Wall clock time and date at job start Mon Mar 30 2020 02:05:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48501 * 109.47055 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46653 * 119.99764 * 3 2 1 6 6 H 1.48495 * 109.47483 * 240.00126 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 H 1.09005 * 108.69601 * 36.78330 * 10 9 7 12 12 C 1.44528 * 108.73335 * 154.99591 * 10 9 7 13 13 C 1.53860 * 113.23815 * 186.73943 * 12 10 9 14 14 C 1.50762 * 108.56886 * 273.56901 * 13 12 10 15 15 S 1.82402 * 111.08058 * 95.92539 * 14 13 12 16 16 C 1.82408 * 105.00573 * 319.17263 * 15 14 13 17 17 C 1.50760 * 111.08378 * 319.18453 * 16 15 14 18 18 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 19 19 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 20 20 H 1.08993 * 108.72851 * 307.71007 * 12 10 9 21 21 H 1.08998 * 108.72935 * 65.77163 * 12 10 9 22 22 H 1.08997 * 109.61654 * 33.29642 * 13 12 10 23 23 H 1.08996 * 109.61565 * 153.84536 * 13 12 10 24 24 H 1.09002 * 109.15222 * 216.33420 * 14 13 12 25 25 H 1.08993 * 109.15870 * 335.50835 * 14 13 12 26 26 H 1.08997 * 109.15043 * 79.59273 * 16 15 14 27 27 H 1.08990 * 109.15665 * 198.76744 * 16 15 14 28 28 H 1.08994 * 109.62144 * 336.17201 * 17 16 15 29 29 H 1.08997 * 109.61155 * 215.63349 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6962 1.2126 6 1 3.1040 1.6964 -1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 1 2.9484 -3.5462 0.6174 12 6 1.2153 -4.6792 0.5758 13 6 1.9409 -6.0208 0.7786 14 6 1.8457 -6.8159 -0.4988 15 16 3.3387 -6.5938 -1.5227 16 6 3.7434 -4.8202 -1.3892 17 6 2.4968 -3.9740 -1.4418 18 1 -0.4850 -0.8401 -0.0004 19 1 0.3556 -2.3880 -0.0016 20 1 0.8515 -4.3286 1.5416 21 1 0.3600 -4.8396 -0.0804 22 1 2.9882 -5.8378 1.0186 23 1 1.4677 -6.5737 1.5900 24 1 1.7331 -7.8723 -0.2549 25 1 0.9732 -6.4849 -1.0620 26 1 4.2578 -4.6409 -0.4451 27 1 4.4007 -4.5403 -2.2123 28 1 1.7048 -4.5206 -1.9537 29 1 2.7068 -3.0458 -1.9732 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575518748.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:03 Heat of formation + Delta-G solvation = -17.751961 kcal Electronic energy + Delta-G solvation = -11434.475707 eV Core-core repulsion = 9482.820253 eV Total energy + Delta-G solvation = -1951.655454 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 201.088 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.61002 -35.87992 -33.72381 -32.24153 -29.23620 -25.98407 -24.86943 -22.67324 -21.63449 -19.38405 -17.84589 -16.88914 -16.24697 -16.16688 -15.49215 -15.10801 -14.52503 -14.34669 -14.12592 -13.48321 -13.12908 -12.79463 -12.70003 -12.15413 -12.01088 -11.88729 -11.75152 -11.67358 -11.19596 -10.94251 -10.63378 -9.16637 -8.67937 -8.40709 -5.35047 0.76770 1.57091 1.59007 1.66746 1.83045 2.69330 3.35571 3.47865 3.69509 3.89166 3.99340 4.07612 4.16351 4.46060 4.55795 4.60550 4.67282 4.76307 4.83730 4.94684 5.08069 5.16787 5.35787 5.45200 5.59147 6.47997 7.07293 7.97387 8.08431 9.11225 Molecular weight = 201.09amu Principal moments of inertia in cm(-1) A = 0.061923 B = 0.008721 C = 0.008043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 452.064150 B = 3209.743586 C = 3480.427996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.977 5.977 2 C -0.104 4.104 3 Si 1.126 2.874 4 H -0.294 1.294 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.329 4.329 8 H 0.066 0.934 9 N -0.752 5.752 10 C 0.179 3.821 11 H 0.034 0.966 12 C -0.122 4.122 13 C -0.107 4.107 14 C -0.065 4.065 15 S -0.308 6.308 16 C -0.059 4.059 17 C -0.127 4.127 18 H 0.244 0.756 19 H 0.358 0.642 20 H 0.057 0.943 21 H 0.060 0.940 22 H 0.070 0.930 23 H 0.102 0.898 24 H 0.123 0.877 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.102 0.898 28 H 0.062 0.938 29 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.524 -12.938 -0.155 14.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.625 5.625 2 C -0.295 4.295 3 Si 0.951 3.049 4 H -0.220 1.220 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.460 4.460 8 H 0.084 0.916 9 N -0.393 5.393 10 C 0.071 3.929 11 H 0.052 0.948 12 C -0.160 4.160 13 C -0.146 4.146 14 C -0.213 4.213 15 S -0.083 6.083 16 C -0.207 4.207 17 C -0.169 4.169 18 H 0.054 0.946 19 H 0.190 0.810 20 H 0.075 0.925 21 H 0.079 0.921 22 H 0.089 0.911 23 H 0.121 0.879 24 H 0.141 0.859 25 H 0.100 0.900 26 H 0.101 0.899 27 H 0.121 0.879 28 H 0.081 0.919 29 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.157 -12.051 -0.709 13.551 hybrid contribution -0.978 -0.498 0.506 1.208 sum 5.179 -12.548 -0.203 13.577 Atomic orbital electron populations 1.70998 1.07211 1.27852 1.56414 1.27162 0.97088 1.04609 1.00659 0.82651 0.73408 0.71731 0.77151 1.21981 1.20361 1.20415 1.20355 0.92269 0.87033 1.46371 0.91650 1.42838 1.04563 1.01842 1.90104 1.19086 0.94671 0.85484 0.93664 0.94821 1.20510 0.99048 0.95459 1.01021 1.21496 1.01579 0.94133 0.97373 1.23290 0.95982 1.05021 0.97020 1.86656 1.39360 1.13833 1.68463 1.23089 1.00159 0.91606 1.05859 1.22144 0.96284 0.98866 0.99593 0.94607 0.81016 0.92463 0.92150 0.91109 0.87941 0.85875 0.90035 0.89915 0.87947 0.91916 0.92739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.38 13.70 21.65 0.30 -61.08 15 2 C -0.10 -6.05 5.50 84.86 0.47 -5.58 15 3 Si 1.13 51.99 29.92 68.60 2.05 54.05 15 4 H -0.29 -13.91 7.11 99.48 0.71 -13.20 15 5 H -0.28 -11.90 7.11 99.48 0.71 -11.19 15 6 H -0.28 -11.95 7.11 99.48 0.71 -11.24 15 7 C -0.33 -18.42 9.63 84.03 0.81 -17.61 15 8 H 0.07 3.58 7.83 -2.91 -0.02 3.56 15 9 N -0.75 -37.64 5.04 -333.86 -1.68 -39.33 15 10 C 0.18 6.93 2.18 42.73 0.09 7.02 15 11 H 0.03 1.37 7.14 -2.38 -0.02 1.36 15 12 C -0.12 -3.84 4.46 28.33 0.13 -3.71 15 13 C -0.11 -2.48 5.59 30.16 0.17 -2.32 15 14 C -0.07 -1.45 5.76 71.26 0.41 -1.04 15 15 S -0.31 -8.15 21.98 -56.49 -1.24 -9.40 15 16 C -0.06 -1.72 5.76 71.25 0.41 -1.31 15 17 C -0.13 -4.52 5.19 30.16 0.16 -4.36 15 18 H 0.24 15.24 6.77 -92.71 -0.63 14.61 15 19 H 0.36 18.79 6.57 -92.71 -0.61 18.19 15 20 H 0.06 1.92 8.14 -2.39 -0.02 1.90 15 21 H 0.06 1.88 7.22 -2.39 -0.02 1.86 15 22 H 0.07 1.74 6.96 -2.39 -0.02 1.73 15 23 H 0.10 1.89 8.14 -2.39 -0.02 1.87 15 24 H 0.12 2.11 8.14 -2.39 -0.02 2.10 15 25 H 0.08 1.89 6.85 -2.39 -0.02 1.87 15 26 H 0.08 2.39 6.85 -2.39 -0.02 2.38 15 27 H 0.10 2.81 8.14 -2.39 -0.02 2.79 15 28 H 0.06 2.17 6.96 -2.39 -0.02 2.15 15 29 H 0.05 2.25 7.80 -2.39 -0.02 2.24 15 Total: -1.00 -64.45 239.56 2.73 -61.72 By element: Atomic # 1 Polarization: 22.28 SS G_CDS: 0.66 Total: 22.95 kcal Atomic # 6 Polarization: -31.55 SS G_CDS: 2.64 Total: -28.91 kcal Atomic # 7 Polarization: -99.02 SS G_CDS: -1.39 Total: -100.41 kcal Atomic # 14 Polarization: 51.99 SS G_CDS: 2.05 Total: 54.05 kcal Atomic # 16 Polarization: -8.15 SS G_CDS: -1.24 Total: -9.40 kcal Total: -64.45 2.73 -61.72 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575518748.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.967 kcal (2) G-P(sol) polarization free energy of solvation -64.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds