Wall clock time and date at job start Mon Mar 30 2020 02:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81392 * 1 3 3 C 1.81403 * 103.00144 * 2 1 4 4 C 1.52991 * 109.47060 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.47119 * 179.97438 * 4 3 2 6 6 C 1.36938 * 120.00250 * 270.00041 * 5 4 3 7 7 H 1.08005 * 119.99846 * 144.92606 * 6 5 4 8 8 C 1.38805 * 119.99907 * 324.92216 * 6 5 4 9 9 N 1.31621 * 120.00096 * 337.94272 * 8 6 5 10 10 Si 1.86799 * 119.99988 * 157.93438 * 8 6 5 11 11 H 1.48501 * 109.46951 * 90.00416 * 10 8 6 12 12 H 1.48498 * 109.47328 * 209.99959 * 10 8 6 13 13 H 1.48494 * 109.47262 * 330.00302 * 10 8 6 14 14 C 1.46504 * 120.00130 * 89.99745 * 5 4 3 15 15 C 1.52997 * 117.50201 * 183.24334 * 14 5 4 16 16 C 1.52998 * 117.50173 * 114.57768 * 14 5 4 17 17 H 1.09000 * 109.47513 * 299.99985 * 1 2 3 18 18 H 1.08992 * 109.47414 * 60.00449 * 1 2 3 19 19 H 1.09007 * 109.47219 * 180.02562 * 1 2 3 20 20 H 1.09005 * 109.46739 * 300.00028 * 3 2 1 21 21 H 1.09001 * 109.46966 * 59.99731 * 3 2 1 22 22 H 1.09005 * 109.47232 * 299.99560 * 4 3 2 23 23 H 1.09001 * 109.47586 * 59.99945 * 4 3 2 24 24 H 0.97001 * 119.99953 * 176.06774 * 9 8 6 25 25 H 1.09008 * 115.54950 * 328.90915 * 14 5 4 26 26 H 1.09001 * 117.49693 * 359.97438 * 15 14 5 27 27 H 1.09000 * 117.50248 * 145.01942 * 15 14 5 28 28 H 1.08993 * 117.49933 * 214.97993 * 16 14 5 29 29 H 1.09004 * 117.49600 * 359.97438 * 16 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7422 1.9399 -0.0006 5 7 4.0718 3.3673 -0.0013 6 6 4.2254 4.0341 -1.1874 7 1 3.9116 5.0641 -1.2725 8 6 4.7845 3.3864 -2.2804 9 7 5.5477 2.3294 -2.0993 10 14 4.4535 4.0145 -4.0082 11 1 5.4918 5.0087 -4.3807 12 1 4.4908 2.8783 -4.9636 13 1 3.1150 4.6558 -4.0538 14 6 4.2371 4.0816 1.2672 15 6 4.5057 5.5863 1.2009 16 6 5.6291 4.6245 1.5961 17 1 -0.3634 0.5138 0.8900 18 1 -0.3634 0.5137 -0.8899 19 1 -0.3634 -1.0277 0.0005 20 1 1.8031 2.2371 -0.8900 21 1 1.8031 2.2371 0.8900 22 1 4.1615 1.4702 0.8892 23 1 4.1608 1.4704 -0.8908 24 1 5.8918 1.8429 -2.8647 25 1 3.6313 3.7145 2.0958 26 1 4.5599 6.0448 0.2135 27 1 4.0771 6.2092 1.9860 28 1 5.9390 4.6151 2.6410 29 1 6.4222 4.4499 0.8689 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609203859.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:57 Heat of formation + Delta-G solvation = 40.773312 kcal Electronic energy + Delta-G solvation = -11256.206883 eV Core-core repulsion = 9307.089276 eV Total energy + Delta-G solvation = -1949.117607 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 201.088 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -37.08709 -33.82095 -31.39251 -28.86031 -28.35002 -24.53903 -21.89864 -21.29561 -19.71448 -16.36209 -15.63000 -15.46582 -14.64121 -14.11760 -13.57154 -13.48548 -13.05695 -12.70877 -12.15295 -11.91993 -11.48103 -11.08366 -10.74764 -10.68379 -10.29898 -10.07008 -9.74370 -9.65326 -9.46170 -9.26967 -8.50174 -7.18001 -6.63690 -5.83850 -3.44301 2.20530 3.19229 3.33113 3.41179 3.43382 4.42491 4.91084 5.28155 5.31446 5.36990 5.38754 5.85161 5.88855 5.90835 6.02590 6.19480 6.25014 6.47006 6.51819 6.63467 6.94265 7.01820 7.20783 7.63390 7.76445 8.42218 9.08738 9.72170 10.27450 11.12639 Molecular weight = 201.09amu Principal moments of inertia in cm(-1) A = 0.023448 B = 0.013770 C = 0.009811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.869334 B = 2032.956244 C = 2853.307626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 S -0.288 6.288 3 C -0.085 4.085 4 C 0.159 3.841 5 N -0.546 5.546 6 C -0.265 4.265 7 H 0.067 0.933 8 C 0.014 3.986 9 N -0.878 5.878 10 Si 0.896 3.104 11 H -0.285 1.285 12 H -0.287 1.287 13 H -0.278 1.278 14 C 0.118 3.882 15 C -0.196 4.196 16 C -0.219 4.219 17 H 0.069 0.931 18 H 0.071 0.929 19 H 0.092 0.908 20 H 0.076 0.924 21 H 0.060 0.940 22 H 0.035 0.965 23 H 0.111 0.889 24 H 0.257 0.743 25 H 0.087 0.913 26 H 0.097 0.903 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.557 -0.824 4.275 7.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.289 4.289 2 S -0.064 6.064 3 C -0.235 4.235 4 C 0.032 3.968 5 N -0.263 5.263 6 C -0.395 4.395 7 H 0.085 0.915 8 C -0.187 4.187 9 N -0.519 5.519 10 Si 0.725 3.275 11 H -0.211 1.211 12 H -0.213 1.213 13 H -0.203 1.203 14 C 0.009 3.991 15 C -0.234 4.234 16 C -0.260 4.260 17 H 0.088 0.912 18 H 0.090 0.910 19 H 0.110 0.890 20 H 0.095 0.905 21 H 0.079 0.921 22 H 0.054 0.946 23 H 0.128 0.872 24 H 0.067 0.933 25 H 0.105 0.895 26 H 0.116 0.884 27 H 0.093 0.907 28 H 0.089 0.911 29 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -5.760 -1.791 4.130 7.310 hybrid contribution -1.016 1.385 -0.891 1.935 sum -6.776 -0.405 3.239 7.521 Atomic orbital electron populations 1.23272 0.95919 1.05407 1.04254 1.86798 1.05593 1.15939 1.98047 1.24423 1.05699 0.89948 1.03460 1.20728 0.87232 0.85446 1.03388 1.43401 1.77146 1.05751 0.99962 1.19056 1.34819 0.97905 0.87718 0.91534 1.25152 0.95641 0.98703 0.99252 1.70027 1.30975 1.20894 1.30036 0.86420 0.78391 0.78162 0.84552 1.21122 1.21252 1.20303 1.21241 0.95515 0.92030 0.90344 1.23046 1.04575 0.93701 1.02082 1.23351 0.95396 1.07561 0.99683 0.91232 0.91037 0.88962 0.90525 0.92105 0.94619 0.87197 0.93291 0.89532 0.88444 0.90739 0.91129 0.88940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.62 10.76 101.05 1.09 -0.53 15 2 S -0.29 -5.24 22.38 -107.50 -2.41 -7.65 15 3 C -0.08 -1.72 6.26 37.15 0.23 -1.48 15 4 C 0.16 3.76 5.34 -4.05 -0.02 3.74 15 5 N -0.55 -13.44 2.78 -165.66 -0.46 -13.90 15 6 C -0.27 -7.07 8.63 -15.06 -0.13 -7.20 15 7 H 0.07 1.77 6.55 -52.48 -0.34 1.42 15 8 C 0.01 0.37 4.96 -17.43 -0.09 0.29 15 9 N -0.88 -24.96 11.33 55.49 0.63 -24.33 15 10 Si 0.90 21.26 29.61 -169.99 -5.03 16.23 15 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 15 12 H -0.29 -6.84 7.11 56.52 0.40 -6.44 15 13 H -0.28 -6.49 7.11 56.52 0.40 -6.09 15 14 C 0.12 2.53 6.56 -67.93 -0.45 2.08 15 15 C -0.20 -3.85 9.80 -26.69 -0.26 -4.12 15 16 C -0.22 -4.49 10.36 -26.69 -0.28 -4.76 15 17 H 0.07 0.86 8.14 -51.92 -0.42 0.44 15 18 H 0.07 0.94 8.14 -51.93 -0.42 0.51 15 19 H 0.09 1.07 8.14 -51.92 -0.42 0.64 15 20 H 0.08 1.64 8.14 -51.92 -0.42 1.22 15 21 H 0.06 1.15 8.14 -51.92 -0.42 0.73 15 22 H 0.04 0.83 8.07 -51.93 -0.42 0.41 15 23 H 0.11 2.95 5.35 -51.93 -0.28 2.68 15 24 H 0.26 7.06 8.32 -40.82 -0.34 6.72 15 25 H 0.09 1.68 8.14 -51.92 -0.42 1.26 15 26 H 0.10 2.08 6.37 -51.93 -0.33 1.75 15 27 H 0.07 1.25 8.14 -51.93 -0.42 0.83 15 28 H 0.07 1.26 8.14 -51.93 -0.42 0.83 15 29 H 0.09 2.16 8.14 -51.93 -0.42 1.74 15 LS Contribution 258.03 15.07 3.89 3.89 Total: -1.00 -27.86 258.03 -7.60 -35.45 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -4.31 Total: 2.29 kcal Atomic # 6 Polarization: -12.08 SS G_CDS: 0.10 Total: -11.98 kcal Atomic # 7 Polarization: -38.40 SS G_CDS: 0.17 Total: -38.23 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.03 Total: 16.23 kcal Atomic # 16 Polarization: -5.24 SS G_CDS: -2.41 Total: -7.65 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -27.86 -7.60 -35.45 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609203859.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.228 kcal (2) G-P(sol) polarization free energy of solvation -27.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds