Wall clock time and date at job start Mon Mar 30 2020 02:30:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86809 * 119.99817 * 2 1 4 4 H 1.48496 * 109.46873 * 270.00106 * 3 2 1 5 5 H 1.48502 * 109.46928 * 29.99631 * 3 2 1 6 6 H 1.48497 * 109.47089 * 149.99674 * 3 2 1 7 7 C 1.37873 * 120.00388 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00397 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99750 * 0.02562 * 7 2 1 10 10 N 1.46900 * 109.47124 * 179.97438 * 9 7 2 11 11 C 1.46846 * 110.99855 * 293.94694 * 10 9 7 12 12 C 1.53032 * 109.52699 * 185.83935 * 11 10 9 13 13 C 1.53127 * 109.27784 * 300.82547 * 12 11 10 14 14 H 1.08996 * 109.57402 * 177.58824 * 13 12 11 15 15 O 1.42900 * 109.51824 * 297.74525 * 13 12 11 16 16 C 1.53112 * 109.15866 * 57.65275 * 13 12 11 17 17 H 1.08993 * 109.50775 * 62.32988 * 16 13 12 18 18 O 1.42903 * 109.50280 * 182.40839 * 16 13 12 19 19 C 1.46847 * 111.00261 * 58.15667 * 10 9 7 20 20 H 0.97002 * 119.99962 * 0.02562 * 1 2 3 21 21 H 1.08998 * 109.47579 * 59.99092 * 9 7 2 22 22 H 1.08998 * 109.47134 * 299.99356 * 9 7 2 23 23 H 1.09008 * 109.45950 * 65.82217 * 11 10 9 24 24 H 1.09002 * 109.46385 * 305.86166 * 11 10 9 25 25 H 1.09002 * 109.50812 * 180.88502 * 12 11 10 26 26 H 1.08995 * 109.50305 * 60.75977 * 12 11 10 27 27 H 0.96702 * 114.00164 * 299.68096 * 15 13 12 28 28 H 0.96700 * 114.00311 * 180.02562 * 18 16 13 29 29 H 1.09003 * 109.45630 * 54.15194 * 19 10 9 30 30 H 1.09001 * 109.46370 * 294.18047 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2057 -3.6156 0.0005 11 6 2.9706 -3.6540 -1.2524 12 6 3.8470 -4.9082 -1.2785 13 6 4.7980 -4.8855 -0.0785 14 1 5.3950 -5.7974 -0.0684 15 8 5.6611 -3.7507 -0.1747 16 6 3.9776 -4.7968 1.2112 17 1 3.3484 -5.6819 1.3039 18 8 4.8593 -4.7186 2.3331 19 6 3.0975 -3.5456 1.1651 20 1 -0.4850 0.8401 -0.0004 21 1 0.6247 -2.5570 -0.8896 22 1 0.6242 -2.5567 0.8903 23 1 3.6023 -2.7681 -1.3195 24 1 2.2826 -3.6740 -2.0975 25 1 4.4264 -4.9283 -2.2016 26 1 3.2152 -5.7948 -1.2253 27 1 6.2116 -3.7415 -0.9696 28 1 4.4068 -4.6603 3.1857 29 1 2.5014 -3.4872 2.0759 30 1 3.7285 -2.6603 1.0867 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687697319.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:02 Heat of formation + Delta-G solvation = -129.451272 kcal Electronic energy + Delta-G solvation = -13760.724409 eV Core-core repulsion = 11361.472438 eV Total energy + Delta-G solvation = -2399.251970 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 201.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.53331 -37.33801 -36.95060 -34.74571 -32.45503 -30.54081 -28.52060 -25.70839 -23.92995 -22.82457 -20.79828 -18.66238 -18.21925 -17.66356 -16.83629 -16.33178 -16.10817 -15.81061 -15.17612 -14.72397 -13.94135 -13.78266 -13.65541 -13.16370 -12.96498 -12.87139 -12.45625 -12.36286 -12.19808 -11.90428 -11.77842 -11.15953 -11.03719 -10.63898 -10.60677 -9.07351 -8.19008 -6.38270 1.33213 1.34088 1.45555 2.34662 3.05403 3.09865 3.34049 3.56684 3.88254 4.06703 4.18568 4.28830 4.46634 4.70297 4.76962 4.88276 4.90316 5.10647 5.17369 5.25072 5.29712 5.35701 5.71183 6.01131 6.20371 6.45552 6.81695 6.85495 6.98831 7.33093 8.83369 Molecular weight = 201.12amu Principal moments of inertia in cm(-1) A = 0.041208 B = 0.010558 C = 0.010185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.310651 B = 2651.437745 C = 2748.572126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.013 3.987 3 Si 0.956 3.044 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.274 1.274 7 C -0.557 4.557 8 H 0.051 0.949 9 C 0.199 3.801 10 N -0.534 5.534 11 C 0.061 3.939 12 C -0.135 4.135 13 C 0.111 3.889 14 H 0.081 0.919 15 O -0.578 6.578 16 C 0.116 3.884 17 H 0.088 0.912 18 O -0.573 6.573 19 C 0.043 3.957 20 H 0.266 0.734 21 H 0.009 0.991 22 H 0.006 0.994 23 H 0.018 0.982 24 H 0.061 0.939 25 H 0.100 0.900 26 H 0.091 0.909 27 H 0.388 0.612 28 H 0.391 0.609 29 H 0.056 0.944 30 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.645 -9.955 -0.862 13.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.187 4.187 3 Si 0.781 3.219 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.199 1.199 7 C -0.596 4.596 8 H 0.069 0.931 9 C 0.073 3.927 10 N -0.259 5.259 11 C -0.067 4.067 12 C -0.173 4.173 13 C 0.053 3.947 14 H 0.099 0.901 15 O -0.385 6.385 16 C 0.057 3.943 17 H 0.106 0.894 18 O -0.380 6.380 19 C -0.086 4.086 20 H 0.075 0.925 21 H 0.027 0.973 22 H 0.024 0.976 23 H 0.036 0.964 24 H 0.079 0.921 25 H 0.118 0.882 26 H 0.110 0.890 27 H 0.236 0.764 28 H 0.240 0.760 29 H 0.074 0.926 30 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 8.393 -10.178 -0.717 13.212 hybrid contribution 0.164 1.923 -0.082 1.931 sum 8.557 -8.256 -0.799 11.917 Atomic orbital electron populations 1.70051 1.07399 1.27925 1.51045 1.25787 0.95642 1.02738 0.94493 0.85589 0.78526 0.79249 0.78540 1.19632 1.20228 1.19890 1.21964 0.93178 0.93161 1.51301 0.93123 1.19419 0.91114 0.86684 0.95530 1.62405 1.17161 1.44014 1.02315 1.21888 0.95582 0.97197 0.92063 1.22272 0.98115 0.98309 0.98597 1.21911 0.90596 0.89106 0.93124 0.90125 1.86626 1.57233 1.46327 1.48327 1.21919 0.89747 0.96501 0.86114 0.89382 1.86489 1.36995 1.97004 1.17509 1.22434 0.94377 0.97687 0.94110 0.92497 0.97252 0.97623 0.96355 0.92074 0.88188 0.89036 0.76363 0.76023 0.92556 0.96266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.82 13.29 21.45 0.28 -55.54 16 2 C 0.01 0.75 5.46 84.65 0.46 1.21 16 3 Si 0.96 45.38 29.54 68.60 2.03 47.41 16 4 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 5 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 6 H -0.27 -12.93 7.11 99.48 0.71 -12.22 16 7 C -0.56 -32.13 7.74 25.60 0.20 -31.93 16 8 H 0.05 2.98 5.84 -2.91 -0.02 2.96 16 9 C 0.20 10.78 5.13 85.56 0.44 11.22 16 10 N -0.53 -23.42 4.86 -900.92 -4.38 -27.80 16 11 C 0.06 2.35 5.00 86.32 0.43 2.78 16 12 C -0.14 -3.62 5.80 30.65 0.18 -3.44 16 13 C 0.11 3.16 3.50 30.67 0.11 3.27 16 14 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 15 O -0.58 -18.52 12.03 -138.26 -1.66 -20.18 16 16 C 0.12 3.70 3.41 30.64 0.10 3.81 16 17 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 18 O -0.57 -17.66 13.18 -138.26 -1.82 -19.48 16 19 C 0.04 1.77 4.50 86.33 0.39 2.16 16 20 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 21 H 0.01 0.54 8.06 -2.39 -0.02 0.52 16 22 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 23 H 0.02 0.80 6.65 -2.38 -0.02 0.79 16 24 H 0.06 2.36 8.06 -2.39 -0.02 2.34 16 25 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 26 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 27 H 0.39 8.47 9.09 -74.06 -0.67 7.80 16 28 H 0.39 8.80 9.08 -74.06 -0.67 8.13 16 29 H 0.06 2.32 8.12 -2.39 -0.02 2.30 16 30 H 0.02 0.93 6.19 -2.39 -0.01 0.92 16 Total: -1.00 -70.11 244.86 -3.44 -73.55 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -0.20 Total: 12.97 kcal Atomic # 6 Polarization: -13.23 SS G_CDS: 2.31 Total: -10.93 kcal Atomic # 7 Polarization: -79.24 SS G_CDS: -4.09 Total: -83.34 kcal Atomic # 8 Polarization: -36.18 SS G_CDS: -3.49 Total: -39.66 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -70.11 -3.44 -73.55 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687697319.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.906 kcal (2) G-P(sol) polarization free energy of solvation -70.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds