Wall clock time and date at job start Mon Mar 30 2020 02:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42905 * 109.47264 * 2 1 4 4 C 1.50701 * 109.47212 * 119.99915 * 2 1 3 5 5 H 1.07999 * 119.99742 * 119.99976 * 4 2 1 6 6 C 1.37878 * 120.00001 * 299.99823 * 4 2 1 7 7 N 1.31520 * 119.99833 * 179.97438 * 6 4 2 8 8 Si 1.86793 * 120.00199 * 0.02562 * 6 4 2 9 9 H 1.48498 * 109.47230 * 89.99782 * 8 6 4 10 10 H 1.48496 * 109.47113 * 209.99914 * 8 6 4 11 11 H 1.48508 * 109.47042 * 329.99607 * 8 6 4 12 12 C 1.53002 * 109.47143 * 239.99952 * 2 1 3 13 13 H 1.09006 * 109.50646 * 180.08288 * 12 2 1 14 14 C 1.53100 * 109.50314 * 59.99746 * 12 2 1 15 15 N 1.47012 * 109.25749 * 183.21393 * 14 12 2 16 16 C 1.47016 * 110.75174 * 58.61678 * 15 14 12 17 17 C 1.53100 * 109.25788 * 301.38760 * 16 15 14 18 18 O 1.43008 * 109.50532 * 300.21851 * 12 2 1 19 19 H 1.08992 * 109.47303 * 59.99596 * 1 2 3 20 20 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46832 * 299.99892 * 1 2 3 22 22 H 0.96691 * 114.00079 * 179.97438 * 3 2 1 23 23 H 0.96997 * 120.00123 * 180.02562 * 7 6 4 24 24 H 1.08995 * 109.50961 * 303.15291 * 14 12 2 25 25 H 1.09002 * 109.50479 * 63.24192 * 14 12 2 26 26 H 1.00898 * 111.00366 * 294.84715 * 15 14 12 27 27 H 1.08999 * 109.50492 * 61.31868 * 16 15 14 28 28 H 1.08998 * 109.51044 * 181.40419 * 16 15 14 29 29 H 1.09004 * 109.50293 * 176.78284 * 17 16 15 30 30 H 1.08999 * 109.50597 * 296.86613 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2393 2.4827 7 7 2.1373 -0.8596 3.5566 8 14 0.6248 1.2790 2.6542 9 1 -0.8027 0.8726 2.6999 10 1 0.9760 1.9951 3.9068 11 1 0.8471 2.1765 1.4921 12 6 2.0400 -0.7213 -1.2493 13 1 3.1300 -0.7229 -1.2491 14 6 1.5300 -0.0002 -2.4998 15 7 1.9585 -0.7409 -3.6952 16 6 1.4480 -2.1192 -3.6648 17 6 1.9587 -2.8190 -2.4025 18 8 1.5595 -2.0682 -1.2526 19 1 -0.3633 0.5138 -0.8899 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 2.9703 1.4236 0.0004 23 1 1.9027 -0.5284 4.4376 24 1 0.4415 0.0494 -2.4730 25 1 1.9397 1.0095 -2.5302 26 1 2.9632 -0.7294 -3.7870 27 1 0.3581 -2.1036 -3.6566 28 1 1.7976 -2.6565 -4.5463 29 1 1.5366 -3.8225 -2.3466 30 1 3.0463 -2.8831 -2.4366 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575519472.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:04 Heat of formation + Delta-G solvation = -80.019543 kcal Electronic energy + Delta-G solvation = -14097.696375 eV Core-core repulsion = 11700.587925 eV Total energy + Delta-G solvation = -2397.108450 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 201.115 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.37933 -36.44348 -34.07567 -32.29783 -31.35258 -29.04720 -25.58912 -25.34295 -23.45745 -21.19619 -19.42957 -17.30867 -16.19320 -15.69155 -15.27938 -14.98941 -14.79662 -14.30479 -13.35494 -12.83784 -12.63001 -12.42783 -12.00738 -11.65349 -11.53737 -11.33392 -11.05276 -10.71176 -10.33137 -10.23920 -9.90457 -9.54097 -8.85723 -8.59274 -8.45637 -7.75881 -6.08605 -4.17412 3.39483 3.50777 3.72530 4.26356 4.41533 4.53580 5.09052 5.20584 5.32432 5.37133 5.50631 5.62110 5.74080 5.80345 5.94502 6.02079 6.09556 6.34765 6.56471 6.74837 6.80852 7.06240 7.33813 7.45586 7.61728 7.80204 8.32959 8.83830 9.01231 9.55527 11.02394 Molecular weight = 201.12amu Principal moments of inertia in cm(-1) A = 0.054165 B = 0.012599 C = 0.011368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.810268 B = 2221.839635 C = 2462.551684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.226 3.774 3 O -0.571 6.571 4 C -0.541 4.541 5 H 0.075 0.925 6 C 0.081 3.919 7 N -0.893 5.893 8 Si 0.881 3.119 9 H -0.290 1.290 10 H -0.307 1.307 11 H -0.220 1.220 12 C 0.051 3.949 13 H 0.047 0.953 14 C 0.023 3.977 15 N -0.688 5.688 16 C 0.020 3.980 17 C 0.018 3.982 18 O -0.351 6.351 19 H 0.036 0.964 20 H 0.069 0.931 21 H 0.045 0.955 22 H 0.359 0.641 23 H 0.264 0.736 24 H 0.083 0.917 25 H 0.086 0.914 26 H 0.335 0.665 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.091 0.909 30 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.347 0.110 -11.837 11.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.187 3.813 3 O -0.378 6.378 4 C -0.579 4.579 5 H 0.093 0.907 6 C -0.123 4.123 7 N -0.531 5.531 8 Si 0.711 3.289 9 H -0.218 1.218 10 H -0.235 1.235 11 H -0.143 1.143 12 C -0.009 4.009 13 H 0.065 0.935 14 C -0.107 4.107 15 N -0.316 5.316 16 C -0.110 4.110 17 C -0.061 4.061 18 O -0.269 6.269 19 H 0.055 0.945 20 H 0.088 0.912 21 H 0.064 0.936 22 H 0.206 0.794 23 H 0.073 0.927 24 H 0.101 0.899 25 H 0.105 0.895 26 H 0.152 0.848 27 H 0.098 0.902 28 H 0.096 0.904 29 H 0.109 0.891 30 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -1.624 0.401 -11.936 12.053 hybrid contribution 0.817 0.021 0.814 1.154 sum -0.806 0.422 -11.122 11.159 Atomic orbital electron populations 1.21944 0.95752 1.01466 0.99346 1.18934 0.91568 0.79641 0.91191 1.86675 1.25328 1.29042 1.96725 1.21319 1.33697 1.13859 0.88979 0.90702 1.25021 0.94934 0.96792 0.95543 1.69950 1.44760 1.40282 0.98064 0.87085 0.79285 0.84690 0.77835 1.21787 1.23526 1.14251 1.23358 0.97048 0.83083 0.97438 0.93489 1.22810 1.02245 0.97855 0.87744 1.60968 1.16599 1.13715 1.40306 1.22651 1.01481 0.89425 0.97405 1.23196 0.98652 0.96443 0.87801 1.88231 1.75155 1.23275 1.40231 0.94544 0.91234 0.93607 0.79441 0.92661 0.89900 0.89521 0.84832 0.90237 0.90428 0.89053 0.93963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.91 7.87 37.16 0.29 -2.62 16 2 C 0.23 5.25 0.48 -91.77 -0.04 5.20 16 3 O -0.57 -12.52 9.22 -35.23 -0.32 -12.85 16 4 C -0.54 -15.20 8.49 -34.44 -0.29 -15.49 16 5 H 0.07 2.33 7.95 -52.49 -0.42 1.91 16 6 C 0.08 2.36 5.45 -17.82 -0.10 2.26 16 7 N -0.89 -27.64 13.96 55.43 0.77 -26.87 16 8 Si 0.88 22.47 23.91 -169.99 -4.06 18.41 16 9 H -0.29 -7.37 6.87 56.52 0.39 -6.98 16 10 H -0.31 -7.92 7.11 56.52 0.40 -7.52 16 11 H -0.22 -5.38 5.30 56.52 0.30 -5.08 16 12 C 0.05 1.00 2.19 -26.68 -0.06 0.95 16 13 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 14 C 0.02 0.38 5.59 -3.71 -0.02 0.36 16 15 N -0.69 -9.92 6.93 -113.50 -0.79 -10.71 16 16 C 0.02 0.27 6.76 -3.71 -0.03 0.25 16 17 C 0.02 0.28 7.01 37.21 0.26 0.54 16 18 O -0.35 -7.23 9.39 -35.23 -0.33 -7.56 16 19 H 0.04 0.72 6.36 -51.93 -0.33 0.39 16 20 H 0.07 1.59 7.68 -51.93 -0.40 1.19 16 21 H 0.05 1.09 3.27 -51.93 -0.17 0.92 16 22 H 0.36 6.84 9.04 45.56 0.41 7.25 16 23 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 24 H 0.08 1.47 6.27 -51.93 -0.33 1.15 16 25 H 0.09 1.41 7.79 -51.93 -0.40 1.01 16 26 H 0.34 4.34 8.89 -39.29 -0.35 3.99 16 27 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 28 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 232.77 15.07 3.51 3.51 Total: -1.00 -31.84 232.77 -4.56 -36.40 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -3.35 Total: 8.22 kcal Atomic # 6 Polarization: -8.57 SS G_CDS: 0.02 Total: -8.55 kcal Atomic # 7 Polarization: -37.56 SS G_CDS: -0.01 Total: -37.57 kcal Atomic # 8 Polarization: -19.75 SS G_CDS: -0.66 Total: -20.41 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -4.06 Total: 18.41 kcal Total LS contribution 3.51 Total: 3.51 kcal Total: -31.84 -4.56 -36.40 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575519472.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.624 kcal (2) G-P(sol) polarization free energy of solvation -31.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds