Wall clock time and date at job start Mon Mar 30 2020 02:30:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86809 * 119.99817 * 2 1 4 4 H 1.48496 * 109.46873 * 270.00106 * 3 2 1 5 5 H 1.48502 * 109.46928 * 29.99631 * 3 2 1 6 6 H 1.48497 * 109.47089 * 149.99674 * 3 2 1 7 7 C 1.37873 * 120.00388 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00397 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99750 * 0.02562 * 7 2 1 10 10 N 1.46900 * 109.47124 * 179.97438 * 9 7 2 11 11 C 1.46846 * 110.99855 * 293.94694 * 10 9 7 12 12 C 1.53032 * 109.52699 * 185.83935 * 11 10 9 13 13 C 1.53127 * 109.27784 * 300.82547 * 12 11 10 14 14 H 1.08996 * 109.57402 * 177.58824 * 13 12 11 15 15 O 1.42900 * 109.51824 * 297.74525 * 13 12 11 16 16 C 1.53112 * 109.15866 * 57.65275 * 13 12 11 17 17 H 1.08993 * 109.50775 * 62.32988 * 16 13 12 18 18 O 1.42903 * 109.50280 * 182.40839 * 16 13 12 19 19 C 1.46847 * 111.00261 * 58.15667 * 10 9 7 20 20 H 0.97002 * 119.99962 * 0.02562 * 1 2 3 21 21 H 1.08998 * 109.47579 * 59.99092 * 9 7 2 22 22 H 1.08998 * 109.47134 * 299.99356 * 9 7 2 23 23 H 1.09008 * 109.45950 * 65.82217 * 11 10 9 24 24 H 1.09002 * 109.46385 * 305.86166 * 11 10 9 25 25 H 1.09002 * 109.50812 * 180.88502 * 12 11 10 26 26 H 1.08995 * 109.50305 * 60.75977 * 12 11 10 27 27 H 0.96702 * 114.00164 * 299.68096 * 15 13 12 28 28 H 0.96700 * 114.00311 * 180.02562 * 18 16 13 29 29 H 1.09003 * 109.45630 * 54.15194 * 19 10 9 30 30 H 1.09001 * 109.46370 * 294.18047 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2057 -3.6156 0.0005 11 6 2.9706 -3.6540 -1.2524 12 6 3.8470 -4.9082 -1.2785 13 6 4.7980 -4.8855 -0.0785 14 1 5.3950 -5.7974 -0.0684 15 8 5.6611 -3.7507 -0.1747 16 6 3.9776 -4.7968 1.2112 17 1 3.3484 -5.6819 1.3039 18 8 4.8593 -4.7186 2.3331 19 6 3.0975 -3.5456 1.1651 20 1 -0.4850 0.8401 -0.0004 21 1 0.6247 -2.5570 -0.8896 22 1 0.6242 -2.5567 0.8903 23 1 3.6023 -2.7681 -1.3195 24 1 2.2826 -3.6740 -2.0975 25 1 4.4264 -4.9283 -2.2016 26 1 3.2152 -5.7948 -1.2253 27 1 6.2116 -3.7415 -0.9696 28 1 4.4068 -4.6603 3.1857 29 1 2.5014 -3.4872 2.0759 30 1 3.7285 -2.6603 1.0867 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687697319.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:02 Heat of formation + Delta-G solvation = -100.966451 kcal Electronic energy + Delta-G solvation = -13759.489214 eV Core-core repulsion = 11361.472438 eV Total energy + Delta-G solvation = -2398.016776 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 201.115 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.10319 -35.75996 -35.64234 -32.70164 -30.88737 -29.04885 -26.55411 -23.85412 -22.48159 -21.08947 -19.30431 -16.91855 -16.70041 -16.19910 -15.14214 -14.59094 -14.54549 -14.43156 -13.42816 -12.89778 -12.58533 -12.16667 -11.83169 -11.63573 -11.18206 -11.05019 -10.92185 -10.68289 -10.33567 -10.04451 -9.78675 -9.71912 -9.63127 -9.20695 -8.41953 -7.18286 -6.01441 -4.10125 3.29289 3.35929 3.41295 4.40580 4.43120 4.52192 5.04033 5.17320 5.29072 5.35143 5.56622 5.67354 5.78027 6.01505 6.14388 6.16250 6.43430 6.60037 6.80380 6.94147 7.25232 7.52763 7.87272 7.91335 7.99493 8.04654 8.28494 8.31478 9.00607 9.56977 11.03716 Molecular weight = 201.12amu Principal moments of inertia in cm(-1) A = 0.041208 B = 0.010558 C = 0.010185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.310651 B = 2651.437745 C = 2748.572126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.064 3.936 3 Si 0.889 3.111 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.549 4.549 8 H 0.060 0.940 9 C 0.188 3.812 10 N -0.540 5.540 11 C 0.064 3.936 12 C -0.149 4.149 13 C 0.115 3.885 14 H 0.050 0.950 15 O -0.550 6.550 16 C 0.112 3.888 17 H 0.066 0.934 18 O -0.564 6.564 19 C 0.038 3.962 20 H 0.262 0.738 21 H 0.031 0.969 22 H 0.031 0.969 23 H 0.046 0.954 24 H 0.065 0.935 25 H 0.066 0.934 26 H 0.074 0.926 27 H 0.368 0.632 28 H 0.374 0.626 29 H 0.063 0.937 30 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.246 -9.066 -0.501 11.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.138 4.138 3 Si 0.717 3.283 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.588 4.588 8 H 0.078 0.922 9 C 0.062 3.938 10 N -0.265 5.265 11 C -0.065 4.065 12 C -0.187 4.187 13 C 0.056 3.944 14 H 0.068 0.932 15 O -0.354 6.354 16 C 0.053 3.947 17 H 0.084 0.916 18 O -0.368 6.368 19 C -0.091 4.091 20 H 0.071 0.929 21 H 0.049 0.951 22 H 0.049 0.951 23 H 0.064 0.936 24 H 0.084 0.916 25 H 0.085 0.915 26 H 0.093 0.907 27 H 0.214 0.786 28 H 0.221 0.779 29 H 0.082 0.918 30 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 6.978 -9.273 -0.354 11.611 hybrid contribution 0.605 1.666 -0.214 1.785 sum 7.583 -7.608 -0.568 10.756 Atomic orbital electron populations 1.69947 1.06016 1.26805 1.50392 1.24964 0.94760 0.99177 0.94926 0.86637 0.80018 0.83525 0.78145 1.20659 1.21164 1.19837 1.21802 0.93558 0.92007 1.51398 0.92190 1.19741 0.90629 0.85483 0.97915 1.62457 1.16807 1.46624 1.00624 1.21805 0.95681 0.95502 0.93521 1.22324 0.98603 1.00692 0.97083 1.21767 0.90370 0.88307 0.93940 0.93235 1.86668 1.56571 1.45420 1.46716 1.21911 0.89753 0.98204 0.84881 0.91614 1.86518 1.36558 1.97151 1.16592 1.22448 0.94879 0.96787 0.95002 0.92854 0.95078 0.95099 0.93567 0.91650 0.91530 0.90728 0.78605 0.77950 0.91848 0.92386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.53 13.29 55.43 0.74 -25.79 16 2 C 0.06 1.83 5.46 -17.82 -0.10 1.73 16 3 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 6 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.55 -15.41 7.74 -34.44 -0.27 -15.68 16 8 H 0.06 1.71 5.84 -52.49 -0.31 1.41 16 9 C 0.19 4.91 5.13 -4.98 -0.03 4.88 16 10 N -0.54 -11.75 4.86 -236.11 -1.15 -12.89 16 11 C 0.06 1.24 5.00 -3.84 -0.02 1.22 16 12 C -0.15 -2.23 5.80 -26.65 -0.15 -2.39 16 13 C 0.12 1.82 3.50 -26.61 -0.09 1.73 16 14 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 15 O -0.55 -9.35 12.03 -46.44 -0.56 -9.91 16 16 C 0.11 1.89 3.41 -26.65 -0.09 1.80 16 17 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 18 O -0.56 -9.28 13.18 -46.44 -0.61 -9.89 16 19 C 0.04 0.78 4.50 -3.83 -0.02 0.76 16 20 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 21 H 0.03 0.86 8.06 -51.93 -0.42 0.44 16 22 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 23 H 0.05 1.01 6.65 -51.92 -0.35 0.66 16 24 H 0.07 1.27 8.06 -51.93 -0.42 0.85 16 25 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.37 4.47 9.09 45.56 0.41 4.88 16 28 H 0.37 4.55 9.08 45.56 0.41 4.96 16 29 H 0.06 1.28 8.12 -51.93 -0.42 0.86 16 30 H 0.06 1.39 6.19 -51.93 -0.32 1.07 16 LS Contribution 244.86 15.07 3.69 3.69 Total: -1.00 -32.32 244.86 -6.33 -38.65 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -2.65 Total: 5.18 kcal Atomic # 6 Polarization: -5.18 SS G_CDS: -0.76 Total: -5.94 kcal Atomic # 7 Polarization: -38.27 SS G_CDS: -0.41 Total: -38.68 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: -1.17 Total: -19.80 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -32.32 -6.33 -38.65 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687697319.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.318 kcal (2) G-P(sol) polarization free energy of solvation -32.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds