Wall clock time and date at job start Mon Mar 30 2020 02:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47269 * 2 1 4 4 C 1.53004 * 109.47042 * 180.02562 * 3 2 1 5 5 H 1.09003 * 110.30180 * 305.69855 * 4 3 2 6 6 S 1.83561 * 110.34146 * 67.86130 * 4 3 2 7 7 C 1.84256 * 94.85885 * 137.49097 * 6 4 3 8 8 C 1.55396 * 99.76400 * 326.85657 * 7 6 4 9 9 N 1.46136 * 109.52475 * 40.35836 * 8 7 6 10 10 C 1.36936 * 122.49808 * 149.25531 * 9 8 7 11 11 H 1.08002 * 119.99686 * 200.42913 * 10 9 8 12 12 C 1.38807 * 120.00059 * 20.43115 * 10 9 8 13 13 N 1.31611 * 120.00185 * 10.44059 * 12 10 9 14 14 Si 1.86798 * 119.99718 * 190.44408 * 12 10 9 15 15 H 1.48502 * 109.47392 * 94.98558 * 14 12 10 16 16 H 1.48500 * 109.46991 * 214.97896 * 14 12 10 17 17 H 1.48496 * 109.47628 * 334.97961 * 14 12 10 18 18 H 1.09003 * 109.47368 * 59.99776 * 1 2 3 19 19 H 1.08997 * 109.47691 * 180.02562 * 1 2 3 20 20 H 1.09010 * 109.47077 * 300.00222 * 1 2 3 21 21 H 1.09000 * 109.47014 * 239.99884 * 2 1 3 22 22 H 1.09004 * 109.46649 * 120.00026 * 2 1 3 23 23 H 1.09000 * 109.47638 * 60.00298 * 3 2 1 24 24 H 1.09004 * 109.47306 * 299.99624 * 3 2 1 25 25 H 1.09002 * 111.34031 * 84.49465 * 7 6 4 26 26 H 1.09001 * 111.34562 * 209.22028 * 7 6 4 27 27 H 1.09000 * 109.46390 * 160.38362 * 8 7 6 28 28 H 1.08992 * 109.47029 * 280.32754 * 8 7 6 29 29 H 0.97001 * 120.00299 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 3.9486 0.8457 0.8293 6 16 4.2074 0.7940 -1.5953 7 6 5.5307 2.0652 -1.7629 8 6 4.8207 3.2745 -1.0933 9 7 4.0834 2.8179 0.0829 10 6 3.8853 3.6118 1.1809 11 1 3.6412 3.1649 2.1334 12 6 3.9982 4.9908 1.0698 13 7 4.0905 5.5500 -0.1180 14 14 4.0192 6.0529 2.6063 15 1 5.4247 6.3249 3.0011 16 1 3.3255 7.3366 2.3302 17 1 3.3240 5.3419 3.7092 18 1 -0.3634 0.5139 -0.8900 19 1 -0.3634 -1.0276 0.0005 20 1 -0.3634 0.5139 0.8900 21 1 1.8933 -0.5139 -0.8900 22 1 1.8933 -0.5139 0.8900 23 1 1.6768 1.9563 0.8900 24 1 1.6768 1.9563 -0.8900 25 1 6.4280 1.7784 -1.2146 26 1 5.7562 2.2674 -2.8100 27 1 5.5652 4.0114 -0.7920 28 1 4.1284 3.7277 -1.8027 29 1 4.1690 6.5137 -0.1957 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000685967154.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:31 Heat of formation + Delta-G solvation = 6.564481 kcal Electronic energy + Delta-G solvation = -11443.652269 eV Core-core repulsion = 9493.051256 eV Total energy + Delta-G solvation = -1950.601014 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 201.088 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -36.62815 -34.26466 -31.68420 -29.80042 -27.54393 -24.30029 -22.93965 -20.71292 -20.06024 -17.05476 -15.51605 -15.01709 -14.69323 -14.41499 -13.67291 -13.30445 -12.65022 -12.32944 -11.80321 -11.70175 -11.40948 -10.98609 -10.90977 -10.82750 -10.49159 -10.46963 -10.17489 -10.11537 -9.88898 -9.14474 -8.60757 -7.11483 -6.92075 -5.90322 -3.32122 2.66834 3.04308 3.32295 3.39073 3.40492 4.37172 5.12268 5.28267 5.45858 5.53935 5.59722 5.83612 5.91491 6.02244 6.14618 6.18478 6.27239 6.28752 6.41503 6.55484 6.84110 7.04911 7.18335 7.48855 7.65905 8.17059 9.04450 9.63352 10.19119 11.20467 Molecular weight = 201.09amu Principal moments of inertia in cm(-1) A = 0.032344 B = 0.012973 C = 0.009943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.498352 B = 2157.878379 C = 2815.477364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.124 4.124 3 C -0.114 4.114 4 C 0.235 3.765 5 H 0.059 0.941 6 S -0.348 6.348 7 C -0.083 4.083 8 C 0.171 3.829 9 N -0.594 5.594 10 C -0.245 4.245 11 H 0.075 0.925 12 C 0.003 3.997 13 N -0.909 5.909 14 Si 0.913 3.087 15 H -0.287 1.287 16 H -0.289 1.289 17 H -0.278 1.278 18 H 0.052 0.948 19 H 0.046 0.954 20 H 0.051 0.949 21 H 0.061 0.939 22 H 0.055 0.945 23 H 0.074 0.926 24 H 0.066 0.934 25 H 0.078 0.922 26 H 0.095 0.905 27 H 0.082 0.918 28 H 0.044 0.956 29 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.444 -6.696 -0.708 6.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.162 4.162 3 C -0.155 4.155 4 C 0.018 3.982 5 H 0.076 0.924 6 S -0.122 6.122 7 C -0.232 4.232 8 C 0.045 3.955 9 N -0.319 5.319 10 C -0.375 4.375 11 H 0.093 0.907 12 C -0.195 4.195 13 N -0.554 5.554 14 Si 0.743 3.257 15 H -0.214 1.214 16 H -0.216 1.216 17 H -0.203 1.203 18 H 0.071 0.929 19 H 0.065 0.935 20 H 0.071 0.929 21 H 0.079 0.921 22 H 0.074 0.926 23 H 0.092 0.908 24 H 0.085 0.915 25 H 0.097 0.903 26 H 0.114 0.886 27 H 0.100 0.900 28 H 0.062 0.938 29 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -1.746 -7.437 -1.434 7.773 hybrid contribution 0.342 1.550 1.363 2.092 sum -1.404 -5.888 -0.071 6.053 Atomic orbital electron populations 1.21735 0.96345 1.00673 1.01702 1.21556 0.95387 0.97771 1.01476 1.22021 0.95050 0.95380 1.03070 1.23050 0.94559 0.89443 0.91125 0.92363 1.87425 1.43523 1.46357 1.34913 1.24993 0.97544 0.96987 1.03715 1.21346 0.94711 0.91012 0.88439 1.44497 1.60495 1.09558 1.17350 1.19060 1.43947 0.87348 0.87141 0.90682 1.25013 1.00907 0.96698 0.96888 1.69986 1.54282 1.10118 1.21022 0.86095 0.77725 0.79884 0.82016 1.21364 1.21576 1.20298 0.92903 0.93453 0.92939 0.92062 0.92605 0.90767 0.91536 0.90299 0.88641 0.89983 0.93817 0.93372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.91 37.16 0.37 -1.68 15 2 C -0.12 -2.00 5.80 -26.73 -0.16 -2.15 15 3 C -0.11 -2.25 4.87 -26.73 -0.13 -2.38 15 4 C 0.23 5.08 3.48 -3.73 -0.01 5.06 15 5 H 0.06 1.26 8.14 -51.93 -0.42 0.84 15 6 S -0.35 -7.00 21.82 -107.50 -2.35 -9.34 15 7 C -0.08 -1.63 7.72 38.43 0.30 -1.33 15 8 C 0.17 4.10 4.94 -2.97 -0.01 4.09 15 9 N -0.59 -14.87 3.04 -167.04 -0.51 -15.37 15 10 C -0.24 -6.57 9.45 -15.06 -0.14 -6.71 15 11 H 0.08 1.97 7.85 -52.49 -0.41 1.55 15 12 C 0.00 0.09 5.21 -17.44 -0.09 0.00 15 13 N -0.91 -25.74 10.74 55.49 0.60 -25.14 15 14 Si 0.91 21.32 29.57 -169.99 -5.03 16.29 15 15 H -0.29 -6.69 7.11 56.52 0.40 -6.29 15 16 H -0.29 -6.84 7.11 56.52 0.40 -6.43 15 17 H -0.28 -6.33 7.11 56.52 0.40 -5.93 15 18 H 0.05 0.73 8.14 -51.93 -0.42 0.31 15 19 H 0.05 0.57 8.14 -51.93 -0.42 0.15 15 20 H 0.05 0.71 8.14 -51.92 -0.42 0.29 15 21 H 0.06 1.01 7.34 -51.93 -0.38 0.63 15 22 H 0.06 0.86 8.14 -51.93 -0.42 0.44 15 23 H 0.07 1.54 7.87 -51.93 -0.41 1.13 15 24 H 0.07 1.42 8.14 -51.93 -0.42 1.00 15 25 H 0.08 1.47 8.14 -51.93 -0.42 1.05 15 26 H 0.10 1.65 8.14 -51.93 -0.42 1.22 15 27 H 0.08 2.13 6.87 -51.93 -0.36 1.77 15 28 H 0.04 1.15 7.88 -51.93 -0.41 0.74 15 29 H 0.26 7.02 8.31 -40.82 -0.34 6.68 15 LS Contribution 249.12 15.07 3.75 3.75 Total: -1.00 -27.87 249.12 -7.90 -35.77 By element: Atomic # 1 Polarization: 3.63 SS G_CDS: -4.48 Total: -0.86 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: 0.12 Total: -5.10 kcal Atomic # 7 Polarization: -40.61 SS G_CDS: 0.09 Total: -40.52 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.03 Total: 16.29 kcal Atomic # 16 Polarization: -7.00 SS G_CDS: -2.35 Total: -9.34 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -27.87 -7.90 -35.77 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685967154.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.334 kcal (2) G-P(sol) polarization free energy of solvation -27.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds