Wall clock time and date at job start Mon Mar 30 2020 02:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 113.99439 * 2 1 4 4 C 1.53003 * 109.46942 * 179.97438 * 3 2 1 5 5 H 1.09004 * 110.32607 * 304.22310 * 4 3 2 6 6 C 1.55121 * 110.42123 * 182.02993 * 4 3 2 7 7 C 1.55153 * 101.48662 * 204.29711 * 6 4 3 8 8 H 1.09002 * 110.72030 * 153.73613 * 7 6 4 9 9 O 1.42895 * 110.71918 * 276.83166 * 7 6 4 10 10 C 1.54323 * 103.10236 * 35.28347 * 7 6 4 11 11 N 1.47026 * 107.27157 * 337.89242 * 10 7 6 12 12 C 1.36936 * 125.64787 * 178.90122 * 11 10 7 13 13 H 1.08001 * 120.00047 * 180.02562 * 12 11 10 14 14 C 1.38813 * 120.00176 * 0.03422 * 12 11 10 15 15 N 1.31614 * 119.99764 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 120.00127 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.46747 * 59.99803 * 16 14 12 18 18 H 1.48499 * 109.46864 * 179.97438 * 16 14 12 19 19 H 1.48494 * 109.46727 * 299.99662 * 16 14 12 20 20 H 1.09007 * 109.46843 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.47282 * 299.99561 * 1 2 3 22 22 H 1.08996 * 109.47478 * 60.00283 * 1 2 3 23 23 H 1.09004 * 109.47091 * 60.00478 * 3 2 1 24 24 H 1.08992 * 109.47251 * 300.00028 * 3 2 1 25 25 H 1.09001 * 111.15992 * 86.20193 * 6 4 3 26 26 H 1.09003 * 110.93564 * 322.28982 * 6 4 3 27 27 H 0.96702 * 113.99988 * 177.55977 * 9 7 6 28 28 H 1.09000 * 109.88167 * 97.31380 * 10 7 6 29 29 H 1.09005 * 109.88073 * 218.32695 * 10 7 6 30 30 H 0.97002 * 120.00279 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 1 3.8671 0.5820 0.8461 6 6 4.1895 2.5904 0.0521 7 6 5.5784 2.3082 -0.5793 8 1 5.9837 3.2099 -1.0384 9 8 6.4826 1.7907 0.3986 10 6 5.2653 1.2431 -1.6513 11 7 4.0037 0.5937 -1.2661 12 6 3.3685 -0.3956 -1.9682 13 1 2.4414 -0.8092 -1.5998 14 6 3.9164 -0.8671 -3.1533 15 7 5.0461 -0.3628 -3.6024 16 14 3.0502 -2.2172 -4.1107 17 1 1.6940 -1.7550 -4.5012 18 1 3.8333 -2.5392 -5.3307 19 1 2.9346 -3.4299 -3.2616 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 1.6885 1.8464 0.8901 24 1 1.6885 1.8464 -0.8899 25 1 4.2912 2.9397 1.0797 26 1 3.6255 3.3047 -0.5477 27 1 7.3540 1.5625 0.0468 28 1 5.1549 1.7191 -2.6256 29 1 6.0680 0.5065 -1.6875 30 1 5.4288 -0.6919 -4.4308 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593062387.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:03 Heat of formation + Delta-G solvation = -65.685705 kcal Electronic energy + Delta-G solvation = -13798.958090 eV Core-core repulsion = 11402.471202 eV Total energy + Delta-G solvation = -2396.486888 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 201.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.34980 -36.82959 -34.62523 -32.16997 -29.06362 -28.80828 -26.06647 -24.59602 -23.27774 -20.12002 -19.55501 -17.02447 -16.48734 -15.72497 -15.46463 -14.46360 -14.22371 -13.86627 -13.39006 -12.94774 -12.43528 -12.17885 -11.79835 -11.42406 -10.97778 -10.82656 -10.67666 -10.55311 -10.28883 -9.97814 -9.84188 -9.65957 -9.11842 -8.75465 -8.49736 -6.72938 -5.56992 -2.88212 3.49548 3.53227 3.55381 4.40115 4.61752 4.85955 5.33734 5.52974 5.63221 5.67992 5.74875 5.83087 5.85801 5.98400 6.05263 6.11747 6.24457 6.33321 6.48845 6.55301 7.06759 7.48183 7.65166 7.84022 8.06926 8.30905 8.36898 9.39603 9.97696 10.61430 11.56268 Molecular weight = 201.12amu Principal moments of inertia in cm(-1) A = 0.024496 B = 0.017044 C = 0.010593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.759401 B = 1642.374556 C = 2642.571886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.369 6.369 3 C 0.065 3.935 4 C 0.164 3.836 5 H 0.041 0.959 6 C -0.119 4.119 7 C 0.071 3.929 8 H 0.054 0.946 9 O -0.569 6.569 10 C 0.151 3.849 11 N -0.592 5.592 12 C -0.209 4.209 13 H 0.100 0.900 14 C -0.021 4.021 15 N -0.935 5.935 16 Si 0.911 3.089 17 H -0.288 1.288 18 H -0.293 1.293 19 H -0.286 1.286 20 H 0.078 0.922 21 H 0.029 0.971 22 H 0.036 0.964 23 H 0.034 0.966 24 H 0.048 0.952 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.374 0.626 28 H 0.052 0.948 29 H 0.049 0.951 30 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.319 5.472 5.870 8.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.287 6.287 3 C -0.013 4.013 4 C 0.057 3.943 5 H 0.058 0.942 6 C -0.158 4.158 7 C 0.012 3.988 8 H 0.072 0.928 9 O -0.374 6.374 10 C 0.026 3.974 11 N -0.317 5.317 12 C -0.337 4.337 13 H 0.118 0.882 14 C -0.215 4.215 15 N -0.585 5.585 16 Si 0.742 3.258 17 H -0.215 1.215 18 H -0.220 1.220 19 H -0.213 1.213 20 H 0.096 0.904 21 H 0.048 0.952 22 H 0.054 0.946 23 H 0.052 0.948 24 H 0.066 0.934 25 H 0.088 0.912 26 H 0.095 0.905 27 H 0.220 0.780 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -3.691 5.267 6.047 8.828 hybrid contribution -0.155 -0.572 -1.038 1.195 sum -3.846 4.695 5.009 7.870 Atomic orbital electron populations 1.22645 0.83121 1.01904 0.98950 1.88078 1.17803 1.27925 1.94873 1.22894 0.95535 0.84489 0.98363 1.21275 0.89722 0.92088 0.91254 0.94176 1.22754 0.94884 0.97572 1.00590 1.23183 0.89426 0.96238 0.89981 0.92820 1.86398 1.26584 1.86412 1.38034 1.21876 0.89571 0.92343 0.93617 1.44486 1.23438 1.42324 1.21469 1.19573 1.04042 1.09281 1.00778 0.88221 1.24811 0.97747 1.00426 0.98508 1.69933 1.20142 1.45468 1.22965 0.86189 0.78373 0.82016 0.79186 1.21478 1.21952 1.21320 0.90391 0.95214 0.94575 0.94807 0.93400 0.91153 0.90493 0.77979 0.93018 0.93341 0.94123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 101.05 1.11 1.60 16 2 O -0.37 -7.72 8.11 -35.23 -0.29 -8.00 16 3 C 0.07 1.27 5.26 37.16 0.20 1.47 16 4 C 0.16 3.60 3.55 -66.30 -0.24 3.36 16 5 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 6 C -0.12 -2.19 6.25 -24.47 -0.15 -2.35 16 7 C 0.07 1.38 4.32 -24.90 -0.11 1.27 16 8 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 9 O -0.57 -10.69 13.39 -35.23 -0.47 -11.16 16 10 C 0.15 3.72 5.14 -3.06 -0.02 3.71 16 11 N -0.59 -15.56 3.31 -162.47 -0.54 -16.10 16 12 C -0.21 -6.00 9.51 -15.06 -0.14 -6.14 16 13 H 0.10 2.84 5.48 -52.49 -0.29 2.55 16 14 C -0.02 -0.61 5.49 -17.43 -0.10 -0.70 16 15 N -0.94 -28.14 10.31 55.49 0.57 -27.57 16 16 Si 0.91 23.13 29.55 -169.99 -5.02 18.10 16 17 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 18 H -0.29 -7.48 7.11 56.52 0.40 -7.07 16 19 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 20 H 0.08 1.12 8.14 -51.92 -0.42 0.69 16 21 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 22 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 23 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 26 H 0.08 1.30 8.06 -51.93 -0.42 0.88 16 27 H 0.37 5.58 9.12 45.56 0.42 5.99 16 28 H 0.05 1.39 7.38 -51.93 -0.38 1.00 16 29 H 0.05 1.32 7.43 -51.93 -0.39 0.93 16 30 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 247.44 15.07 3.73 3.73 Total: -1.00 -32.85 247.44 -5.04 -37.89 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: -3.58 Total: 0.90 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: 0.56 Total: 2.22 kcal Atomic # 7 Polarization: -43.70 SS G_CDS: 0.03 Total: -43.67 kcal Atomic # 8 Polarization: -18.41 SS G_CDS: -0.76 Total: -19.17 kcal Atomic # 14 Polarization: 23.13 SS G_CDS: -5.02 Total: 18.10 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -32.85 -5.04 -37.89 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593062387.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.798 kcal (2) G-P(sol) polarization free energy of solvation -32.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds