Wall clock time and date at job start Mon Mar 30 2020 02:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42905 * 114.00257 * 2 1 4 4 C 1.52998 * 109.47371 * 180.02562 * 3 2 1 5 5 O 1.42904 * 109.47182 * 64.99695 * 4 3 2 6 6 C 1.42899 * 113.99952 * 180.02562 * 5 4 3 7 7 C 1.53496 * 114.20673 * 210.00074 * 6 5 4 8 8 N 1.47062 * 87.98485 * 220.14963 * 7 6 5 9 9 C 1.36939 * 136.05593 * 207.08750 * 8 7 6 10 10 H 1.08008 * 119.99868 * 7.82597 * 9 8 7 11 11 C 1.38808 * 120.00203 * 187.82575 * 9 8 7 12 12 N 1.31618 * 119.99998 * 195.17052 * 11 9 8 13 13 Si 1.86797 * 119.99840 * 15.16580 * 11 9 8 14 14 H 1.48503 * 109.47450 * 270.00422 * 13 11 9 15 15 H 1.48503 * 109.47360 * 30.00092 * 13 11 9 16 16 H 1.48498 * 109.47360 * 150.00270 * 13 11 9 17 17 C 1.47059 * 87.88616 * 27.34176 * 8 7 6 18 18 H 1.08996 * 109.46561 * 300.00163 * 1 2 3 19 19 H 1.08993 * 109.46795 * 59.99747 * 1 2 3 20 20 H 1.08998 * 109.46843 * 179.97438 * 1 2 3 21 21 H 1.09005 * 109.46848 * 59.99760 * 3 2 1 22 22 H 1.09005 * 109.46895 * 300.00069 * 3 2 1 23 23 H 1.09004 * 109.46642 * 304.99750 * 4 3 2 24 24 H 1.08993 * 109.46899 * 185.00094 * 4 3 2 25 25 H 1.09001 * 113.27880 * 343.07049 * 6 5 4 26 26 H 1.09008 * 113.46447 * 105.36397 * 7 6 5 27 27 H 1.08996 * 113.51824 * 334.94207 * 7 6 5 28 28 H 0.96995 * 120.00365 * 354.90363 * 12 11 9 29 29 H 1.08997 * 113.47135 * 87.43718 * 17 8 7 30 30 H 1.09007 * 113.47198 * 217.88025 * 17 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5356 1.1847 -0.0006 5 8 3.9650 0.5796 -1.2220 6 6 5.3812 0.4191 -1.3246 7 6 5.9191 0.4796 -2.7609 8 7 6.8325 -0.6182 -2.4099 9 6 8.0584 -1.0551 -2.8357 10 1 8.6298 -0.4628 -3.5352 11 6 8.5668 -2.2593 -2.3685 12 7 9.8424 -2.5415 -2.5287 13 14 7.4407 -3.4792 -1.5124 14 1 7.4295 -3.2030 -0.0534 15 1 6.0637 -3.3448 -2.0521 16 1 7.9333 -4.8596 -1.7512 17 6 5.8472 -1.0440 -1.4047 18 1 -0.3632 0.5139 0.8900 19 1 -0.3633 0.5138 -0.8899 20 1 -0.3633 -1.0277 -0.0005 21 1 1.6887 1.8464 0.8900 22 1 1.6887 1.8464 -0.8900 23 1 3.8515 0.5682 0.8410 24 1 3.9786 2.1765 0.0889 25 1 5.9367 1.0302 -0.6131 26 1 6.4314 1.4132 -2.9936 27 1 5.1802 0.2055 -3.5139 28 1 10.4115 -1.9429 -3.0373 29 1 5.0887 -1.7200 -1.7994 30 1 6.2983 -1.4085 -0.4817 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687714416.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:31 Heat of formation + Delta-G solvation = -26.144952 kcal Electronic energy + Delta-G solvation = -13036.010866 eV Core-core repulsion = 10641.238594 eV Total energy + Delta-G solvation = -2394.772272 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 201.115 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.93711 -37.88450 -35.90473 -32.28038 -30.16695 -27.55698 -26.29899 -25.18282 -22.69119 -22.27741 -19.57993 -17.41317 -16.94764 -16.67655 -15.61628 -15.47419 -15.00733 -14.49293 -13.62340 -13.38805 -13.26029 -12.68516 -12.19958 -11.81202 -11.62000 -11.30387 -11.13521 -10.87950 -10.54141 -10.17748 -9.79480 -9.72811 -9.23012 -8.77071 -8.64245 -7.14416 -6.28075 -3.19901 3.48108 3.56846 3.70230 3.70900 3.90512 4.64300 4.93103 4.96960 5.10110 5.20190 5.23796 5.26486 5.34497 5.46187 5.49917 5.55198 5.60783 5.78105 6.28582 6.37479 6.43793 6.45336 6.71717 7.08181 7.15888 7.68374 8.26635 9.00558 9.53676 10.41148 11.22346 Molecular weight = 201.12amu Principal moments of inertia in cm(-1) A = 0.053929 B = 0.007933 C = 0.007217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.071754 B = 3528.840207 C = 3878.711429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.381 6.381 3 C 0.064 3.936 4 C 0.062 3.938 5 O -0.369 6.369 6 C 0.042 3.958 7 C 0.120 3.880 8 N -0.621 5.621 9 C -0.303 4.303 10 H 0.083 0.917 11 C -0.023 4.023 12 N -0.931 5.931 13 Si 1.061 2.939 14 H -0.293 1.293 15 H -0.279 1.279 16 H -0.295 1.295 17 C 0.088 3.912 18 H 0.037 0.963 19 H 0.040 0.960 20 H 0.085 0.915 21 H 0.060 0.940 22 H 0.056 0.944 23 H 0.056 0.944 24 H 0.062 0.938 25 H 0.091 0.909 26 H 0.047 0.953 27 H 0.044 0.956 28 H 0.261 0.739 29 H 0.054 0.946 30 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.827 8.177 6.321 19.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.300 6.300 3 C -0.013 4.013 4 C -0.016 4.016 5 O -0.287 6.287 6 C -0.016 4.016 7 C -0.007 4.007 8 N -0.351 5.351 9 C -0.429 4.429 10 H 0.101 0.899 11 C -0.222 4.222 12 N -0.574 5.574 13 Si 0.892 3.108 14 H -0.221 1.221 15 H -0.205 1.205 16 H -0.222 1.222 17 C -0.038 4.038 18 H 0.056 0.944 19 H 0.058 0.942 20 H 0.103 0.897 21 H 0.078 0.922 22 H 0.075 0.925 23 H 0.075 0.925 24 H 0.080 0.920 25 H 0.109 0.891 26 H 0.065 0.935 27 H 0.062 0.938 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -16.626 6.418 6.862 19.097 hybrid contribution -0.057 1.752 -0.698 1.887 sum -16.683 8.170 6.163 19.572 Atomic orbital electron populations 1.22728 0.81478 1.02740 0.99598 1.88016 1.19231 1.27414 1.95295 1.22587 0.92912 0.85332 1.00452 1.22507 0.92786 0.97448 0.88819 1.87964 1.22606 1.81336 1.36776 1.24500 0.79632 0.98158 0.99355 1.22534 0.91588 0.93010 0.93579 1.45894 1.15703 1.32596 1.40934 1.20110 0.89565 1.05102 1.28149 0.89930 1.25794 0.98487 0.96848 1.01052 1.70912 1.03164 1.42139 1.41140 0.83800 0.75071 0.76180 0.75755 1.22108 1.20544 1.22210 1.23163 0.91770 0.95130 0.93704 0.94415 0.94153 0.89682 0.92209 0.92527 0.92523 0.91982 0.89095 0.93454 0.93814 0.92878 0.92804 0.93132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 101.05 1.11 1.41 16 2 O -0.38 -5.27 10.67 -40.08 -0.43 -5.70 16 3 C 0.06 0.73 6.32 37.16 0.23 0.97 16 4 C 0.06 0.82 6.16 37.16 0.23 1.05 16 5 O -0.37 -6.52 10.36 -40.08 -0.42 -6.94 16 6 C 0.04 0.82 4.68 -26.08 -0.12 0.69 16 7 C 0.12 2.56 8.52 -8.52 -0.07 2.49 16 8 N -0.62 -16.27 3.62 -184.66 -0.67 -16.94 16 9 C -0.30 -9.08 11.03 -15.06 -0.17 -9.24 16 10 H 0.08 2.57 8.06 -52.48 -0.42 2.14 16 11 C -0.02 -0.70 5.50 -17.43 -0.10 -0.79 16 12 N -0.93 -30.03 13.70 55.49 0.76 -29.27 16 13 Si 1.06 27.78 25.50 -169.99 -4.34 23.44 16 14 H -0.29 -7.35 6.97 56.52 0.39 -6.96 16 15 H -0.28 -6.96 5.66 56.52 0.32 -6.64 16 16 H -0.29 -7.71 7.11 56.52 0.40 -7.31 16 17 C 0.09 2.04 5.46 -8.39 -0.05 1.99 16 18 H 0.04 0.29 8.14 -51.93 -0.42 -0.14 16 19 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 20 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 21 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 22 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 23 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 25 H 0.09 1.60 7.88 -51.93 -0.41 1.19 16 26 H 0.05 0.95 8.14 -51.92 -0.42 0.53 16 27 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.26 8.27 8.73 -40.82 -0.36 7.92 16 29 H 0.05 1.28 7.02 -51.93 -0.36 0.91 16 30 H 0.05 1.18 6.22 -51.93 -0.32 0.85 16 LS Contribution 253.46 15.07 3.82 3.82 Total: -1.00 -34.15 253.46 -4.76 -38.91 By element: Atomic # 1 Polarization: -1.33 SS G_CDS: -4.57 Total: -5.90 kcal Atomic # 6 Polarization: -2.50 SS G_CDS: 1.07 Total: -1.43 kcal Atomic # 7 Polarization: -46.30 SS G_CDS: 0.09 Total: -46.21 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: -0.84 Total: -12.64 kcal Atomic # 14 Polarization: 27.78 SS G_CDS: -4.34 Total: 23.44 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -34.15 -4.76 -38.91 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687714416.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.764 kcal (2) G-P(sol) polarization free energy of solvation -34.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds