Wall clock time and date at job start Mon Mar 30 2020 02:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 113.99439 * 2 1 4 4 C 1.53003 * 109.46942 * 179.97438 * 3 2 1 5 5 H 1.09004 * 110.32607 * 304.22310 * 4 3 2 6 6 C 1.55121 * 110.42123 * 182.02993 * 4 3 2 7 7 C 1.55153 * 101.48662 * 204.29711 * 6 4 3 8 8 H 1.09002 * 110.72030 * 153.73613 * 7 6 4 9 9 O 1.42895 * 110.71918 * 276.83166 * 7 6 4 10 10 C 1.54323 * 103.10236 * 35.28347 * 7 6 4 11 11 N 1.47026 * 107.27157 * 337.89242 * 10 7 6 12 12 C 1.36936 * 125.64787 * 178.90122 * 11 10 7 13 13 H 1.08001 * 120.00047 * 180.02562 * 12 11 10 14 14 C 1.38813 * 120.00176 * 0.03422 * 12 11 10 15 15 N 1.31614 * 119.99764 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 120.00127 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.46747 * 59.99803 * 16 14 12 18 18 H 1.48499 * 109.46864 * 179.97438 * 16 14 12 19 19 H 1.48494 * 109.46727 * 299.99662 * 16 14 12 20 20 H 1.09007 * 109.46843 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.47282 * 299.99561 * 1 2 3 22 22 H 1.08996 * 109.47478 * 60.00283 * 1 2 3 23 23 H 1.09004 * 109.47091 * 60.00478 * 3 2 1 24 24 H 1.08992 * 109.47251 * 300.00028 * 3 2 1 25 25 H 1.09001 * 111.15992 * 86.20193 * 6 4 3 26 26 H 1.09003 * 110.93564 * 322.28982 * 6 4 3 27 27 H 0.96702 * 113.99988 * 177.55977 * 9 7 6 28 28 H 1.09000 * 109.88167 * 97.31380 * 10 7 6 29 29 H 1.09005 * 109.88073 * 218.32695 * 10 7 6 30 30 H 0.97002 * 120.00279 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 1 3.8671 0.5820 0.8461 6 6 4.1895 2.5904 0.0521 7 6 5.5784 2.3082 -0.5793 8 1 5.9837 3.2099 -1.0384 9 8 6.4826 1.7907 0.3986 10 6 5.2653 1.2431 -1.6513 11 7 4.0037 0.5937 -1.2661 12 6 3.3685 -0.3956 -1.9682 13 1 2.4414 -0.8092 -1.5998 14 6 3.9164 -0.8671 -3.1533 15 7 5.0461 -0.3628 -3.6024 16 14 3.0502 -2.2172 -4.1107 17 1 1.6940 -1.7550 -4.5012 18 1 3.8333 -2.5392 -5.3307 19 1 2.9346 -3.4299 -3.2616 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 1.6885 1.8464 0.8901 24 1 1.6885 1.8464 -0.8899 25 1 4.2912 2.9397 1.0797 26 1 3.6255 3.3047 -0.5477 27 1 7.3540 1.5625 0.0468 28 1 5.1549 1.7191 -2.6256 29 1 6.0680 0.5065 -1.6875 30 1 5.4288 -0.6919 -4.4308 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593062387.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:03 Heat of formation + Delta-G solvation = -91.552371 kcal Electronic energy + Delta-G solvation = -13800.079752 eV Core-core repulsion = 11402.471202 eV Total energy + Delta-G solvation = -2397.608550 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 201.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.00968 -38.32709 -36.30785 -34.16174 -30.81892 -30.61002 -27.49183 -26.45981 -25.00455 -21.84471 -21.29971 -18.84628 -18.24840 -17.20212 -17.08759 -16.23974 -15.93791 -15.59717 -15.01359 -14.51073 -14.23856 -13.95179 -13.27531 -13.21194 -12.73975 -12.63914 -12.45640 -12.25350 -12.00185 -11.80056 -11.52842 -11.46400 -10.75474 -10.65012 -10.32951 -8.82977 -7.75954 -5.08567 1.44647 1.48543 1.54468 2.54906 2.99545 3.38476 3.48385 3.62685 4.02674 4.15722 4.24643 4.42198 4.46399 4.57628 4.63308 4.69509 4.83726 4.86418 4.93778 5.04497 5.42432 5.54794 5.63437 5.86398 6.26780 6.46593 6.93825 7.22107 7.88053 8.50477 9.35319 Molecular weight = 201.12amu Principal moments of inertia in cm(-1) A = 0.024496 B = 0.017044 C = 0.010593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.759401 B = 1642.374556 C = 2642.571886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.408 6.408 3 C 0.070 3.930 4 C 0.152 3.848 5 H 0.020 0.980 6 C -0.107 4.107 7 C 0.083 3.917 8 H 0.086 0.914 9 O -0.576 6.576 10 C 0.156 3.844 11 N -0.613 5.613 12 C -0.213 4.213 13 H 0.100 0.900 14 C -0.081 4.081 15 N -0.961 5.961 16 Si 0.971 3.029 17 H -0.278 1.278 18 H -0.297 1.297 19 H -0.283 1.283 20 H 0.088 0.912 21 H 0.058 0.942 22 H 0.038 0.962 23 H 0.073 0.927 24 H 0.041 0.959 25 H 0.099 0.901 26 H 0.096 0.904 27 H 0.389 0.611 28 H 0.021 0.979 29 H 0.011 0.989 30 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.441 6.464 6.983 10.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.327 6.327 3 C -0.007 4.007 4 C 0.046 3.954 5 H 0.038 0.962 6 C -0.145 4.145 7 C 0.024 3.976 8 H 0.103 0.897 9 O -0.384 6.384 10 C 0.030 3.970 11 N -0.338 5.338 12 C -0.343 4.343 13 H 0.117 0.883 14 C -0.272 4.272 15 N -0.613 5.613 16 Si 0.801 3.199 17 H -0.204 1.204 18 H -0.223 1.223 19 H -0.210 1.210 20 H 0.106 0.894 21 H 0.077 0.923 22 H 0.057 0.943 23 H 0.091 0.909 24 H 0.059 0.941 25 H 0.117 0.883 26 H 0.114 0.886 27 H 0.238 0.762 28 H 0.040 0.960 29 H 0.029 0.971 30 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -4.828 6.274 7.194 10.697 hybrid contribution 0.181 -0.903 -1.307 1.599 sum -4.647 5.370 5.887 9.224 Atomic orbital electron populations 1.22856 0.80577 1.03166 1.00430 1.87998 1.20690 1.28875 1.95170 1.22802 0.93655 0.84421 0.99807 1.21504 0.91903 0.93567 0.88427 0.96248 1.22762 0.93528 0.95615 1.02597 1.23057 0.90660 0.95186 0.88723 0.89651 1.86362 1.27594 1.86487 1.37927 1.21713 0.88136 0.92650 0.94472 1.44798 1.24014 1.42233 1.22759 1.19873 1.04002 1.09544 1.00839 0.88286 1.25600 0.98778 1.02982 0.99862 1.70155 1.21447 1.46725 1.22980 0.85237 0.77629 0.79484 0.77589 1.20385 1.22304 1.21003 0.89397 0.92340 0.94350 0.90896 0.94111 0.88286 0.88583 0.76184 0.96042 0.97130 0.94955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.76 11.01 113.37 1.25 2.00 16 2 O -0.41 -16.51 8.11 -148.98 -1.21 -17.71 16 3 C 0.07 2.60 5.26 71.98 0.38 2.98 16 4 C 0.15 6.48 3.55 45.54 0.16 6.64 16 5 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 6 C -0.11 -3.60 6.25 32.06 0.20 -3.40 16 7 C 0.08 3.08 4.32 31.78 0.14 3.22 16 8 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 9 O -0.58 -20.58 13.39 -148.98 -1.99 -22.58 16 10 C 0.16 7.79 5.14 86.73 0.45 8.24 16 11 N -0.61 -32.45 3.31 -667.92 -2.21 -34.66 16 12 C -0.21 -12.42 9.51 84.03 0.80 -11.62 16 13 H 0.10 5.67 5.48 -2.91 -0.02 5.66 16 14 C -0.08 -4.83 5.49 84.86 0.47 -4.36 16 15 N -0.96 -59.59 10.31 21.65 0.22 -59.36 16 16 Si 0.97 48.19 29.55 68.60 2.03 50.22 16 17 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 18 H -0.30 -14.74 7.11 99.48 0.71 -14.03 16 19 H -0.28 -13.78 7.11 99.48 0.71 -13.08 16 20 H 0.09 2.34 8.14 -2.38 -0.02 2.32 16 21 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 22 H 0.04 1.08 8.14 -2.39 -0.02 1.07 16 23 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 24 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 25 H 0.10 2.81 8.14 -2.39 -0.02 2.79 16 26 H 0.10 2.89 8.06 -2.39 -0.02 2.87 16 27 H 0.39 11.11 9.12 -74.06 -0.68 10.44 16 28 H 0.02 1.18 7.38 -2.39 -0.02 1.17 16 29 H 0.01 0.60 7.43 -2.38 -0.02 0.58 16 30 H 0.24 14.66 8.31 -92.71 -0.77 13.88 16 Total: -1.00 -71.82 247.44 1.12 -70.69 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: 0.45 Total: 9.70 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: 3.84 Total: 3.70 kcal Atomic # 7 Polarization: -92.04 SS G_CDS: -1.99 Total: -94.02 kcal Atomic # 8 Polarization: -37.09 SS G_CDS: -3.20 Total: -40.29 kcal Atomic # 14 Polarization: 48.19 SS G_CDS: 2.03 Total: 50.22 kcal Total: -71.82 1.12 -70.69 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593062387.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.860 kcal (2) G-P(sol) polarization free energy of solvation -71.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds