Wall clock time and date at job start Mon Mar 30 2020 02:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42905 * 109.47264 * 2 1 4 4 C 1.50701 * 109.47212 * 119.99915 * 2 1 3 5 5 H 1.07999 * 119.99742 * 119.99976 * 4 2 1 6 6 C 1.37878 * 120.00001 * 299.99823 * 4 2 1 7 7 N 1.31520 * 119.99833 * 179.97438 * 6 4 2 8 8 Si 1.86793 * 120.00199 * 0.02562 * 6 4 2 9 9 H 1.48498 * 109.47230 * 89.99782 * 8 6 4 10 10 H 1.48496 * 109.47113 * 209.99914 * 8 6 4 11 11 H 1.48508 * 109.47042 * 329.99607 * 8 6 4 12 12 C 1.53002 * 109.47143 * 239.99952 * 2 1 3 13 13 H 1.09006 * 109.50646 * 180.08288 * 12 2 1 14 14 C 1.53100 * 109.50314 * 59.99746 * 12 2 1 15 15 N 1.47012 * 109.25749 * 183.21393 * 14 12 2 16 16 C 1.47016 * 110.75174 * 58.61678 * 15 14 12 17 17 C 1.53100 * 109.25788 * 301.38760 * 16 15 14 18 18 O 1.43008 * 109.50532 * 300.21851 * 12 2 1 19 19 H 1.08992 * 109.47303 * 59.99596 * 1 2 3 20 20 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46832 * 299.99892 * 1 2 3 22 22 H 0.96691 * 114.00079 * 179.97438 * 3 2 1 23 23 H 0.96997 * 120.00123 * 180.02562 * 7 6 4 24 24 H 1.08995 * 109.50961 * 303.15291 * 14 12 2 25 25 H 1.09002 * 109.50479 * 63.24192 * 14 12 2 26 26 H 1.00898 * 111.00366 * 294.84715 * 15 14 12 27 27 H 1.08999 * 109.50492 * 61.31868 * 16 15 14 28 28 H 1.08998 * 109.51044 * 181.40419 * 16 15 14 29 29 H 1.09004 * 109.50293 * 176.78284 * 17 16 15 30 30 H 1.08999 * 109.50597 * 296.86613 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2393 2.4827 7 7 2.1373 -0.8596 3.5566 8 14 0.6248 1.2790 2.6542 9 1 -0.8027 0.8726 2.6999 10 1 0.9760 1.9951 3.9068 11 1 0.8471 2.1765 1.4921 12 6 2.0400 -0.7213 -1.2493 13 1 3.1300 -0.7229 -1.2491 14 6 1.5300 -0.0002 -2.4998 15 7 1.9585 -0.7409 -3.6952 16 6 1.4480 -2.1192 -3.6648 17 6 1.9587 -2.8190 -2.4025 18 8 1.5595 -2.0682 -1.2526 19 1 -0.3633 0.5138 -0.8899 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 2.9703 1.4236 0.0004 23 1 1.9027 -0.5284 4.4376 24 1 0.4415 0.0494 -2.4730 25 1 1.9397 1.0095 -2.5302 26 1 2.9632 -0.7294 -3.7870 27 1 0.3581 -2.1036 -3.6566 28 1 1.7976 -2.6565 -4.5463 29 1 1.5366 -3.8225 -2.3466 30 1 3.0463 -2.8831 -2.4366 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575519472.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:04 Heat of formation + Delta-G solvation = -108.411410 kcal Electronic energy + Delta-G solvation = -14098.927538 eV Core-core repulsion = 11700.587925 eV Total energy + Delta-G solvation = -2398.339613 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 201.115 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.82719 -38.14734 -35.40082 -34.44495 -32.96156 -30.63346 -27.37192 -26.98160 -24.91826 -22.57896 -21.11314 -19.30731 -17.64961 -17.15981 -17.04427 -16.73773 -16.16338 -15.63542 -15.14932 -14.57411 -14.39416 -14.08063 -13.63896 -13.46236 -13.06353 -12.99134 -12.48139 -12.19148 -12.04530 -11.97379 -11.69391 -11.09229 -10.86618 -10.73346 -10.23317 -9.11190 -8.33601 -6.45397 1.36640 1.44615 1.70419 2.40685 2.80861 3.11755 3.26509 3.75256 3.91202 4.06370 4.14234 4.22606 4.30934 4.47518 4.55307 4.68735 4.76962 4.94637 4.98315 5.05210 5.15291 5.54078 5.60946 5.85021 6.12808 6.36898 6.37466 6.65910 7.15012 7.34292 8.81513 Molecular weight = 201.12amu Principal moments of inertia in cm(-1) A = 0.054165 B = 0.012599 C = 0.011368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.810268 B = 2221.839635 C = 2462.551684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.227 3.773 3 O -0.569 6.569 4 C -0.539 4.539 5 H 0.029 0.971 6 C 0.025 3.975 7 N -0.944 5.944 8 Si 0.944 3.056 9 H -0.288 1.288 10 H -0.313 1.313 11 H -0.198 1.198 12 C 0.056 3.944 13 H 0.040 0.960 14 C 0.036 3.964 15 N -0.682 5.682 16 C 0.027 3.973 17 C 0.011 3.989 18 O -0.389 6.389 19 H 0.067 0.933 20 H 0.059 0.941 21 H 0.033 0.967 22 H 0.373 0.627 23 H 0.265 0.735 24 H 0.077 0.923 25 H 0.095 0.905 26 H 0.346 0.654 27 H 0.076 0.924 28 H 0.111 0.889 29 H 0.106 0.894 30 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.960 1.165 -14.097 14.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.186 3.814 3 O -0.377 6.377 4 C -0.577 4.577 5 H 0.047 0.953 6 C -0.173 4.173 7 N -0.584 5.584 8 Si 0.772 3.228 9 H -0.216 1.216 10 H -0.242 1.242 11 H -0.120 1.120 12 C -0.004 4.004 13 H 0.058 0.942 14 C -0.093 4.093 15 N -0.310 5.310 16 C -0.103 4.103 17 C -0.067 4.067 18 O -0.309 6.309 19 H 0.086 0.914 20 H 0.078 0.922 21 H 0.052 0.948 22 H 0.221 0.779 23 H 0.073 0.927 24 H 0.095 0.905 25 H 0.114 0.886 26 H 0.164 0.836 27 H 0.095 0.905 28 H 0.129 0.871 29 H 0.124 0.876 30 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -2.218 1.452 -14.236 14.480 hybrid contribution 1.094 -0.439 1.468 1.883 sum -1.123 1.013 -12.767 12.857 Atomic orbital electron populations 1.21893 0.95143 1.01204 1.00195 1.18791 0.92053 0.79915 0.90611 1.86583 1.26716 1.27704 1.96687 1.21604 1.32313 1.12460 0.91284 0.95316 1.25865 0.96378 0.99851 0.95244 1.70090 1.47074 1.42485 0.98711 0.86111 0.77367 0.81342 0.78019 1.21553 1.24169 1.12007 1.23169 0.96532 0.83328 0.97383 0.94171 1.22615 1.01723 0.98088 0.86906 1.60975 1.17535 1.14159 1.38371 1.22687 1.01319 0.88839 0.97468 1.23485 0.99226 0.96826 0.87207 1.88158 1.75709 1.23866 1.43121 0.91408 0.92185 0.94824 0.77897 0.92665 0.90475 0.88628 0.83634 0.90547 0.87053 0.87602 0.93476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.54 7.87 71.98 0.57 -4.98 16 2 C 0.23 10.23 0.48 -11.54 -0.01 10.23 16 3 O -0.57 -23.55 9.22 -148.98 -1.37 -24.93 16 4 C -0.54 -30.79 8.49 25.60 0.22 -30.57 16 5 H 0.03 1.86 7.95 -2.91 -0.02 1.84 16 6 C 0.03 1.49 5.45 84.65 0.46 1.95 16 7 N -0.94 -60.13 13.96 21.45 0.30 -59.83 16 8 Si 0.94 46.43 23.91 68.60 1.64 48.07 16 9 H -0.29 -13.95 6.87 99.48 0.68 -13.27 16 10 H -0.31 -15.54 7.11 99.48 0.71 -14.84 16 11 H -0.20 -8.99 5.30 99.48 0.53 -8.47 16 12 C 0.06 2.14 2.19 30.63 0.07 2.21 16 13 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16 14 C 0.04 1.12 5.59 86.32 0.48 1.60 16 15 N -0.68 -17.31 6.93 -512.99 -3.55 -20.87 16 16 C 0.03 0.62 6.76 86.31 0.58 1.21 16 17 C 0.01 0.31 7.01 72.02 0.50 0.81 16 18 O -0.39 -15.77 9.39 -148.98 -1.40 -17.17 16 19 H 0.07 2.50 6.36 -2.39 -0.02 2.48 16 20 H 0.06 2.68 7.68 -2.39 -0.02 2.66 16 21 H 0.03 1.53 3.27 -2.39 -0.01 1.52 16 22 H 0.37 13.40 9.04 -74.06 -0.67 12.73 16 23 H 0.26 15.89 8.31 -92.71 -0.77 15.12 16 24 H 0.08 2.48 6.27 -2.39 -0.01 2.47 16 25 H 0.10 2.77 7.79 -2.39 -0.02 2.75 16 26 H 0.35 7.74 8.89 -89.70 -0.80 6.95 16 27 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.11 2.68 8.14 -2.38 -0.02 2.66 16 30 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -69.06 232.77 -2.02 -71.08 By element: Atomic # 1 Polarization: 21.69 SS G_CDS: -0.52 Total: 21.18 kcal Atomic # 6 Polarization: -20.42 SS G_CDS: 2.88 Total: -17.54 kcal Atomic # 7 Polarization: -77.44 SS G_CDS: -3.25 Total: -80.69 kcal Atomic # 8 Polarization: -39.33 SS G_CDS: -2.77 Total: -42.10 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 1.64 Total: 48.07 kcal Total: -69.06 -2.02 -71.08 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575519472.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.328 kcal (2) G-P(sol) polarization free energy of solvation -69.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds