Wall clock time and date at job start Mon Mar 30 2020 02:50:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.42902 * 113.99927 * 2 1 4 4 C 1.52998 * 110.88917 * 297.57443 * 3 2 1 5 5 O 1.42906 * 109.46753 * 67.43062 * 4 3 2 6 6 C 1.55159 * 111.00085 * 173.64955 * 3 2 1 7 7 C 1.54329 * 103.02107 * 277.23721 * 6 3 2 8 8 N 1.47019 * 107.26641 * 338.13775 * 7 6 3 9 9 C 1.36945 * 125.64869 * 178.84835 * 8 7 6 10 10 H 1.07999 * 120.00077 * 179.69844 * 9 8 7 11 11 C 1.38812 * 119.99637 * 359.69678 * 9 8 7 12 12 N 1.31617 * 120.00227 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99854 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47057 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.47102 * 119.99824 * 13 11 9 16 16 H 1.48500 * 109.47389 * 240.00173 * 13 11 9 17 17 C 1.47426 * 108.70491 * 358.59050 * 8 7 6 18 18 H 1.08998 * 109.47018 * 179.97438 * 1 2 3 19 19 H 1.08994 * 109.46908 * 299.99667 * 1 2 3 20 20 H 1.08995 * 109.46706 * 59.99250 * 1 2 3 21 21 H 1.09000 * 109.46917 * 187.42381 * 4 3 2 22 22 H 1.08993 * 109.47557 * 307.42965 * 4 3 2 23 23 H 0.96701 * 113.99992 * 180.02562 * 5 4 3 24 24 H 1.08997 * 110.72042 * 35.79603 * 6 3 2 25 25 H 1.08999 * 110.71343 * 158.88715 * 6 3 2 26 26 H 1.09003 * 109.99010 * 218.66670 * 7 6 3 27 27 H 1.08999 * 109.78366 * 97.50179 * 7 6 3 28 28 H 0.97005 * 120.00046 * 179.97438 * 12 11 9 29 29 H 1.09002 * 110.36613 * 143.19006 * 17 8 7 30 30 H 1.08996 * 110.36652 * 265.51428 * 17 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 1.6277 2.0730 -1.2670 5 8 0.2266 2.3538 -1.2490 6 6 3.5517 1.2279 0.1602 7 6 3.7361 1.0887 1.6861 8 7 2.5172 1.6094 2.3223 9 6 2.2723 1.6440 3.6692 10 1 1.3435 2.0528 4.0389 11 6 3.2179 1.1536 4.5593 12 7 4.3500 0.6559 4.1088 13 14 2.8842 1.2015 6.3967 14 1 1.5499 1.8055 6.6419 15 1 2.9091 -0.1801 6.9405 16 1 3.9280 2.0167 7.0683 17 6 1.6048 2.0937 1.2704 18 1 -0.3633 -1.0277 -0.0005 19 1 -0.3633 0.5138 0.8900 20 1 -0.3632 0.5139 -0.8899 21 1 2.1853 3.0087 -1.3073 22 1 1.8661 1.4700 -2.1431 23 1 -0.0872 2.8394 -2.0241 24 1 3.9501 0.3568 -0.3598 25 1 4.0234 2.1411 -0.2027 26 1 4.6003 1.6678 2.0114 27 1 3.8711 0.0391 1.9471 28 1 5.0109 0.3136 4.7309 29 1 0.5702 1.8778 1.5368 30 1 1.7416 3.1635 1.1128 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000401815851.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:59 Heat of formation + Delta-G solvation = -86.927537 kcal Electronic energy + Delta-G solvation = -13896.070190 eV Core-core repulsion = 11498.662187 eV Total energy + Delta-G solvation = -2397.408003 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 201.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.58466 -37.45206 -36.78027 -34.24509 -31.59814 -29.72765 -27.69743 -27.03548 -25.04116 -22.09445 -21.00835 -19.07857 -18.04810 -17.60625 -16.77423 -16.57450 -15.87942 -15.54829 -15.14127 -14.44113 -14.10141 -13.98765 -13.47266 -13.30850 -12.89029 -12.82034 -12.38859 -12.17205 -12.01373 -11.94190 -11.75531 -11.54711 -10.78085 -10.70464 -10.21914 -8.89467 -7.86276 -5.21630 1.43039 1.45249 1.55532 2.47879 2.87981 3.22535 3.33570 3.69328 3.85478 3.96397 4.24417 4.52892 4.56365 4.58940 4.61086 4.72582 4.83525 4.95014 5.02031 5.09236 5.14486 5.40770 5.63815 5.74615 6.18092 6.42564 6.97091 7.08996 7.75729 8.40711 9.24689 Molecular weight = 201.12amu Principal moments of inertia in cm(-1) A = 0.053652 B = 0.010405 C = 0.009840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.756382 B = 2690.265951 C = 2844.826204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.393 6.393 3 C 0.102 3.898 4 C 0.075 3.925 5 O -0.579 6.579 6 C -0.118 4.118 7 C 0.188 3.812 8 N -0.625 5.625 9 C -0.244 4.244 10 H 0.078 0.922 11 C -0.068 4.068 12 N -0.951 5.951 13 Si 0.981 3.019 14 H -0.266 1.266 15 H -0.292 1.292 16 H -0.288 1.288 17 C 0.119 3.881 18 H 0.083 0.917 19 H 0.020 0.980 20 H 0.083 0.917 21 H 0.074 0.926 22 H 0.073 0.927 23 H 0.396 0.604 24 H 0.086 0.914 25 H 0.102 0.898 26 H 0.013 0.987 27 H 0.006 0.994 28 H 0.247 0.753 29 H 0.037 0.963 30 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.851 3.124 -12.453 14.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.313 6.313 3 C 0.061 3.939 4 C -0.003 4.003 5 O -0.388 6.388 6 C -0.156 4.156 7 C 0.063 3.937 8 N -0.351 5.351 9 C -0.373 4.373 10 H 0.095 0.905 11 C -0.260 4.260 12 N -0.600 5.600 13 Si 0.809 3.191 14 H -0.191 1.191 15 H -0.219 1.219 16 H -0.214 1.214 17 C -0.006 4.006 18 H 0.101 0.899 19 H 0.039 0.961 20 H 0.101 0.899 21 H 0.092 0.908 22 H 0.091 0.909 23 H 0.247 0.753 24 H 0.104 0.896 25 H 0.120 0.880 26 H 0.031 0.969 27 H 0.024 0.976 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -5.624 2.599 -11.707 13.245 hybrid contribution -0.091 0.290 0.840 0.893 sum -5.716 2.890 -10.867 12.614 Atomic orbital electron populations 1.22968 0.80169 1.02048 1.01419 1.87850 1.21279 1.27256 1.94890 1.22787 0.94028 0.83381 0.93684 1.22570 0.82678 0.99047 0.96020 1.86548 1.23101 1.79342 1.49846 1.22816 0.92390 1.03558 0.96808 1.20859 0.88212 0.96011 0.88588 1.44746 1.16963 1.71795 1.01636 1.19476 1.01759 1.34163 0.81930 0.90453 1.25693 0.96518 1.01118 1.02713 1.70203 1.08822 1.47276 1.33689 0.84968 0.77681 0.76970 0.79451 1.19086 1.21852 1.21442 1.22130 0.93668 0.95912 0.88901 0.89852 0.96145 0.89864 0.90810 0.90914 0.75333 0.89553 0.87985 0.96896 0.97573 0.94333 0.94525 0.95050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.99 10.02 113.37 1.14 2.13 16 2 O -0.39 -15.88 10.48 -148.40 -1.56 -17.44 16 3 C 0.10 3.77 0.87 -9.40 -0.01 3.76 16 4 C 0.08 1.90 6.11 71.98 0.44 2.34 16 5 O -0.58 -13.42 10.26 -148.40 -1.52 -14.94 16 6 C -0.12 -4.51 6.16 31.79 0.20 -4.31 16 7 C 0.19 9.96 5.38 86.73 0.47 10.42 16 8 N -0.63 -34.76 3.39 -691.97 -2.35 -37.11 16 9 C -0.24 -14.66 10.28 84.03 0.86 -13.79 16 10 H 0.08 4.48 7.83 -2.91 -0.02 4.45 16 11 C -0.07 -4.05 5.49 84.86 0.47 -3.59 16 12 N -0.95 -59.85 10.31 21.65 0.22 -59.62 16 13 Si 0.98 47.82 29.55 68.60 2.03 49.85 16 14 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 15 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 16 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 17 C 0.12 5.35 5.87 86.86 0.51 5.86 16 18 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 19 H 0.02 0.75 6.22 -2.39 -0.01 0.74 16 20 H 0.08 2.37 5.54 -2.39 -0.01 2.36 16 21 H 0.07 1.60 8.01 -2.39 -0.02 1.58 16 22 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 23 H 0.40 4.65 9.12 -74.06 -0.68 3.97 16 24 H 0.09 3.05 8.14 -2.39 -0.02 3.03 16 25 H 0.10 3.24 7.94 -2.39 -0.02 3.22 16 26 H 0.01 0.74 7.52 -2.39 -0.02 0.72 16 27 H 0.01 0.36 7.37 -2.39 -0.02 0.35 16 28 H 0.25 14.99 8.31 -92.70 -0.77 14.22 16 29 H 0.04 1.70 6.04 -2.39 -0.01 1.69 16 30 H 0.03 1.36 8.04 -2.39 -0.02 1.34 16 Total: -1.00 -74.19 241.82 1.35 -72.84 By element: Atomic # 1 Polarization: 3.16 SS G_CDS: 0.46 Total: 3.61 kcal Atomic # 6 Polarization: -1.26 SS G_CDS: 4.07 Total: 2.81 kcal Atomic # 7 Polarization: -94.61 SS G_CDS: -2.13 Total: -96.74 kcal Atomic # 8 Polarization: -29.30 SS G_CDS: -3.08 Total: -32.38 kcal Atomic # 14 Polarization: 47.82 SS G_CDS: 2.03 Total: 49.85 kcal Total: -74.19 1.35 -72.84 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401815851.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.088 kcal (2) G-P(sol) polarization free energy of solvation -74.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds