 297.55748 * 12 11 10 24 24 H 0.96702 * 113.99894 * 179.97438 * 13 12 11 25 25 H 1.08993 * 110.91113 * 144.00555 * 14 11 10 26 26 H 1.08998 * 110.90451 * 20.39215 * 14 11 10 27 27 H 1.09006 * 110.61336 * 204.47202 * 15 14 11 28 28 H 1.08998 * 110.61864 * 81.47891 * 15 14 11 29 29 H 1.08999 * 109.87413 * 92.91255 * 17 16 15 30 30 H 1.09001 * 109.87625 * 214.05411 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3966 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2057 -3.6156 -0.0005 11 6 1.5095 -4.9035 0.1201 12 6 0.4406 -5.0367 -0.9664 13 8 1.0492 -4.9034 -2.2524 14 6 0.8781 -5.0486 1.5261 15 6 1.9371 -5.9006 2.2712 16 8 2.4061 -6.8163 1.2583 17 6 2.5135 -6.0694 0.0347 18 1 -0.4851 0.8400 0.0004 19 1 0.6241 -2.5567 -0.8903 20 1 0.6247 -2.5570 0.8897 21 1 2.7868 -3.5945 -0.8251 22 1 -0.0359 -6.0141 -0.8895 23 1 -0.3089 -4.2560 -0.8365 24 1 0.4291 -4.9778 -2.9907 25 1 -0.0755 -5.5737 1.4720 26 1 0.7581 -4.0749 2.0009 27 1 1.4798 -6.4442 3.0980 28 1 2.7531 -5.2724 2.6283 29 1 3.5256 -5.6799 -0.0740 30 1 2.2675 -6.7092 -0.8128 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393897647.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:24 Heat of formation + Delta-G solvation = -121.587084 kcal Electronic energy + Delta-G solvation = -13577.034252 eV Core-core repulsion = 11178.123298 eV Total energy + Delta-G solvation = -2398.910953 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 201.115 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.91716 -37.92180 -36.25096 -34.55243 -31.75025 -30.38989 -27.87374 -26.68519 -24.15632 -23.23967 -20.40418 -18.77707 -18.31317 -17.50865 -16.88289 -16.66848 -16.01731 -15.88028 -15.47897 -14.94604 -14.21907 -13.79028 -13.60269 -13.30182 -13.00443 -12.74157 -12.69481 -12.35950 -12.10755 -11.89401 -11.70106 -11.26671 -10.97357 -10.64480 -10.62192 -9.11811 -8.22129 -6.31507 1.39836 1.40417 1.54196 2.39512 2.99399 3.09144 3.12236 3.50663 3.68621 3.94233 4.13471 4.26945 4.33305 4.45976 4.63102 4.76178 4.82985 4.87766 4.98476 5.06646 5.18660 5.33542 5.62018 5.82409 6.06299 6.47471 6.68816 6.81163 6.88951 7.38483 8.88935 Molecular weight = 201.12amu Principal moments of inertia in cm(-1) A = 0.045196 B = 0.009314 C = 0.008652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.377630 B = 3005.660018 C = 3235.310021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.969 3.031 4 H -0.266 1.266 5 H -0.278 1.278 6 H -0.277 1.277 7 C -0.533 4.533 8 H 0.058 0.942 9 C 0.214 3.786 10 N -0.668 5.668 11 C 0.075 3.925 12 C 0.060 3.940 13 O -0.581 6.581 14 C -0.142 4.142 15 C 0.058 3.942 16 O -0.392 6.392 17 C 0.070 3.930 18 H 0.264 0.736 19 H -0.031 1.031 20 H 0.007 0.993 21 H 0.336 0.664 22 H 0.070 0.930 23 H 0.031 0.969 24 H 0.394 0.606 25 H 0.091 0.909 26 H 0.071 0.929 27 H 0.118 0.882 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.625 -10.550 -0.010 10.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.195 4.195 3 Si 0.793 3.207 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.203 1.203 7 C -0.571 4.571 8 H 0.076 0.924 9 C 0.086 3.914 10 N -0.299 5.299 11 C -0.018 4.018 12 C -0.020 4.020 13 O -0.389 6.389 14 C -0.180 4.180 15 C -0.018 4.018 16 O -0.311 6.311 17 C -0.007 4.007 18 H 0.073 0.927 19 H -0.014 1.014 20 H 0.025 0.975 21 H 0.153 0.847 22 H 0.088 0.912 23 H 0.049 0.951 24 H 0.244 0.756 25 H 0.110 0.890 26 H 0.090 0.910 27 H 0.136 0.864 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 1.204 -10.543 1.063 10.665 hybrid contribution -0.891 1.230 -1.330 2.018 sum 0.313 -9.314 -0.267 9.323 Atomic orbital electron populations 1.70074 1.07559 1.27775 1.51815 1.25865 0.95781 1.03054 0.94769 0.85347 0.78908 0.78669 0.77747 1.18993 1.20376 1.20312 1.21574 0.93664 0.91723 1.50150 0.92373 1.19185 0.90572 0.88091 0.93527 1.60797 1.23260 1.00830 1.44980 1.22483 0.93510 0.91433 0.94359 1.22778 0.95373 0.99862 0.83952 1.86381 1.40178 1.96406 1.15944 1.23148 0.99571 1.01359 0.93941 1.23558 0.95480 0.91197 0.91583 1.88777 1.88199 1.34615 1.19471 1.23110 0.98166 0.91736 0.87679 0.92706 1.01383 0.97536 0.84693 0.91215 0.95077 0.75616 0.89050 0.91037 0.86398 0.92440 0.92260 0.88571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.79 13.29 21.45 0.28 -55.51 16 2 C 0.00 0.20 5.46 84.65 0.46 0.66 16 3 Si 0.97 44.63 29.54 68.60 2.03 46.66 16 4 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 5 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 6 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 7 C -0.53 -30.65 9.36 25.60 0.24 -30.41 16 8 H 0.06 3.31 7.81 -2.91 -0.02 3.29 16 9 C 0.21 11.29 4.56 85.56 0.39 11.68 16 10 N -0.67 -29.20 5.94 -469.26 -2.79 -31.99 16 11 C 0.07 2.64 0.65 4.52 0.00 2.64 16 12 C 0.06 1.97 5.04 71.98 0.36 2.33 16 13 O -0.58 -18.47 12.95 -148.98 -1.93 -20.40 16 14 C -0.14 -4.63 6.15 31.90 0.20 -4.43 16 15 C 0.06 1.66 7.72 72.67 0.56 2.22 16 16 O -0.39 -12.29 11.52 -148.98 -1.72 -14.01 16 17 C 0.07 2.23 6.95 72.35 0.50 2.73 16 18 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 19 H -0.03 -1.79 6.66 -2.39 -0.02 -1.81 16 20 H 0.01 0.37 6.43 -2.39 -0.02 0.36 16 21 H 0.34 14.77 8.43 -89.69 -0.76 14.02 16 22 H 0.07 1.86 8.14 -2.38 -0.02 1.84 16 23 H 0.03 1.18 6.69 -2.38 -0.02 1.16 16 24 H 0.39 8.78 9.12 -74.06 -0.68 8.11 16 25 H 0.09 2.55 7.88 -2.39 -0.02 2.53 16 26 H 0.07 2.71 6.45 -2.39 -0.02 2.70 16 27 H 0.12 2.62 8.14 -2.38 -0.02 2.60 16 28 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.06 1.95 7.89 -2.39 -0.02 1.93 16 30 H 0.10 2.77 7.56 -2.39 -0.02 2.75 16 Total: -1.00 -65.49 248.10 -1.68 -67.18 By element: Atomic # 1 Polarization: 20.92 SS G_CDS: -0.28 Total: 20.64 kcal Atomic # 6 Polarization: -15.30 SS G_CDS: 2.72 Total: -12.58 kcal Atomic # 7 Polarization: -84.99 SS G_CDS: -2.50 Total: -87.50 kcal Atomic # 8 Polarization: -30.76 SS G_CDS: -3.65 Total: -34.40 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -65.49 -1.68 -67.18 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393897647.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.412 kcal (2) G-P(sol) polarization free energy of solvation -65.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds