Wall clock time and date at job start Mon Mar 30 2020 02:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46984 * 2 1 4 4 C 1.52994 * 109.46855 * 119.99863 * 2 1 3 5 5 C 1.50700 * 109.46972 * 185.07832 * 4 2 1 6 6 H 1.08007 * 120.00006 * 3.05105 * 5 4 2 7 7 C 1.37872 * 120.00195 * 183.33679 * 5 4 2 8 8 N 1.31513 * 120.00015 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00031 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47419 * 59.99821 * 9 7 5 11 11 H 1.48504 * 109.47145 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47081 * 299.99378 * 9 7 5 13 13 N 1.46895 * 109.46928 * 239.99857 * 2 1 3 14 14 C 1.48754 * 111.00519 * 300.13009 * 13 2 1 15 15 C 1.55125 * 101.66701 * 157.59336 * 14 13 2 16 16 H 1.09000 * 110.79960 * 82.92887 * 15 14 13 17 17 O 1.42900 * 110.96339 * 206.33503 * 15 14 13 18 18 C 1.54420 * 102.52744 * 324.66726 * 15 14 13 19 19 O 1.43490 * 106.59367 * 21.25885 * 18 15 14 20 20 H 1.09001 * 109.47474 * 186.84524 * 1 2 3 21 21 H 1.09001 * 109.47488 * 306.84422 * 1 2 3 22 22 H 1.09003 * 109.47137 * 66.84661 * 1 2 3 23 23 H 1.08994 * 109.47176 * 65.07804 * 4 2 1 24 24 H 1.08999 * 109.47416 * 305.07239 * 4 2 1 25 25 H 0.97005 * 120.00148 * 180.02562 * 8 7 5 26 26 H 1.08999 * 110.99111 * 275.69213 * 14 13 2 27 27 H 1.08999 * 110.98422 * 39.49541 * 14 13 2 28 28 H 0.96696 * 114.00222 * 174.65556 * 17 15 14 29 29 H 1.08999 * 110.03215 * 261.97720 * 18 15 14 30 30 H 1.09002 * 110.03567 * 140.54081 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 3.5417 -0.6132 1.3137 6 1 4.0745 -0.0417 0.5681 7 6 4.2359 -1.2489 2.3211 8 7 3.5876 -1.9491 3.2261 9 14 6.0975 -1.1156 2.4006 10 1 6.4861 0.3107 2.5419 11 1 6.5992 -1.8829 3.5689 12 1 6.6870 -1.6684 1.1548 13 7 2.0196 -0.6925 -1.1994 14 6 1.5401 -2.1002 -1.2354 15 6 1.6421 -2.4277 -2.7483 16 1 2.6581 -2.7199 -3.0134 17 8 0.7111 -3.4481 -3.1143 18 6 1.2686 -1.0825 -3.4081 19 8 1.4943 -0.0654 -2.4214 20 1 -0.3634 -1.0203 0.1225 21 1 -0.3634 0.6162 0.8224 22 1 -0.3633 0.4041 -0.9449 23 1 1.7528 -1.7717 1.2049 24 1 1.6043 -0.2625 2.1369 25 1 4.0760 -2.3961 3.9351 26 1 2.1915 -2.7496 -0.6506 27 1 0.5089 -2.1703 -0.8893 28 1 0.6796 -3.6298 -4.0635 29 1 0.2193 -1.0900 -3.7033 30 1 1.9005 -0.9052 -4.2784 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695886363.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:31 Heat of formation + Delta-G solvation = -46.944545 kcal Electronic energy + Delta-G solvation = -13579.830433 eV Core-core repulsion = 11184.156223 eV Total energy + Delta-G solvation = -2395.674210 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 201.115 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.00689 -36.32359 -34.68976 -32.35473 -30.36115 -28.38049 -27.35635 -24.15912 -22.84320 -21.58581 -19.16846 -17.35090 -16.27285 -16.14601 -15.59861 -14.83809 -14.44736 -13.83770 -13.33230 -13.04331 -12.68383 -12.35094 -12.06812 -11.72805 -11.34402 -11.28696 -11.02614 -10.70255 -10.53449 -10.18390 -9.98174 -9.89991 -9.29945 -9.13147 -8.34959 -7.96621 -5.97079 -3.97408 3.37719 3.41108 3.41842 3.45744 4.02938 4.50543 4.75568 4.88887 5.14861 5.39128 5.45862 5.64045 5.74842 5.76201 5.86050 5.99385 6.09356 6.31980 6.53445 6.59781 6.84275 7.10064 7.35175 7.57174 7.64547 7.70476 8.02076 8.42709 9.08628 9.65895 11.14281 Molecular weight = 201.12amu Principal moments of inertia in cm(-1) A = 0.039342 B = 0.009989 C = 0.009333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.533486 B = 2802.394041 C = 2999.375723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.057 3.943 3 H 0.086 0.914 4 C 0.030 3.970 5 C -0.506 4.506 6 H 0.063 0.937 7 C 0.054 3.946 8 N -0.900 5.900 9 Si 0.893 3.107 10 H -0.277 1.277 11 H -0.290 1.290 12 H -0.277 1.277 13 N -0.281 5.281 14 C 0.004 3.996 15 C 0.078 3.922 16 H 0.081 0.919 17 O -0.559 6.559 18 C 0.014 3.986 19 O -0.269 6.269 20 H 0.052 0.948 21 H 0.060 0.940 22 H 0.050 0.950 23 H 0.024 0.976 24 H 0.028 0.972 25 H 0.260 0.740 26 H 0.120 0.880 27 H 0.069 0.931 28 H 0.378 0.622 29 H 0.065 0.935 30 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.743 -0.840 -10.974 11.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.052 4.052 3 H 0.104 0.896 4 C -0.007 4.007 5 C -0.545 4.545 6 H 0.081 0.919 7 C -0.146 4.146 8 N -0.540 5.540 9 Si 0.721 3.279 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.202 1.202 13 N -0.051 5.051 14 C -0.124 4.124 15 C 0.018 3.982 16 H 0.099 0.901 17 O -0.363 6.363 18 C -0.065 4.065 19 O -0.270 6.270 20 H 0.071 0.929 21 H 0.079 0.921 22 H 0.070 0.930 23 H 0.042 0.958 24 H 0.047 0.953 25 H 0.070 0.930 26 H 0.138 0.862 27 H 0.087 0.913 28 H 0.225 0.775 29 H 0.083 0.917 30 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.298 -0.650 -10.219 11.105 hybrid contribution 0.204 -0.218 -0.447 0.538 sum -4.094 -0.868 -10.666 11.458 Atomic orbital electron populations 1.22385 0.98243 1.01558 1.01488 1.22573 0.91933 1.00260 0.90451 0.89609 1.19270 0.96748 0.95485 0.89209 1.21170 0.91502 1.31076 1.10733 0.91908 1.25008 0.98394 0.95433 0.95758 1.69950 1.35599 1.33399 1.15078 0.86634 0.85822 0.78102 0.77302 1.20295 1.21541 1.20218 1.71931 1.41575 0.98594 0.93044 1.23937 1.02261 0.92279 0.93947 1.23457 0.92801 0.86610 0.95341 0.90083 1.86531 1.63189 1.57505 1.29104 1.23834 1.00339 0.89502 0.92870 1.91412 1.88170 1.27159 1.20291 0.92919 0.92142 0.93043 0.95807 0.95339 0.93031 0.86165 0.91272 0.77526 0.91690 0.91163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.29 8.65 37.16 0.32 -2.97 16 2 C 0.06 1.22 2.71 -67.72 -0.18 1.04 16 3 H 0.09 1.91 8.14 -51.93 -0.42 1.48 16 4 C 0.03 0.77 4.32 -27.89 -0.12 0.65 16 5 C -0.51 -14.12 8.84 -34.44 -0.30 -14.42 16 6 H 0.06 1.76 7.74 -52.48 -0.41 1.35 16 7 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -26.69 13.29 55.43 0.74 -25.95 16 9 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 N -0.28 -5.86 5.65 -104.11 -0.59 -6.45 16 14 C 0.00 0.08 5.19 -1.67 -0.01 0.07 16 15 C 0.08 1.18 4.46 -24.86 -0.11 1.07 16 16 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 17 O -0.56 -7.42 13.41 -35.23 -0.47 -7.89 16 18 C 0.01 0.20 7.70 37.90 0.29 0.49 16 19 O -0.27 -5.17 10.88 -14.35 -0.16 -5.32 16 20 H 0.05 0.96 6.39 -51.93 -0.33 0.63 16 21 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 22 H 0.05 0.91 7.36 -51.93 -0.38 0.52 16 23 H 0.02 0.63 6.75 -51.93 -0.35 0.28 16 24 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 26 H 0.12 2.45 7.69 -51.93 -0.40 2.05 16 27 H 0.07 1.31 5.82 -51.93 -0.30 1.01 16 28 H 0.38 2.96 9.11 45.56 0.42 3.38 16 29 H 0.07 0.86 8.06 -51.93 -0.42 0.45 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 249.34 15.07 3.76 3.76 Total: -1.00 -31.19 249.34 -5.38 -36.57 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: -3.42 Total: 1.11 kcal Atomic # 6 Polarization: -12.41 SS G_CDS: -0.21 Total: -12.62 kcal Atomic # 7 Polarization: -32.55 SS G_CDS: 0.15 Total: -32.40 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: -0.63 Total: -13.21 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -31.19 -5.38 -36.57 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695886363.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.379 kcal (2) G-P(sol) polarization free energy of solvation -31.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds