Wall clock time and date at job start Mon Mar 30 2020 02:36:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42900 * 109.47286 * 2 1 4 4 C 1.50696 * 109.47115 * 239.99215 * 2 1 3 5 5 H 1.07991 * 120.00368 * 245.26862 * 4 2 1 6 6 C 1.37879 * 119.99824 * 65.27572 * 4 2 1 7 7 N 1.31513 * 120.00065 * 7.11901 * 6 4 2 8 8 Si 1.86800 * 120.00015 * 187.12553 * 6 4 2 9 9 H 1.48507 * 109.47173 * 84.98753 * 8 6 4 10 10 H 1.48502 * 109.46876 * 204.98545 * 8 6 4 11 11 H 1.48495 * 109.46963 * 324.98524 * 8 6 4 12 12 C 1.53002 * 109.46885 * 119.99760 * 2 1 3 13 13 H 1.08997 * 109.50855 * 185.08885 * 12 2 1 14 14 C 1.53098 * 109.50460 * 305.21543 * 12 2 1 15 15 N 1.47020 * 109.25719 * 176.78276 * 14 12 2 16 16 C 1.47007 * 110.75576 * 301.38824 * 15 14 12 17 17 C 1.53092 * 109.26099 * 58.60865 * 16 15 14 18 18 O 1.43016 * 109.50720 * 64.99779 * 12 2 1 19 19 H 1.09000 * 109.47066 * 306.11908 * 1 2 3 20 20 H 1.08997 * 109.47281 * 66.11639 * 1 2 3 21 21 H 1.09003 * 109.47120 * 186.11597 * 1 2 3 22 22 H 0.96698 * 114.00211 * 180.02562 * 3 2 1 23 23 H 0.96999 * 120.00460 * 180.02562 * 7 6 4 24 24 H 1.08995 * 109.51004 * 56.85327 * 14 12 2 25 25 H 1.09002 * 109.50878 * 296.71947 * 14 12 2 26 26 H 1.00899 * 110.99869 * 177.60297 * 15 14 12 27 27 H 1.09000 * 109.50820 * 178.54893 * 16 15 14 28 28 H 1.09005 * 109.50164 * 298.67777 * 16 15 14 29 29 H 1.09004 * 109.50484 * 63.09198 * 17 16 15 30 30 H 1.08999 * 109.51155 * 183.17432 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.0323 -0.7106 -1.2303 5 1 2.5812 -1.6355 -1.1335 6 6 1.7912 -0.1796 -2.4797 7 7 1.2481 1.0127 -2.5940 8 14 2.2360 -1.1539 -4.0103 9 1 1.1260 -2.0814 -4.3465 10 1 2.4613 -0.2204 -5.1430 11 1 3.4740 -1.9341 -3.7580 12 6 2.0400 -0.7212 1.2493 13 1 3.1261 -0.6433 1.2967 14 6 1.4257 -0.0798 2.4964 15 7 1.8581 -0.8247 3.6878 16 6 1.4540 -2.2352 3.5954 17 6 2.0678 -2.8550 2.3373 18 8 1.6619 -2.0994 1.1929 19 1 -0.3633 0.6058 0.8301 20 1 -0.3634 0.4161 -0.9396 21 1 -0.3633 -1.0218 0.1095 22 1 2.9703 1.4236 -0.0004 23 1 1.0781 1.3861 -3.4729 24 1 0.3387 -0.1096 2.4232 25 1 1.7576 0.9556 2.5741 26 1 1.4992 -0.4001 4.5298 27 1 1.8065 -2.7732 4.4754 28 1 0.3673 -2.2994 3.5397 29 1 3.1548 -2.8392 2.4170 30 1 1.7254 -3.8846 2.2345 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575519474.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:06 Heat of formation + Delta-G solvation = -88.781569 kcal Electronic energy + Delta-G solvation = -14010.890184 eV Core-core repulsion = 11613.401784 eV Total energy + Delta-G solvation = -2397.488399 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 201.115 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.99525 -35.91751 -34.04826 -32.07739 -31.04100 -28.40096 -25.61368 -25.26557 -23.36542 -20.70860 -18.97073 -16.90354 -16.46603 -15.40797 -14.88955 -14.56889 -14.27247 -13.95092 -13.69408 -13.20540 -12.42791 -12.24514 -11.52392 -11.17881 -11.02857 -10.92003 -10.81796 -10.52123 -10.32543 -10.13115 -9.89821 -9.09848 -8.81785 -8.48193 -8.16181 -7.99762 -5.88515 -4.04878 3.34945 3.41105 3.44568 4.39934 4.47876 4.50867 5.28574 5.34797 5.44743 5.56436 5.67649 5.83035 5.96089 6.09670 6.17176 6.22751 6.51560 6.58762 6.91514 7.15890 7.17488 7.50077 7.51503 7.86232 7.98462 8.03794 8.34428 8.93643 9.41918 9.67999 11.11910 Molecular weight = 201.12amu Principal moments of inertia in cm(-1) A = 0.049982 B = 0.011867 C = 0.010402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.072795 B = 2358.904796 C = 2691.147249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.259 3.741 3 O -0.550 6.550 4 C -0.548 4.548 5 H 0.060 0.940 6 C 0.077 3.923 7 N -0.855 5.855 8 Si 0.886 3.114 9 H -0.280 1.280 10 H -0.288 1.288 11 H -0.275 1.275 12 C 0.080 3.920 13 H 0.049 0.951 14 C 0.025 3.975 15 N -0.692 5.692 16 C 0.021 3.979 17 C 0.058 3.942 18 O -0.358 6.358 19 H 0.017 0.983 20 H 0.071 0.929 21 H 0.045 0.955 22 H 0.349 0.651 23 H 0.257 0.743 24 H 0.041 0.959 25 H 0.084 0.916 26 H 0.336 0.664 27 H 0.075 0.925 28 H 0.034 0.966 29 H 0.049 0.951 30 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.471 -3.933 9.291 10.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.219 3.781 3 O -0.353 6.353 4 C -0.586 4.586 5 H 0.078 0.922 6 C -0.128 4.128 7 N -0.491 5.491 8 Si 0.713 3.287 9 H -0.206 1.206 10 H -0.214 1.214 11 H -0.200 1.200 12 C 0.021 3.979 13 H 0.067 0.933 14 C -0.104 4.104 15 N -0.323 5.323 16 C -0.109 4.109 17 C -0.020 4.020 18 O -0.276 6.276 19 H 0.036 0.964 20 H 0.090 0.910 21 H 0.064 0.936 22 H 0.193 0.807 23 H 0.067 0.933 24 H 0.059 0.941 25 H 0.103 0.897 26 H 0.152 0.848 27 H 0.093 0.907 28 H 0.053 0.947 29 H 0.067 0.933 30 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.277 -3.851 8.758 9.571 hybrid contribution -0.015 -0.568 -0.367 0.676 sum 0.262 -4.419 8.391 9.487 Atomic orbital electron populations 1.21552 0.96027 0.98793 1.00802 1.18590 0.91626 0.79581 0.88349 1.86545 1.23872 1.28075 1.96758 1.21500 1.37569 1.08876 0.90689 0.92167 1.25014 0.94598 0.94401 0.98784 1.70135 1.41568 1.14426 1.23008 0.86739 0.78947 0.80066 0.82910 1.20578 1.21425 1.19986 1.23118 0.97589 0.81287 0.95860 0.93306 1.22773 0.98685 0.98383 0.90559 1.60615 1.64076 1.02452 1.05204 1.22590 0.98248 0.90458 0.99592 1.22549 0.98556 0.95261 0.85637 1.88148 1.79307 1.21012 1.39114 0.96384 0.90978 0.93606 0.80688 0.93323 0.94061 0.89739 0.84751 0.90677 0.94736 0.93277 0.89443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.85 7.99 37.16 0.30 -2.55 16 2 C 0.26 6.51 0.52 -91.77 -0.05 6.46 16 3 O -0.55 -13.96 11.50 -35.23 -0.41 -14.37 16 4 C -0.55 -15.25 7.82 -34.44 -0.27 -15.52 16 5 H 0.06 1.71 7.48 -52.49 -0.39 1.32 16 6 C 0.08 2.16 5.15 -17.82 -0.09 2.07 16 7 N -0.86 -24.79 11.22 55.43 0.62 -24.17 16 8 Si 0.89 21.57 29.54 -169.99 -5.02 16.54 16 9 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 10 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 12 C 0.08 1.74 2.25 -26.68 -0.06 1.68 16 13 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 14 C 0.02 0.46 5.52 -3.71 -0.02 0.44 16 15 N -0.69 -10.86 6.92 -113.50 -0.79 -11.64 16 16 C 0.02 0.31 6.76 -3.72 -0.03 0.28 16 17 C 0.06 0.96 7.01 37.21 0.26 1.22 16 18 O -0.36 -7.77 9.19 -35.23 -0.32 -8.09 16 19 H 0.02 0.40 6.65 -51.93 -0.35 0.06 16 20 H 0.07 1.98 6.67 -51.93 -0.35 1.63 16 21 H 0.04 1.11 7.67 -51.93 -0.40 0.71 16 22 H 0.35 7.99 9.04 45.56 0.41 8.41 16 23 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 24 H 0.04 0.80 6.31 -51.93 -0.33 0.47 16 25 H 0.08 1.56 7.92 -51.93 -0.41 1.15 16 26 H 0.34 4.37 8.90 -39.29 -0.35 4.02 16 27 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 28 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 242.37 15.07 3.65 3.65 Total: -1.00 -30.55 242.37 -5.63 -36.18 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -3.41 Total: 7.80 kcal Atomic # 6 Polarization: -5.96 SS G_CDS: 0.04 Total: -5.92 kcal Atomic # 7 Polarization: -35.64 SS G_CDS: -0.16 Total: -35.81 kcal Atomic # 8 Polarization: -21.73 SS G_CDS: -0.73 Total: -22.46 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -30.55 -5.63 -36.18 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575519474.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.601 kcal (2) G-P(sol) polarization free energy of solvation -30.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds