Wall clock time and date at job start Mon Mar 30 2020 02:51:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42894 * 114.00175 * 2 1 4 4 C 1.52997 * 110.64492 * 301.01495 * 3 2 1 5 5 O 1.42902 * 109.46727 * 301.38866 * 4 3 2 6 6 C 1.55163 * 110.71849 * 64.15780 * 3 2 1 7 7 C 1.54900 * 101.58641 * 82.85803 * 6 3 2 8 8 N 1.47425 * 104.83275 * 37.00855 * 7 6 3 9 9 C 1.36939 * 125.65097 * 155.90460 * 8 7 6 10 10 H 1.07999 * 120.00220 * 179.97438 * 9 8 7 11 11 C 1.38812 * 119.99656 * 359.97438 * 9 8 7 12 12 N 1.31618 * 120.00240 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99544 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.47347 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47009 * 119.99771 * 13 11 9 16 16 H 1.48501 * 109.46940 * 239.99411 * 13 11 9 17 17 C 1.47023 * 108.70150 * 335.87223 * 8 7 6 18 18 H 1.08995 * 109.47042 * 296.70831 * 1 2 3 19 19 H 1.08997 * 109.47245 * 176.70388 * 1 2 3 20 20 H 1.09001 * 109.46949 * 56.70592 * 1 2 3 21 21 H 1.08999 * 109.47421 * 61.39087 * 4 3 2 22 22 H 1.09001 * 109.47477 * 181.39462 * 4 3 2 23 23 H 0.96703 * 114.00056 * 179.97438 * 5 4 3 24 24 H 1.08997 * 111.00551 * 200.93768 * 6 3 2 25 25 H 1.09007 * 111.00354 * 324.78207 * 6 3 2 26 26 H 1.08998 * 110.37173 * 155.85161 * 7 6 3 27 27 H 1.09004 * 110.36966 * 278.17474 * 7 6 3 28 28 H 0.96997 * 119.99770 * 180.02562 * 12 11 9 29 29 H 1.08997 * 109.88571 * 241.63495 * 17 8 7 30 30 H 1.09007 * 109.88136 * 120.47487 * 17 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.5558 2.0982 -1.2270 5 8 1.9312 1.3960 -2.4136 6 6 1.6557 2.0642 1.3062 7 6 2.7241 1.5157 2.2844 8 7 3.9423 1.3663 1.4677 9 6 5.2267 1.3654 1.9428 10 1 6.0551 1.2484 1.2598 11 6 5.4638 1.5150 3.3023 12 7 4.4543 1.6581 4.1346 13 14 7.2158 1.5131 3.9505 14 1 8.1618 1.3369 2.8195 15 1 7.4928 2.8031 4.6319 16 1 7.3853 0.3971 4.9155 17 6 3.5499 1.2175 0.0586 18 1 -0.3633 0.4619 0.9180 19 1 -0.3633 -1.0259 -0.0591 20 1 -0.3633 0.5641 -0.8590 21 1 0.4726 2.2168 -1.2023 22 1 2.0290 3.0802 -1.2209 23 1 1.6738 1.8416 -3.2324 24 1 1.7629 3.1408 1.1740 25 1 0.6505 1.8119 1.6439 26 1 2.8954 2.2239 3.0951 27 1 2.4137 0.5497 2.6827 28 1 4.6201 1.7630 5.0846 29 1 3.8806 0.2496 -0.3181 30 1 3.9898 2.0187 -0.5353 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000401815852.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:01 Heat of formation + Delta-G solvation = -60.162407 kcal Electronic energy + Delta-G solvation = -13786.538370 eV Core-core repulsion = 11390.290990 eV Total energy + Delta-G solvation = -2396.247379 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 201.115 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.10245 -36.00269 -35.45274 -32.17718 -29.49048 -28.34158 -26.59109 -25.13424 -23.28508 -20.20510 -19.41109 -17.27576 -16.67595 -16.23201 -15.16054 -14.77406 -14.56390 -13.84768 -13.32594 -13.11023 -12.68161 -12.24655 -11.80592 -11.59810 -11.15042 -10.93231 -10.84801 -10.61708 -10.04983 -10.02882 -9.98613 -9.62870 -9.56405 -8.97783 -8.58894 -6.76692 -5.59827 -3.00677 3.43914 3.49186 3.52092 4.11359 4.49347 4.57339 5.14628 5.22706 5.47480 5.53248 5.55330 5.62705 5.70011 5.75816 5.95110 6.06789 6.20800 6.52318 6.58112 6.73939 6.84942 7.59571 7.67677 7.74741 7.80814 7.90287 8.40365 9.27897 9.88379 10.54017 11.44745 Molecular weight = 201.12amu Principal moments of inertia in cm(-1) A = 0.058101 B = 0.009829 C = 0.009090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 481.804684 B = 2847.981049 C = 3079.668761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.358 6.358 3 C 0.105 3.895 4 C 0.061 3.939 5 O -0.559 6.559 6 C -0.168 4.168 7 C 0.159 3.841 8 N -0.606 5.606 9 C -0.217 4.217 10 H 0.079 0.921 11 C -0.014 4.014 12 N -0.924 5.924 13 Si 0.916 3.084 14 H -0.280 1.280 15 H -0.291 1.291 16 H -0.291 1.291 17 C 0.158 3.842 18 H 0.040 0.960 19 H 0.079 0.921 20 H 0.035 0.965 21 H 0.043 0.957 22 H 0.056 0.944 23 H 0.369 0.631 24 H 0.069 0.931 25 H 0.065 0.935 26 H 0.108 0.892 27 H 0.016 0.984 28 H 0.251 0.749 29 H 0.036 0.964 30 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.263 1.927 -8.620 12.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.276 6.276 3 C 0.065 3.935 4 C -0.018 4.018 5 O -0.363 6.363 6 C -0.207 4.207 7 C 0.035 3.965 8 N -0.332 5.332 9 C -0.345 4.345 10 H 0.097 0.903 11 C -0.209 4.209 12 N -0.573 5.573 13 Si 0.746 3.254 14 H -0.205 1.205 15 H -0.218 1.218 16 H -0.218 1.218 17 C 0.032 3.968 18 H 0.059 0.941 19 H 0.097 0.903 20 H 0.054 0.946 21 H 0.061 0.939 22 H 0.074 0.926 23 H 0.215 0.785 24 H 0.088 0.912 25 H 0.084 0.916 26 H 0.126 0.874 27 H 0.034 0.966 28 H 0.062 0.938 29 H 0.054 0.946 30 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -7.774 1.343 -7.981 11.223 hybrid contribution 0.283 0.576 -0.066 0.645 sum -7.491 1.919 -8.047 11.160 Atomic orbital electron populations 1.22693 0.82846 1.01955 0.99384 1.88049 1.18302 1.26717 1.94581 1.22604 0.95866 0.83237 0.91808 1.22777 0.97915 0.95258 0.85809 1.86638 1.83332 1.51009 1.15284 1.23591 1.00859 0.99638 0.96610 1.21868 0.82411 0.99282 0.92976 1.44535 1.02726 1.85525 1.00407 1.19150 0.82255 1.41646 0.91477 0.90325 1.24789 0.97726 1.02630 0.95785 1.69797 1.28088 1.57136 1.02319 0.85970 0.83576 0.77168 0.78648 1.20501 1.21813 1.21789 1.21099 0.88452 0.99009 0.88248 0.94144 0.90281 0.94628 0.93852 0.92622 0.78538 0.91222 0.91638 0.87449 0.96643 0.93842 0.94631 0.94621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.41 101.05 1.05 1.47 16 2 O -0.36 -7.29 10.30 -44.10 -0.45 -7.74 16 3 C 0.10 2.07 0.65 -88.78 -0.06 2.01 16 4 C 0.06 0.94 5.44 37.16 0.20 1.14 16 5 O -0.56 -8.47 13.37 -44.10 -0.59 -9.06 16 6 C -0.17 -3.34 6.07 -24.58 -0.15 -3.49 16 7 C 0.16 4.09 5.88 -2.53 -0.01 4.08 16 8 N -0.61 -16.56 3.39 -170.08 -0.58 -17.14 16 9 C -0.22 -6.32 10.27 -15.06 -0.15 -6.47 16 10 H 0.08 2.21 7.83 -52.49 -0.41 1.80 16 11 C -0.01 -0.42 5.49 -17.43 -0.10 -0.51 16 12 N -0.92 -27.66 10.09 55.49 0.56 -27.10 16 13 Si 0.92 22.65 29.55 -169.99 -5.02 17.62 16 14 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 15 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 16 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 17 C 0.16 3.70 6.43 -3.06 -0.02 3.68 16 18 H 0.04 0.58 6.42 -51.93 -0.33 0.25 16 19 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 20 H 0.04 0.47 6.36 -51.93 -0.33 0.14 16 21 H 0.04 0.57 6.64 -51.93 -0.35 0.22 16 22 H 0.06 0.80 8.11 -51.93 -0.42 0.38 16 23 H 0.37 3.46 9.12 45.56 0.42 3.88 16 24 H 0.07 1.30 8.05 -51.93 -0.42 0.88 16 25 H 0.07 1.15 6.23 -51.93 -0.32 0.83 16 26 H 0.11 3.02 5.87 -51.93 -0.30 2.71 16 27 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 29 H 0.04 0.89 8.07 -51.93 -0.42 0.47 16 30 H 0.04 0.81 7.80 -51.92 -0.41 0.40 16 LS Contribution 243.74 15.07 3.67 3.67 Total: -1.00 -33.34 243.74 -4.93 -38.26 By element: Atomic # 1 Polarization: 2.84 SS G_CDS: -3.28 Total: -0.43 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: 0.76 Total: 1.91 kcal Atomic # 7 Polarization: -44.22 SS G_CDS: -0.02 Total: -44.24 kcal Atomic # 8 Polarization: -15.75 SS G_CDS: -1.04 Total: -16.80 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -33.34 -4.93 -38.26 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401815852.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.900 kcal (2) G-P(sol) polarization free energy of solvation -33.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds