Wall clock time and date at job start Mon Mar 30 2020 02:29:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86797 * 120.00338 * 2 1 4 4 H 1.48492 * 109.47084 * 239.99498 * 3 2 1 5 5 H 1.48498 * 109.46831 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47190 * 119.99284 * 3 2 1 7 7 C 1.38814 * 119.99550 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99594 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00145 * 0.02562 * 7 2 1 10 10 C 1.47018 * 125.64899 * 359.97438 * 9 7 2 11 11 C 1.54325 * 107.40412 * 178.89496 * 10 9 7 12 12 C 1.55405 * 102.82616 * 337.97548 * 11 10 9 13 13 C 1.53000 * 110.89394 * 277.26684 * 12 11 10 14 14 O 1.42898 * 109.47040 * 173.68696 * 13 12 11 15 15 C 1.52998 * 111.06990 * 153.48436 * 12 11 10 16 16 O 1.42905 * 109.47211 * 186.20819 * 15 12 11 17 17 C 1.47426 * 125.64583 * 180.02562 * 9 7 2 18 18 H 0.97004 * 119.99606 * 0.02562 * 1 2 3 19 19 H 1.09002 * 109.88241 * 298.39024 * 10 9 7 20 20 H 1.09000 * 109.88049 * 59.40154 * 10 9 7 21 21 H 1.09000 * 110.72188 * 96.24097 * 11 10 9 22 22 H 1.09002 * 110.72265 * 219.52294 * 11 10 9 23 23 H 1.09000 * 109.46711 * 293.68751 * 13 12 11 24 24 H 1.08996 * 109.47179 * 53.68650 * 13 12 11 25 25 H 0.96702 * 113.99714 * 179.97438 * 14 13 12 26 26 H 1.08997 * 109.47394 * 306.20721 * 15 12 11 27 27 H 1.08994 * 109.47153 * 66.21219 * 15 12 11 28 28 H 0.96699 * 113.99979 * 179.97438 * 16 15 12 29 29 H 1.08999 * 110.36956 * 322.94042 * 17 9 7 30 30 H 1.09003 * 110.36599 * 85.25946 * 17 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6962 -1.2124 5 1 1.2853 2.7464 -0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0101 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 -0.1376 -2.5327 0.0005 11 6 -0.4522 -4.0433 -0.0279 12 6 0.8517 -4.6563 -0.6104 13 6 0.8587 -4.5727 -2.1381 14 8 2.1268 -5.0074 -2.6331 15 6 1.0372 -6.1010 -0.1423 16 8 2.3108 -6.5825 -0.5763 17 6 1.9333 -3.7312 0.0016 18 1 -0.4850 0.8401 -0.0004 19 1 -0.5545 -2.0842 0.9023 20 1 -0.5578 -2.0500 -0.8818 21 1 -0.6373 -4.4177 0.9789 22 1 -1.3019 -4.2482 -0.6791 23 1 0.0730 -5.2120 -2.5406 24 1 0.6822 -3.5422 -2.4464 25 1 2.2029 -4.9811 -3.5967 26 1 0.9857 -6.1399 0.9457 27 1 0.2497 -6.7242 -0.5659 28 1 2.4967 -7.4945 -0.3139 29 1 2.8331 -3.7409 -0.6135 30 1 2.1658 -4.0415 1.0203 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000694726208.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:44 Heat of formation + Delta-G solvation = -100.508156 kcal Electronic energy + Delta-G solvation = -13818.010228 eV Core-core repulsion = 11420.013326 eV Total energy + Delta-G solvation = -2397.996902 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 201.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.24432 -37.24499 -36.85016 -34.61263 -31.93021 -29.99268 -27.34056 -26.63865 -24.83653 -22.05122 -19.99908 -18.93662 -18.04016 -17.74872 -16.87724 -16.42527 -16.21653 -15.53745 -14.63247 -14.22427 -14.06527 -13.83386 -13.68416 -13.13790 -12.85497 -12.68355 -12.24165 -12.07439 -11.87478 -11.78886 -11.53380 -11.30784 -10.73594 -10.64623 -10.62799 -8.88733 -7.85798 -5.20422 1.43439 1.47355 1.53745 2.49069 3.21382 3.30981 3.52301 3.78088 3.93598 4.11264 4.27908 4.45968 4.55605 4.61379 4.63361 4.71053 4.85964 4.99933 5.13781 5.21546 5.35302 5.42727 5.65617 5.75276 6.19955 7.04951 7.10943 7.16039 7.77851 8.42983 9.24521 Molecular weight = 201.12amu Principal moments of inertia in cm(-1) A = 0.052165 B = 0.010310 C = 0.009754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.634499 B = 2715.115492 C = 2869.853622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.065 4.065 3 Si 0.979 3.021 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.245 4.245 8 H 0.073 0.927 9 N -0.627 5.627 10 C 0.184 3.816 11 C -0.117 4.117 12 C -0.071 4.071 13 C 0.107 3.893 14 O -0.565 6.565 15 C 0.104 3.896 16 O -0.570 6.570 17 C 0.157 3.843 18 H 0.248 0.752 19 H 0.008 0.992 20 H 0.013 0.987 21 H 0.083 0.917 22 H 0.092 0.908 23 H 0.065 0.935 24 H 0.018 0.982 25 H 0.382 0.618 26 H 0.050 0.950 27 H 0.067 0.933 28 H 0.386 0.614 29 H 0.029 0.971 30 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.690 -12.732 -2.564 13.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.258 4.258 3 Si 0.807 3.193 4 H -0.205 1.205 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.374 4.374 8 H 0.091 0.909 9 N -0.353 5.353 10 C 0.059 3.941 11 C -0.155 4.155 12 C -0.073 4.073 13 C 0.029 3.971 14 O -0.371 6.371 15 C 0.026 3.974 16 O -0.377 6.377 17 C 0.032 3.968 18 H 0.057 0.943 19 H 0.026 0.974 20 H 0.031 0.969 21 H 0.101 0.899 22 H 0.111 0.889 23 H 0.083 0.917 24 H 0.036 0.964 25 H 0.229 0.771 26 H 0.068 0.932 27 H 0.085 0.915 28 H 0.234 0.766 29 H 0.047 0.953 30 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges -0.577 -11.993 -2.171 12.201 hybrid contribution 0.178 0.856 -0.248 0.908 sum -0.399 -11.137 -2.419 11.404 Atomic orbital electron populations 1.70170 1.06126 1.25353 1.58283 1.25633 0.96719 1.00864 1.02567 0.85141 0.77195 0.78762 0.78178 1.20450 1.21560 1.20381 1.19386 0.90780 0.84053 1.43195 0.90882 1.44808 1.02590 1.01003 1.86910 1.20919 0.83584 0.91755 0.97804 1.22821 0.96038 0.94995 1.01610 1.21841 0.95993 0.94742 0.94678 1.21799 0.85718 0.96699 0.92840 1.86619 1.34736 1.89095 1.26630 1.21944 0.86035 0.91960 0.97443 1.86702 1.36060 1.34230 1.80678 1.21455 0.95240 0.84217 0.95922 0.94307 0.97405 0.96876 0.89855 0.88923 0.91741 0.96389 0.77064 0.93187 0.91457 0.76625 0.95282 0.97096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.63 10.31 21.65 0.22 -58.40 16 2 C -0.06 -3.86 5.49 84.86 0.47 -3.39 16 3 Si 0.98 47.54 29.55 68.60 2.03 49.57 16 4 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 5 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 6 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 7 C -0.25 -14.70 10.28 84.03 0.86 -13.84 16 8 H 0.07 4.28 7.83 -2.91 -0.02 4.26 16 9 N -0.63 -34.55 3.38 -691.94 -2.34 -36.89 16 10 C 0.18 9.37 4.98 86.73 0.43 9.81 16 11 C -0.12 -4.22 5.94 31.87 0.19 -4.03 16 12 C -0.07 -2.58 0.61 -50.70 -0.03 -2.61 16 13 C 0.11 3.71 5.99 71.98 0.43 4.14 16 14 O -0.57 -19.25 11.33 -129.73 -1.47 -20.72 16 15 C 0.10 2.87 6.00 71.98 0.43 3.31 16 16 O -0.57 -16.34 11.76 -129.73 -1.53 -17.86 16 17 C 0.16 7.30 5.88 86.86 0.51 7.81 16 18 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 19 H 0.01 0.44 7.51 -2.39 -0.02 0.42 16 20 H 0.01 0.74 7.37 -2.39 -0.02 0.72 16 21 H 0.08 2.69 8.02 -2.39 -0.02 2.67 16 22 H 0.09 2.81 8.05 -2.39 -0.02 2.79 16 23 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 24 H 0.02 0.74 7.81 -2.39 -0.02 0.72 16 25 H 0.38 9.30 9.12 -74.06 -0.68 8.62 16 26 H 0.05 1.28 8.12 -2.39 -0.02 1.26 16 27 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.39 6.73 9.12 -74.06 -0.68 6.06 16 29 H 0.03 1.46 7.48 -2.39 -0.02 1.44 16 30 H 0.01 0.52 8.04 -2.39 -0.02 0.50 16 Total: -1.00 -74.31 245.87 0.00 -74.31 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -0.21 Total: 8.79 kcal Atomic # 6 Polarization: -2.09 SS G_CDS: 3.29 Total: 1.20 kcal Atomic # 7 Polarization: -93.17 SS G_CDS: -2.12 Total: -95.29 kcal Atomic # 8 Polarization: -35.59 SS G_CDS: -3.00 Total: -38.59 kcal Atomic # 14 Polarization: 47.54 SS G_CDS: 2.03 Total: 49.57 kcal Total: -74.31 0.00 -74.31 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694726208.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.196 kcal (2) G-P(sol) polarization free energy of solvation -74.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds