Wall clock time and date at job start Mon Mar 30 2020 02:05:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48501 * 109.47055 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46653 * 119.99764 * 3 2 1 6 6 H 1.48495 * 109.47483 * 240.00126 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 H 1.09005 * 108.69601 * 36.78330 * 10 9 7 12 12 C 1.44528 * 108.73335 * 154.99591 * 10 9 7 13 13 C 1.53860 * 113.23815 * 186.73943 * 12 10 9 14 14 C 1.50762 * 108.56886 * 273.56901 * 13 12 10 15 15 S 1.82402 * 111.08058 * 95.92539 * 14 13 12 16 16 C 1.82408 * 105.00573 * 319.17263 * 15 14 13 17 17 C 1.50760 * 111.08378 * 319.18453 * 16 15 14 18 18 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 19 19 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 20 20 H 1.08993 * 108.72851 * 307.71007 * 12 10 9 21 21 H 1.08998 * 108.72935 * 65.77163 * 12 10 9 22 22 H 1.08997 * 109.61654 * 33.29642 * 13 12 10 23 23 H 1.08996 * 109.61565 * 153.84536 * 13 12 10 24 24 H 1.09002 * 109.15222 * 216.33420 * 14 13 12 25 25 H 1.08993 * 109.15870 * 335.50835 * 14 13 12 26 26 H 1.08997 * 109.15043 * 79.59273 * 16 15 14 27 27 H 1.08990 * 109.15665 * 198.76744 * 16 15 14 28 28 H 1.08994 * 109.62144 * 336.17201 * 17 16 15 29 29 H 1.08997 * 109.61155 * 215.63349 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6962 1.2126 6 1 3.1040 1.6964 -1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 1 2.9484 -3.5462 0.6174 12 6 1.2153 -4.6792 0.5758 13 6 1.9409 -6.0208 0.7786 14 6 1.8457 -6.8159 -0.4988 15 16 3.3387 -6.5938 -1.5227 16 6 3.7434 -4.8202 -1.3892 17 6 2.4968 -3.9740 -1.4418 18 1 -0.4850 -0.8401 -0.0004 19 1 0.3556 -2.3880 -0.0016 20 1 0.8515 -4.3286 1.5416 21 1 0.3600 -4.8396 -0.0804 22 1 2.9882 -5.8378 1.0186 23 1 1.4677 -6.5737 1.5900 24 1 1.7331 -7.8723 -0.2549 25 1 0.9732 -6.4849 -1.0620 26 1 4.2578 -4.6409 -0.4451 27 1 4.4007 -4.5403 -2.2123 28 1 1.7048 -4.5206 -1.9537 29 1 2.7068 -3.0458 -1.9732 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575518748.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:03 Heat of formation + Delta-G solvation = 0.841784 kcal Electronic energy + Delta-G solvation = -11433.669422 eV Core-core repulsion = 9482.820253 eV Total energy + Delta-G solvation = -1950.849168 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 201.088 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.10477 -34.06224 -32.28758 -30.49707 -27.65647 -24.38966 -23.03001 -21.41676 -20.11585 -17.31264 -16.59041 -15.28619 -14.94360 -14.34363 -13.76449 -13.63973 -13.30976 -12.91977 -12.62706 -12.24023 -11.70613 -11.12569 -10.88037 -10.67512 -10.58270 -10.32076 -10.18229 -9.97149 -9.46647 -9.18171 -8.92284 -7.55031 -7.07207 -6.13195 -3.13571 1.90210 2.73651 3.49855 3.53103 3.70663 4.60885 4.82091 4.95899 5.12437 5.24233 5.40692 5.45792 5.62048 5.68882 5.77496 5.85977 6.02853 6.07186 6.21738 6.27294 6.44403 6.53523 6.82357 6.98156 7.78076 8.72422 9.18793 10.05357 10.20087 11.35070 Molecular weight = 201.09amu Principal moments of inertia in cm(-1) A = 0.061923 B = 0.008721 C = 0.008043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 452.064150 B = 3209.743586 C = 3480.427996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.044 4.044 3 Si 1.079 2.921 4 H -0.285 1.285 5 H -0.295 1.295 6 H -0.295 1.295 7 C -0.332 4.332 8 H 0.064 0.936 9 N -0.737 5.737 10 C 0.179 3.821 11 H 0.044 0.956 12 C -0.126 4.126 13 C -0.118 4.118 14 C -0.068 4.068 15 S -0.306 6.306 16 C -0.062 4.062 17 C -0.142 4.142 18 H 0.255 0.745 19 H 0.366 0.634 20 H 0.067 0.933 21 H 0.058 0.942 22 H 0.073 0.927 23 H 0.074 0.926 24 H 0.095 0.905 25 H 0.083 0.917 26 H 0.080 0.920 27 H 0.093 0.907 28 H 0.060 0.940 29 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.566 -11.626 -0.331 12.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.242 4.242 3 Si 0.910 3.090 4 H -0.210 1.210 5 H -0.223 1.223 6 H -0.222 1.222 7 C -0.463 4.463 8 H 0.082 0.918 9 N -0.380 5.380 10 C 0.069 3.931 11 H 0.062 0.938 12 C -0.164 4.164 13 C -0.157 4.157 14 C -0.216 4.216 15 S -0.081 6.081 16 C -0.210 4.210 17 C -0.183 4.183 18 H 0.066 0.934 19 H 0.199 0.801 20 H 0.086 0.914 21 H 0.077 0.923 22 H 0.092 0.908 23 H 0.092 0.908 24 H 0.113 0.887 25 H 0.101 0.899 26 H 0.099 0.901 27 H 0.111 0.889 28 H 0.078 0.922 29 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 5.163 -10.679 -0.881 11.895 hybrid contribution -0.683 -0.805 0.559 1.195 sum 4.480 -11.484 -0.323 12.331 Atomic orbital electron populations 1.70888 1.06068 1.28410 1.53527 1.25774 0.97034 1.00999 1.00392 0.83255 0.74241 0.75650 0.75879 1.21026 1.22257 1.22239 1.20034 0.92003 0.85780 1.48453 0.91765 1.42592 1.04713 1.00714 1.89959 1.18845 0.94986 0.86504 0.92739 0.93846 1.20584 0.99273 0.94552 1.01977 1.21569 1.02052 0.96003 0.96122 1.23201 0.97237 1.03381 0.97812 1.86603 1.38191 1.15621 1.67694 1.23241 1.01572 0.90886 1.05289 1.22397 0.94816 0.99656 1.01459 0.93418 0.80117 0.91390 0.92296 0.90790 0.90784 0.88708 0.89879 0.90092 0.88866 0.92159 0.89743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.12 13.70 55.49 0.76 -28.36 15 2 C -0.04 -1.28 5.50 -17.43 -0.10 -1.38 15 3 Si 1.08 25.83 29.92 -169.99 -5.09 20.74 15 4 H -0.28 -6.94 7.11 56.52 0.40 -6.54 15 5 H -0.30 -6.75 7.11 56.52 0.40 -6.35 15 6 H -0.29 -6.74 7.11 56.52 0.40 -6.34 15 7 C -0.33 -9.23 9.63 -15.06 -0.15 -9.37 15 8 H 0.06 1.76 7.83 -52.49 -0.41 1.35 15 9 N -0.74 -18.23 5.04 -56.88 -0.29 -18.52 15 10 C 0.18 3.50 2.18 -71.44 -0.16 3.34 15 11 H 0.04 0.90 7.14 -51.93 -0.37 0.52 15 12 C -0.13 -2.05 4.46 -30.23 -0.13 -2.18 15 13 C -0.12 -1.55 5.59 -27.40 -0.15 -1.70 15 14 C -0.07 -0.87 5.76 36.04 0.21 -0.66 15 15 S -0.31 -4.44 21.98 -107.50 -2.36 -6.80 15 16 C -0.06 -0.94 5.76 36.04 0.21 -0.74 15 17 C -0.14 -2.55 5.19 -27.40 -0.14 -2.69 15 18 H 0.25 7.73 6.77 -40.82 -0.28 7.46 15 19 H 0.37 9.36 6.57 -40.82 -0.27 9.10 15 20 H 0.07 1.16 8.14 -51.93 -0.42 0.74 15 21 H 0.06 0.95 7.22 -51.93 -0.37 0.58 15 22 H 0.07 1.02 6.96 -51.93 -0.36 0.65 15 23 H 0.07 0.83 8.14 -51.93 -0.42 0.41 15 24 H 0.09 1.02 8.14 -51.93 -0.42 0.60 15 25 H 0.08 1.08 6.85 -51.93 -0.36 0.73 15 26 H 0.08 1.23 6.85 -51.93 -0.36 0.88 15 27 H 0.09 1.35 8.14 -51.93 -0.42 0.92 15 28 H 0.06 1.07 6.96 -51.93 -0.36 0.71 15 29 H 0.08 1.74 7.80 -51.93 -0.41 1.33 15 LS Contribution 239.56 15.07 3.61 3.61 Total: -1.00 -30.18 239.56 -7.80 -37.98 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -4.03 Total: 6.74 kcal Atomic # 6 Polarization: -14.97 SS G_CDS: -0.41 Total: -15.39 kcal Atomic # 7 Polarization: -47.36 SS G_CDS: 0.47 Total: -46.88 kcal Atomic # 14 Polarization: 25.83 SS G_CDS: -5.09 Total: 20.74 kcal Atomic # 16 Polarization: -4.44 SS G_CDS: -2.36 Total: -6.80 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -30.18 -7.80 -37.98 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575518748.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.822 kcal (2) G-P(sol) polarization free energy of solvation -30.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds