Wall clock time and date at job start Mon Mar 30 2020 02:46:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 109.47170 * 2 1 4 4 C 1.53001 * 109.46803 * 239.99610 * 2 1 3 5 5 C 1.50701 * 109.46829 * 175.00160 * 4 2 1 6 6 H 1.07992 * 120.00048 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99608 * 180.02562 * 5 4 2 8 8 N 1.31518 * 119.99602 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 120.00157 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.47395 * 90.00215 * 9 7 5 11 11 H 1.48504 * 109.46885 * 209.99822 * 9 7 5 12 12 H 1.48499 * 109.47244 * 329.99887 * 9 7 5 13 13 N 1.46904 * 109.47008 * 120.00092 * 2 1 3 14 14 C 1.47795 * 110.99690 * 304.99822 * 13 2 1 15 15 C 1.54593 * 105.32386 * 236.47379 * 14 13 2 16 16 H 1.08999 * 110.81337 * 97.22887 * 15 14 13 17 17 O 1.42902 * 110.80680 * 220.74121 * 15 14 13 18 18 C 1.55168 * 102.38899 * 339.03705 * 15 14 13 19 19 O 1.44570 * 102.72663 * 36.38892 * 18 15 14 20 20 H 1.08996 * 109.47234 * 59.99745 * 1 2 3 21 21 H 1.08999 * 109.47496 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.46988 * 300.00593 * 1 2 3 23 23 H 1.08999 * 109.47278 * 295.00218 * 4 2 1 24 24 H 1.09001 * 109.46968 * 55.00457 * 4 2 1 25 25 H 0.97001 * 119.99701 * 179.97438 * 8 7 5 26 26 H 1.09002 * 110.29213 * 355.46275 * 14 13 2 27 27 H 1.08999 * 110.28833 * 117.48613 * 14 13 2 28 28 H 0.96705 * 114.00006 * 179.97438 * 17 15 14 29 29 H 1.09002 * 110.69860 * 278.09138 * 18 15 14 30 30 H 1.09005 * 110.78755 * 154.72798 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5419 -0.6151 -1.3127 6 1 4.0789 -0.0863 -0.5392 7 6 4.2302 -1.1929 -2.3583 8 7 5.5409 -1.0997 -2.4140 9 14 3.3011 -2.1068 -3.6966 10 1 2.9405 -1.1610 -4.7831 11 1 4.1594 -3.1872 -4.2455 12 1 2.0650 -2.6988 -3.1250 13 7 2.0197 -0.6925 1.1995 14 6 1.4501 -0.0952 2.4255 15 6 2.6684 0.3134 3.2849 16 1 2.9003 1.3699 3.1504 17 8 2.4405 0.0137 4.6635 18 6 3.7988 -0.5772 2.7047 19 8 3.4852 -0.6109 1.2938 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 1.7516 -1.7716 -1.2055 24 1 1.6053 -0.2618 -2.1370 25 1 6.0252 -1.5065 -3.1494 26 1 0.8522 0.7815 2.1763 27 1 0.8422 -0.8282 2.9558 28 1 3.1762 0.2511 5.2444 29 1 3.7590 -1.5784 3.1336 30 1 4.7749 -0.1219 2.8730 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695886359.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:29 Heat of formation + Delta-G solvation = -35.844565 kcal Electronic energy + Delta-G solvation = -13629.472371 eV Core-core repulsion = 11234.279493 eV Total energy + Delta-G solvation = -2395.192879 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 201.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.87776 -36.29164 -34.48831 -32.37631 -30.58662 -28.38908 -27.67028 -24.10661 -22.41691 -21.10189 -19.49110 -17.63944 -16.64380 -16.29644 -15.06108 -14.54230 -14.16061 -13.89890 -13.66373 -13.31466 -12.36118 -12.26908 -11.92620 -11.70842 -11.58975 -11.35079 -11.18232 -10.76971 -10.57077 -10.33401 -9.80405 -9.47613 -9.39212 -8.89830 -8.36233 -7.89030 -5.84548 -3.78227 3.39939 3.45339 3.48486 3.52813 4.02657 4.60095 4.72082 4.91245 5.06285 5.35746 5.53814 5.60121 5.62067 5.80503 5.88583 5.92881 6.01797 6.08041 6.26561 6.55150 6.69440 6.97827 7.27152 7.44880 7.53839 7.62950 7.96531 8.76704 9.32570 9.77896 11.29188 Molecular weight = 201.12amu Principal moments of inertia in cm(-1) A = 0.045718 B = 0.010787 C = 0.009104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.305446 B = 2595.203252 C = 3074.840917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.068 3.932 3 H 0.047 0.953 4 C -0.004 4.004 5 C -0.495 4.495 6 H 0.089 0.911 7 C 0.062 3.938 8 N -0.909 5.909 9 Si 0.873 3.127 10 H -0.281 1.281 11 H -0.290 1.290 12 H -0.266 1.266 13 N -0.324 5.324 14 C 0.003 3.997 15 C 0.065 3.935 16 H 0.069 0.931 17 O -0.558 6.558 18 C -0.006 4.006 19 O -0.179 6.179 20 H 0.065 0.935 21 H 0.062 0.938 22 H 0.048 0.952 23 H 0.026 0.974 24 H 0.017 0.983 25 H 0.259 0.741 26 H 0.069 0.931 27 H 0.097 0.903 28 H 0.379 0.621 29 H 0.069 0.931 30 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.442 3.183 10.202 13.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.040 4.040 3 H 0.066 0.934 4 C -0.042 4.042 5 C -0.533 4.533 6 H 0.107 0.893 7 C -0.137 4.137 8 N -0.549 5.549 9 Si 0.701 3.299 10 H -0.207 1.207 11 H -0.216 1.216 12 H -0.191 1.191 13 N -0.092 5.092 14 C -0.125 4.125 15 C 0.004 3.996 16 H 0.087 0.913 17 O -0.363 6.363 18 C -0.086 4.086 19 O -0.183 6.183 20 H 0.084 0.916 21 H 0.082 0.918 22 H 0.067 0.933 23 H 0.044 0.956 24 H 0.035 0.965 25 H 0.068 0.932 26 H 0.087 0.913 27 H 0.116 0.884 28 H 0.226 0.774 29 H 0.087 0.913 30 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -7.849 2.394 9.607 12.634 hybrid contribution 0.372 0.615 -0.302 0.780 sum -7.477 3.009 9.305 12.310 Atomic orbital electron populations 1.21975 0.94875 1.02417 1.01218 1.22131 0.92999 0.97012 0.91866 0.93444 1.19604 0.97985 0.95978 0.90622 1.21285 0.89425 1.34090 1.08480 0.89321 1.24987 0.94686 0.96139 0.97866 1.69918 1.06444 1.46286 1.32272 0.86887 0.80407 0.80055 0.82551 1.20706 1.21632 1.19090 1.70493 0.90140 1.47431 1.01138 1.23673 0.96433 1.00229 0.92207 1.23843 0.95351 0.98310 0.82064 0.91301 1.86488 1.45530 1.87118 1.17183 1.24387 0.97899 0.99616 0.86659 1.92406 1.11418 1.96564 1.17959 0.91630 0.91847 0.93332 0.95561 0.96514 0.93172 0.91269 0.88447 0.77366 0.91260 0.89108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 8.97 37.16 0.33 -2.01 16 2 C 0.07 1.41 2.38 -67.71 -0.16 1.25 16 3 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 4 C 0.00 -0.11 3.72 -27.88 -0.10 -0.21 16 5 C -0.49 -14.50 8.55 -34.44 -0.29 -14.79 16 6 H 0.09 2.80 5.87 -52.49 -0.31 2.50 16 7 C 0.06 1.88 5.47 -17.82 -0.10 1.79 16 8 N -0.91 -28.94 13.96 55.43 0.77 -28.17 16 9 Si 0.87 22.48 27.47 -169.99 -4.67 17.81 16 10 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 11 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 12 H -0.27 -6.62 6.54 56.52 0.37 -6.25 16 13 N -0.32 -6.63 5.64 -105.14 -0.59 -7.22 16 14 C 0.00 0.05 6.07 -2.49 -0.02 0.04 16 15 C 0.06 0.94 4.50 -24.75 -0.11 0.83 16 16 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 17 O -0.56 -7.03 13.41 -35.23 -0.47 -7.50 16 18 C -0.01 -0.11 7.68 38.31 0.29 0.19 16 19 O -0.18 -4.10 8.63 -14.37 -0.12 -4.23 16 20 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 21 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 22 H 0.05 0.66 6.23 -51.93 -0.32 0.33 16 23 H 0.03 0.67 7.20 -51.93 -0.37 0.30 16 24 H 0.02 0.40 7.57 -51.93 -0.39 0.01 16 25 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 26 H 0.07 1.00 6.08 -51.93 -0.32 0.69 16 27 H 0.10 1.51 8.07 -51.93 -0.42 1.09 16 28 H 0.38 2.94 9.12 45.56 0.42 3.36 16 29 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 244.48 15.07 3.68 3.68 Total: -1.00 -33.97 244.48 -4.98 -38.95 By element: Atomic # 1 Polarization: 3.02 SS G_CDS: -3.42 Total: -0.40 kcal Atomic # 6 Polarization: -12.77 SS G_CDS: -0.16 Total: -12.92 kcal Atomic # 7 Polarization: -35.57 SS G_CDS: 0.18 Total: -35.39 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: -0.60 Total: -11.73 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -4.67 Total: 17.81 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -33.97 -4.98 -38.95 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695886359.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.104 kcal (2) G-P(sol) polarization free energy of solvation -33.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds