Wall clock time and date at job start Mon Mar 30 2020 02:50:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.42902 * 113.99927 * 2 1 4 4 C 1.52998 * 110.88917 * 297.57443 * 3 2 1 5 5 O 1.42906 * 109.46753 * 67.43062 * 4 3 2 6 6 C 1.55159 * 111.00085 * 173.64955 * 3 2 1 7 7 C 1.54329 * 103.02107 * 277.23721 * 6 3 2 8 8 N 1.47019 * 107.26641 * 338.13775 * 7 6 3 9 9 C 1.36945 * 125.64869 * 178.84835 * 8 7 6 10 10 H 1.07999 * 120.00077 * 179.69844 * 9 8 7 11 11 C 1.38812 * 119.99637 * 359.69678 * 9 8 7 12 12 N 1.31617 * 120.00227 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99854 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47057 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.47102 * 119.99824 * 13 11 9 16 16 H 1.48500 * 109.47389 * 240.00173 * 13 11 9 17 17 C 1.47426 * 108.70491 * 358.59050 * 8 7 6 18 18 H 1.08998 * 109.47018 * 179.97438 * 1 2 3 19 19 H 1.08994 * 109.46908 * 299.99667 * 1 2 3 20 20 H 1.08995 * 109.46706 * 59.99250 * 1 2 3 21 21 H 1.09000 * 109.46917 * 187.42381 * 4 3 2 22 22 H 1.08993 * 109.47557 * 307.42965 * 4 3 2 23 23 H 0.96701 * 113.99992 * 180.02562 * 5 4 3 24 24 H 1.08997 * 110.72042 * 35.79603 * 6 3 2 25 25 H 1.08999 * 110.71343 * 158.88715 * 6 3 2 26 26 H 1.09003 * 109.99010 * 218.66670 * 7 6 3 27 27 H 1.08999 * 109.78366 * 97.50179 * 7 6 3 28 28 H 0.97005 * 120.00046 * 179.97438 * 12 11 9 29 29 H 1.09002 * 110.36613 * 143.19006 * 17 8 7 30 30 H 1.08996 * 110.36652 * 265.51428 * 17 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 1.6277 2.0730 -1.2670 5 8 0.2266 2.3538 -1.2490 6 6 3.5517 1.2279 0.1602 7 6 3.7361 1.0887 1.6861 8 7 2.5172 1.6094 2.3223 9 6 2.2723 1.6440 3.6692 10 1 1.3435 2.0528 4.0389 11 6 3.2179 1.1536 4.5593 12 7 4.3500 0.6559 4.1088 13 14 2.8842 1.2015 6.3967 14 1 1.5499 1.8055 6.6419 15 1 2.9091 -0.1801 6.9405 16 1 3.9280 2.0167 7.0683 17 6 1.6048 2.0937 1.2704 18 1 -0.3633 -1.0277 -0.0005 19 1 -0.3633 0.5138 0.8900 20 1 -0.3632 0.5139 -0.8899 21 1 2.1853 3.0087 -1.3073 22 1 1.8661 1.4700 -2.1431 23 1 -0.0872 2.8394 -2.0241 24 1 3.9501 0.3568 -0.3598 25 1 4.0234 2.1411 -0.2027 26 1 4.6003 1.6678 2.0114 27 1 3.8711 0.0391 1.9471 28 1 5.0109 0.3136 4.7309 29 1 0.5702 1.8778 1.5368 30 1 1.7416 3.1635 1.1128 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000401815851.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:59 Heat of formation + Delta-G solvation = -60.196447 kcal Electronic energy + Delta-G solvation = -13894.911043 eV Core-core repulsion = 11498.662187 eV Total energy + Delta-G solvation = -2396.248856 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 201.115 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.04624 -36.05141 -35.22744 -32.23691 -29.70255 -28.04763 -26.05619 -25.38149 -23.28687 -20.13651 -19.47532 -17.34997 -16.62158 -16.06920 -15.19177 -14.60421 -14.32284 -13.82788 -13.33994 -13.04104 -12.78539 -11.99689 -11.85838 -11.66914 -10.95918 -10.87080 -10.80041 -10.53370 -10.14599 -10.03812 -9.93619 -9.61913 -9.56564 -8.75349 -8.51197 -6.72515 -5.63155 -2.95419 3.44878 3.49930 3.52721 4.31523 4.35993 4.56344 5.21560 5.34747 5.45613 5.57857 5.65405 5.83609 5.95832 6.04175 6.13453 6.20747 6.35892 6.48721 6.60985 6.72251 6.82178 7.61885 7.69848 7.72190 7.89066 7.91206 8.34600 9.30397 9.90685 10.57275 11.49079 Molecular weight = 201.12amu Principal moments of inertia in cm(-1) A = 0.053652 B = 0.010405 C = 0.009840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.756382 B = 2690.265951 C = 2844.826204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.365 6.365 3 C 0.100 3.900 4 C 0.063 3.937 5 O -0.564 6.564 6 C -0.130 4.130 7 C 0.182 3.818 8 N -0.602 5.602 9 C -0.223 4.223 10 H 0.077 0.923 11 C -0.010 4.010 12 N -0.922 5.922 13 Si 0.912 3.088 14 H -0.280 1.280 15 H -0.291 1.291 16 H -0.291 1.291 17 C 0.123 3.877 18 H 0.068 0.932 19 H 0.042 0.958 20 H 0.059 0.941 21 H 0.054 0.946 22 H 0.049 0.951 23 H 0.369 0.631 24 H 0.071 0.929 25 H 0.069 0.931 26 H 0.043 0.957 27 H 0.050 0.950 28 H 0.251 0.749 29 H 0.047 0.953 30 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.940 2.384 -11.047 12.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.284 6.284 3 C 0.059 3.941 4 C -0.016 4.016 5 O -0.369 6.369 6 C -0.168 4.168 7 C 0.057 3.943 8 N -0.328 5.328 9 C -0.352 4.352 10 H 0.095 0.905 11 C -0.206 4.206 12 N -0.570 5.570 13 Si 0.742 3.258 14 H -0.206 1.206 15 H -0.218 1.218 16 H -0.218 1.218 17 C -0.003 4.003 18 H 0.086 0.914 19 H 0.060 0.940 20 H 0.077 0.923 21 H 0.072 0.928 22 H 0.067 0.933 23 H 0.215 0.785 24 H 0.090 0.910 25 H 0.088 0.912 26 H 0.061 0.939 27 H 0.069 0.931 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -4.676 1.832 -10.258 11.421 hybrid contribution -0.315 0.510 0.419 0.732 sum -4.991 2.342 -9.839 11.278 Atomic orbital electron populations 1.22857 0.81638 1.00897 1.01376 1.87889 1.19595 1.26225 1.94706 1.22749 0.94807 0.83630 0.92871 1.22824 0.81743 0.98537 0.98466 1.86643 1.23824 1.78619 1.47788 1.22930 0.91114 1.01236 1.01516 1.21115 0.89374 0.99412 0.84360 1.44421 1.15535 1.71606 1.01252 1.19100 1.01635 1.34207 0.80235 0.90528 1.24791 0.96625 1.01147 0.98047 1.69972 1.08062 1.46533 1.32456 0.86041 0.77280 0.77205 0.85237 1.20566 1.21796 1.21819 1.21945 0.95023 0.95100 0.88233 0.91393 0.93972 0.92261 0.92811 0.93320 0.78491 0.91043 0.91194 0.93874 0.93139 0.93880 0.93513 0.95971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.02 101.05 1.01 1.51 16 2 O -0.37 -7.63 10.48 -35.84 -0.38 -8.01 16 3 C 0.10 1.96 0.87 -88.47 -0.08 1.88 16 4 C 0.06 0.92 6.11 37.16 0.23 1.15 16 5 O -0.56 -7.65 10.26 -35.84 -0.37 -8.02 16 6 C -0.13 -2.58 6.16 -24.89 -0.15 -2.73 16 7 C 0.18 4.69 5.38 -3.06 -0.02 4.67 16 8 N -0.60 -16.44 3.39 -170.07 -0.58 -17.01 16 9 C -0.22 -6.57 10.28 -15.06 -0.15 -6.72 16 10 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 11 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 12 N -0.92 -28.10 10.31 55.49 0.57 -27.53 16 13 Si 0.91 22.90 29.55 -169.99 -5.02 17.88 16 14 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 15 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 16 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 17 C 0.12 2.81 5.87 -2.53 -0.01 2.79 16 18 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 19 H 0.04 0.80 6.22 -51.93 -0.32 0.48 16 20 H 0.06 0.93 5.54 -51.93 -0.29 0.64 16 21 H 0.05 0.72 8.01 -51.93 -0.42 0.30 16 22 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.37 3.02 9.12 45.56 0.42 3.44 16 24 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 25 H 0.07 1.21 7.94 -51.93 -0.41 0.80 16 26 H 0.04 1.19 7.52 -51.93 -0.39 0.80 16 27 H 0.05 1.46 7.37 -51.93 -0.38 1.07 16 28 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 29 H 0.05 1.09 6.04 -51.93 -0.31 0.77 16 30 H 0.02 0.50 8.04 -51.93 -0.42 0.08 16 LS Contribution 241.82 15.07 3.64 3.64 Total: -1.00 -33.44 241.82 -4.74 -38.18 By element: Atomic # 1 Polarization: 2.04 SS G_CDS: -3.34 Total: -1.30 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: 0.73 Total: 2.17 kcal Atomic # 7 Polarization: -44.54 SS G_CDS: 0.00 Total: -44.54 kcal Atomic # 8 Polarization: -15.28 SS G_CDS: -0.74 Total: -16.02 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -5.02 Total: 17.88 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -33.44 -4.74 -38.18 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401815851.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.014 kcal (2) G-P(sol) polarization free energy of solvation -33.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds