Wall clock time and date at job start Mon Mar 30 2020 02:29:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86797 * 120.00338 * 2 1 4 4 H 1.48492 * 109.47084 * 239.99498 * 3 2 1 5 5 H 1.48498 * 109.46831 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47190 * 119.99284 * 3 2 1 7 7 C 1.38814 * 119.99550 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99594 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00145 * 0.02562 * 7 2 1 10 10 C 1.47018 * 125.64899 * 359.97438 * 9 7 2 11 11 C 1.54325 * 107.40412 * 178.89496 * 10 9 7 12 12 C 1.55405 * 102.82616 * 337.97548 * 11 10 9 13 13 C 1.53000 * 110.89394 * 277.26684 * 12 11 10 14 14 O 1.42898 * 109.47040 * 173.68696 * 13 12 11 15 15 C 1.52998 * 111.06990 * 153.48436 * 12 11 10 16 16 O 1.42905 * 109.47211 * 186.20819 * 15 12 11 17 17 C 1.47426 * 125.64583 * 180.02562 * 9 7 2 18 18 H 0.97004 * 119.99606 * 0.02562 * 1 2 3 19 19 H 1.09002 * 109.88241 * 298.39024 * 10 9 7 20 20 H 1.09000 * 109.88049 * 59.40154 * 10 9 7 21 21 H 1.09000 * 110.72188 * 96.24097 * 11 10 9 22 22 H 1.09002 * 110.72265 * 219.52294 * 11 10 9 23 23 H 1.09000 * 109.46711 * 293.68751 * 13 12 11 24 24 H 1.08996 * 109.47179 * 53.68650 * 13 12 11 25 25 H 0.96702 * 113.99714 * 179.97438 * 14 13 12 26 26 H 1.08997 * 109.47394 * 306.20721 * 15 12 11 27 27 H 1.08994 * 109.47153 * 66.21219 * 15 12 11 28 28 H 0.96699 * 113.99979 * 179.97438 * 16 15 12 29 29 H 1.08999 * 110.36956 * 322.94042 * 17 9 7 30 30 H 1.09003 * 110.36599 * 85.25946 * 17 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6962 -1.2124 5 1 1.2853 2.7464 -0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0101 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 -0.1376 -2.5327 0.0005 11 6 -0.4522 -4.0433 -0.0279 12 6 0.8517 -4.6563 -0.6104 13 6 0.8587 -4.5727 -2.1381 14 8 2.1268 -5.0074 -2.6331 15 6 1.0372 -6.1010 -0.1423 16 8 2.3108 -6.5825 -0.5763 17 6 1.9333 -3.7312 0.0016 18 1 -0.4850 0.8401 -0.0004 19 1 -0.5545 -2.0842 0.9023 20 1 -0.5578 -2.0500 -0.8818 21 1 -0.6373 -4.4177 0.9789 22 1 -1.3019 -4.2482 -0.6791 23 1 0.0730 -5.2120 -2.5406 24 1 0.6822 -3.5422 -2.4464 25 1 2.2029 -4.9811 -3.5967 26 1 0.9857 -6.1399 0.9457 27 1 0.2497 -6.7242 -0.5659 28 1 2.4967 -7.4945 -0.3139 29 1 2.8331 -3.7409 -0.6135 30 1 2.1658 -4.0415 1.0203 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000694726208.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:44 Heat of formation + Delta-G solvation = -73.017767 kcal Electronic energy + Delta-G solvation = -13816.818156 eV Core-core repulsion = 11420.013326 eV Total energy + Delta-G solvation = -2396.804830 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 201.115 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.66247 -35.77494 -35.46981 -32.66429 -29.98465 -28.23872 -25.36475 -25.28898 -23.06889 -20.10249 -18.43640 -17.20647 -16.49267 -16.35847 -15.13825 -14.79687 -14.46124 -13.66575 -13.20999 -12.69349 -12.38550 -12.15377 -11.76886 -11.49832 -10.91456 -10.78352 -10.56415 -10.23902 -10.09157 -9.95300 -9.77588 -9.57851 -9.43616 -9.22237 -8.52196 -6.72683 -5.63591 -2.95283 3.46042 3.49603 3.51304 4.52505 4.57450 4.81058 5.30873 5.49555 5.53598 5.59434 5.70124 5.80927 5.91016 6.01604 6.17771 6.21637 6.44350 6.56888 6.70370 6.99677 7.07602 7.63231 7.65497 7.87846 8.03744 8.21771 8.34723 9.31260 9.91776 10.58934 11.48723 Molecular weight = 201.12amu Principal moments of inertia in cm(-1) A = 0.052165 B = 0.010310 C = 0.009754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.634499 B = 2715.115492 C = 2869.853622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.012 4.012 3 Si 0.912 3.088 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.220 4.220 8 H 0.077 0.923 9 N -0.607 5.607 10 C 0.178 3.822 11 C -0.133 4.133 12 C -0.075 4.075 13 C 0.103 3.897 14 O -0.550 6.550 15 C 0.098 3.902 16 O -0.547 6.547 17 C 0.158 3.842 18 H 0.251 0.749 19 H 0.043 0.957 20 H 0.046 0.954 21 H 0.062 0.938 22 H 0.062 0.938 23 H 0.028 0.972 24 H 0.054 0.946 25 H 0.362 0.638 26 H 0.040 0.960 27 H 0.034 0.966 28 H 0.361 0.639 29 H 0.052 0.948 30 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.594 -11.201 -2.354 11.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.208 4.208 3 Si 0.742 3.258 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.349 4.349 8 H 0.095 0.905 9 N -0.333 5.333 10 C 0.053 3.947 11 C -0.171 4.171 12 C -0.076 4.076 13 C 0.025 3.975 14 O -0.353 6.353 15 C 0.020 3.980 16 O -0.350 6.350 17 C 0.032 3.968 18 H 0.061 0.939 19 H 0.061 0.939 20 H 0.064 0.936 21 H 0.081 0.919 22 H 0.080 0.920 23 H 0.046 0.954 24 H 0.072 0.928 25 H 0.206 0.794 26 H 0.058 0.942 27 H 0.053 0.947 28 H 0.205 0.795 29 H 0.070 0.930 30 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges -0.500 -10.414 -1.952 10.607 hybrid contribution 0.091 0.405 -0.292 0.508 sum -0.408 -10.008 -2.244 10.265 Atomic orbital electron populations 1.69948 1.04830 1.24934 1.57793 1.24780 0.95728 0.97563 1.02704 0.86191 0.78407 0.83266 0.77890 1.21253 1.21694 1.21247 1.19050 0.90464 0.82468 1.42911 0.90541 1.44514 1.01512 1.00203 1.87105 1.21125 0.84789 0.87703 1.01070 1.22964 0.94854 0.99802 0.99510 1.21825 0.98349 0.93195 0.94224 1.21880 0.84509 0.97890 0.93201 1.86672 1.34700 1.89361 1.24526 1.22043 0.85028 0.94210 0.96744 1.86774 1.35883 1.31981 1.80312 1.21397 0.94569 0.84657 0.96217 0.93863 0.93919 0.93625 0.91886 0.91963 0.95364 0.92821 0.79364 0.94196 0.94744 0.79452 0.92994 0.96846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.82 10.31 55.49 0.57 -27.25 16 2 C -0.01 -0.36 5.49 -17.43 -0.10 -0.45 16 3 Si 0.91 22.80 29.55 -169.99 -5.02 17.78 16 4 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 7 C -0.22 -6.44 10.28 -15.06 -0.15 -6.59 16 8 H 0.08 2.18 7.83 -52.48 -0.41 1.77 16 9 N -0.61 -16.33 3.38 -170.06 -0.58 -16.91 16 10 C 0.18 4.43 4.98 -3.07 -0.02 4.42 16 11 C -0.13 -2.54 5.94 -24.76 -0.15 -2.68 16 12 C -0.07 -1.42 0.61 -152.22 -0.09 -1.52 16 13 C 0.10 1.88 5.99 37.16 0.22 2.10 16 14 O -0.55 -9.85 11.33 -55.36 -0.63 -10.48 16 15 C 0.10 1.54 6.00 37.16 0.22 1.76 16 16 O -0.55 -8.71 11.76 -55.36 -0.65 -9.36 16 17 C 0.16 3.66 5.88 -2.52 -0.01 3.65 16 18 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 19 H 0.04 1.17 7.51 -51.93 -0.39 0.78 16 20 H 0.05 1.24 7.37 -51.93 -0.38 0.86 16 21 H 0.06 1.11 8.02 -51.93 -0.42 0.69 16 22 H 0.06 1.04 8.05 -51.93 -0.42 0.63 16 23 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.05 1.11 7.81 -51.93 -0.41 0.70 16 25 H 0.36 4.74 9.12 45.56 0.42 5.15 16 26 H 0.04 0.59 8.12 -51.93 -0.42 0.17 16 27 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.36 3.81 9.12 45.56 0.42 4.22 16 29 H 0.05 1.29 7.48 -51.93 -0.39 0.90 16 30 H 0.01 0.32 8.04 -51.93 -0.42 -0.10 16 LS Contribution 245.87 15.07 3.71 3.71 Total: -1.00 -33.70 245.87 -5.48 -39.17 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -2.80 Total: 2.65 kcal Atomic # 6 Polarization: 0.76 SS G_CDS: -0.08 Total: 0.68 kcal Atomic # 7 Polarization: -44.15 SS G_CDS: 0.00 Total: -44.15 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: -1.28 Total: -19.84 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -5.02 Total: 17.78 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -33.70 -5.48 -39.17 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694726208.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.844 kcal (2) G-P(sol) polarization free energy of solvation -33.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds